[INFO] cloning repository https://github.com/Euphrasiologist/nu_plugin_bio
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Euphrasiologist/nu_plugin_bio" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEuphrasiologist%2Fnu_plugin_bio", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEuphrasiologist%2Fnu_plugin_bio'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 49ab34152f2a8e42eeae0fb9f762e2f695339f5c
[INFO] building Euphrasiologist/nu_plugin_bio against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FEuphrasiologist%2Fnu_plugin_bio" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/Euphrasiologist/nu_plugin_bio
[INFO] finished tweaking git repo https://github.com/Euphrasiologist/nu_plugin_bio
[INFO] tweaked toml for git repo https://github.com/Euphrasiologist/nu_plugin_bio written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/Euphrasiologist/nu_plugin_bio on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/Euphrasiologist/nu_plugin_bio already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded paste v1.0.9
[INFO] [stderr]   Downloaded ghost v0.1.6
[INFO] [stderr]   Downloaded typetag-impl v0.2.5
[INFO] [stderr]   Downloaded typetag v0.2.5
[INFO] [stderr]   Downloaded erased-serde v0.3.23
[INFO] [stderr]   Downloaded os_pipe v1.2.2
[INFO] [stderr]   Downloaded inventory v0.3.3
[INFO] [stderr]   Downloaded strip-ansi-escapes v0.2.0
[INFO] [stderr]   Downloaded doctest-file v1.0.0
[INFO] [stderr]   Downloaded noodles-core v0.17.0
[INFO] [stderr]   Downloaded cxxbridge-flags v1.0.82
[INFO] [stderr]   Downloaded pwd v1.4.0
[INFO] [stderr]   Downloaded supports-color v3.0.2
[INFO] [stderr]   Downloaded supports-hyperlinks v3.1.0
[INFO] [stderr]   Downloaded supports-unicode v3.0.0
[INFO] [stderr]   Downloaded thiserror-impl v1.0.49
[INFO] [stderr]   Downloaded vte_generate_state_changes v0.1.1
[INFO] [stderr]   Downloaded nu-glob v0.104.1
[INFO] [stderr]   Downloaded thiserror v1.0.49
[INFO] [stderr]   Downloaded miette-derive v7.6.0
[INFO] [stderr]   Downloaded nu-derive-value v0.104.1
[INFO] [stderr]   Downloaded num-format v0.4.3
[INFO] [stderr]   Downloaded iana-time-zone v0.1.53
[INFO] [stderr]   Downloaded omnipath v0.1.1
[INFO] [stderr]   Downloaded noodles-fastq v0.19.0
[INFO] [stderr]   Downloaded sys-locale v0.3.1
[INFO] [stderr]   Downloaded crossbeam-deque v0.8.2
[INFO] [stderr]   Downloaded lscolors v0.17.0
[INFO] [stderr]   Downloaded noodles-tabix v0.55.0
[INFO] [stderr]   Downloaded noodles v0.99.0
[INFO] [stderr]   Downloaded noodles-bed v0.26.0
[INFO] [stderr]   Downloaded digest v0.10.6
[INFO] [stderr]   Downloaded nu-plugin v0.104.1
[INFO] [stderr]   Downloaded nu-path v0.104.1
[INFO] [stderr]   Downloaded nu-utils v0.104.1
[INFO] [stderr]   Downloaded recvmsg v1.0.0
[INFO] [stderr]   Downloaded lexical-core v1.0.5
[INFO] [stderr]   Downloaded nu-plugin-core v0.104.1
[INFO] [stderr]   Downloaded nu-plugin-protocol v0.104.1
[INFO] [stderr]   Downloaded noodles-gff v0.50.0
[INFO] [stderr]   Downloaded nu-system v0.104.1
[INFO] [stderr]   Downloaded bytemuck_derive v1.3.0
[INFO] [stderr]   Downloaded vte v0.11.1
[INFO] [stderr]   Downloaded noodles-fasta v0.54.0
[INFO] [stderr]   Downloaded crossbeam-utils v0.8.14
[INFO] [stderr]   Downloaded noodles-csi v0.49.0
[INFO] [stderr]   Downloaded lexical-parse-integer v1.0.5
[INFO] [stderr]   Downloaded crossbeam-epoch v0.9.13
[INFO] [stderr]   Downloaded bytemuck v1.12.3
[INFO] [stderr]   Downloaded noodles-bgzf v0.41.0
[INFO] [stderr]   Downloaded syn v1.0.104
[INFO] [stderr]   Downloaded cc v1.0.77
[INFO] [stderr]   Downloaded cxxbridge-macro v1.0.82
[INFO] [stderr]   Downloaded noodles-bcf v0.76.0
[INFO] [stderr]   Downloaded lexical-write-integer v1.0.5
[INFO] [stderr]   Downloaded nu-engine v0.104.1
[INFO] [stderr]   Downloaded noodles-bam v0.81.0
[INFO] [stderr]   Downloaded cxx-build v1.0.82
[INFO] [stderr]   Downloaded fancy-regex v0.14.0
[INFO] [stderr]   Downloaded libproc v0.14.10
[INFO] [stderr]   Downloaded crossbeam-channel v0.5.6
[INFO] [stderr]   Downloaded noodles-sam v0.77.0
[INFO] [stderr]   Downloaded nom v7.1.1
[INFO] [stderr]   Downloaded lexical-write-float v1.0.5
[INFO] [stderr]   Downloaded lexical-util v1.0.6
[INFO] [stderr]   Downloaded interprocess v2.2.3
[INFO] [stderr]   Downloaded miette v7.6.0
[INFO] [stderr]   Downloaded aho-corasick v0.7.20
[INFO] [stderr]   Downloaded noodles-vcf v0.79.0
[INFO] [stderr]   Downloaded ntapi v0.4.0
[INFO] [stderr]   Downloaded noodles-cram v0.84.0
[INFO] [stderr]   Downloaded pure-rust-locales v0.8.1
[INFO] [stderr]   Downloaded nu-protocol v0.104.1
[INFO] [stderr]   Downloaded lexical-parse-float v1.0.5
[INFO] [stderr]   Downloaded cxx v1.0.82
[INFO] [stderr]   Downloaded brotli-decompressor v4.0.3
[INFO] [stderr]   Downloaded regex v1.7.0
[INFO] [stderr]   Downloaded regex-syntax v0.6.28
[INFO] [stderr]   Downloaded gfa v0.10.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9c97c856c643623c1cb6e1b896a8cb7cbc6ce21504ae2dc8f7b2832a4e4c5860
[INFO] running `Command { std: "docker" "start" "-a" "9c97c856c643623c1cb6e1b896a8cb7cbc6ce21504ae2dc8f7b2832a4e4c5860", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9c97c856c643623c1cb6e1b896a8cb7cbc6ce21504ae2dc8f7b2832a4e4c5860", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9c97c856c643623c1cb6e1b896a8cb7cbc6ce21504ae2dc8f7b2832a4e4c5860", kill_on_drop: false }`
[INFO] [stdout] 9c97c856c643623c1cb6e1b896a8cb7cbc6ce21504ae2dc8f7b2832a4e4c5860
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0bea7652528dbefc2b5688a92e45463d0fc5108afd03b73ebe6d3849227348e3
[INFO] running `Command { std: "docker" "start" "-a" "0bea7652528dbefc2b5688a92e45463d0fc5108afd03b73ebe6d3849227348e3", kill_on_drop: false }`
[INFO] [stderr]    Compiling unicode-ident v1.0.5
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.14
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling zlib-rs v0.5.1
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling bitflags v2.4.0
[INFO] [stderr]    Compiling allocator-api2 v0.2.16
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling syn v1.0.104
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling lexical-util v1.0.6
[INFO] [stderr]    Compiling rustix v0.38.44
[INFO] [stderr]    Compiling linux-raw-sys v0.4.15
[INFO] [stderr]    Compiling iana-time-zone v0.1.53
[INFO] [stderr]    Compiling proc-macro2 v1.0.95
[INFO] [stderr]    Compiling pkg-config v0.3.26
[INFO] [stderr]    Compiling signal-hook v0.3.18
[INFO] [stderr]    Compiling ryu v1.0.11
[INFO] [stderr]    Compiling pure-rust-locales v0.8.1
[INFO] [stderr]    Compiling cc v1.0.77
[INFO] [stderr]    Compiling nix v0.29.0
[INFO] [stderr]    Compiling typenum v1.15.0
[INFO] [stderr]    Compiling rustix v1.0.7
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling memoffset v0.7.1
[INFO] [stderr]    Compiling hashbrown v0.15.4
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.13
[INFO] [stderr]    Compiling crossbeam-channel v0.5.6
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling lock_api v0.4.13
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling thiserror v1.0.49
[INFO] [stderr]    Compiling either v1.8.0
[INFO] [stderr]    Compiling vte_generate_state_changes v0.1.1
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.5
[INFO] [stderr]    Compiling lexical-write-integer v1.0.5
[INFO] [stderr]    Compiling parking_lot_core v0.9.11
[INFO] [stderr]    Compiling crossbeam-deque v0.8.2
[INFO] [stderr]    Compiling mio v1.0.4
[INFO] [stderr]    Compiling generic-array v0.14.6
[INFO] [stderr]    Compiling itoa v1.0.4
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling utf8parse v0.2.0
[INFO] [stderr]    Compiling ref-cast v1.0.24
[INFO] [stderr]    Compiling erased-serde v0.3.23
[INFO] [stderr]    Compiling indexmap v2.10.0
[INFO] [stderr]    Compiling option-ext v0.2.0
[INFO] [stderr]    Compiling procfs v0.17.0
[INFO] [stderr]    Compiling dirs-sys v0.4.1
[INFO] [stderr]    Compiling vte v0.11.1
[INFO] [stderr]    Compiling lexical-write-float v1.0.5
[INFO] [stderr]    Compiling signal-hook-mio v0.2.4
[INFO] [stderr]    Compiling parking_lot v0.12.4
[INFO] [stderr]    Compiling lexical-parse-float v1.0.5
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling arrayvec v0.7.2
[INFO] [stderr]    Compiling nu-ansi-term v0.50.1
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling paste v1.0.9
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling supports-color v3.0.2
[INFO] [stderr]    Compiling num-format v0.4.3
[INFO] [stderr]    Compiling lscolors v0.17.0
[INFO] [stderr]    Compiling textwrap v0.16.2
[INFO] [stderr]    Compiling terminal_size v0.4.2
[INFO] [stderr]    Compiling rmp v0.8.14
[INFO] [stderr]    Compiling strip-ansi-escapes v0.2.0
[INFO] [stderr]    Compiling lexical-core v1.0.5
[INFO] [stderr]    Compiling brotli-decompressor v4.0.3
[INFO] [stderr]    Compiling dirs v5.0.1
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling supports-hyperlinks v3.1.0
[INFO] [stderr]    Compiling web-time v1.1.0
[INFO] [stderr]    Compiling sys-locale v0.3.1
[INFO] [stderr]    Compiling supports-unicode v3.0.0
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling unicase v2.8.1
[INFO] [stderr]    Compiling lru v0.12.5
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling os_pipe v1.2.2
[INFO] [stderr]    Compiling nu-glob v0.104.1
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling block-buffer v0.10.3
[INFO] [stderr]    Compiling crypto-common v0.1.6
[INFO] [stderr]    Compiling percent-encoding v2.2.0
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling digest v0.10.6
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling arrayvec v0.5.2
[INFO] [stderr]    Compiling anyhow v1.0.66
[INFO] [stderr]    Compiling doctest-file v1.0.0
[INFO] [stderr]    Compiling md-5 v0.10.5
[INFO] [stderr]    Compiling brotli v7.0.0
[INFO] [stderr]    Compiling libz-rs-sys v0.5.1
[INFO] [stderr]    Compiling bzip2 v0.5.2
[INFO] [stderr]    Compiling flate2 v1.1.2
[INFO] [stderr]    Compiling xz2 v0.1.7
[INFO] [stderr]    Compiling interprocess v2.2.3
[INFO] [stderr] error: could not compile `rustix` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/c7f6aa2869acdbf014d094c6e427e554e160b6db/bin/rustc --crate-name rustix --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rustix-0.38.44/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 --warn=unexpected_cfgs --check-cfg 'cfg(alloc_c_string)' --check-cfg 'cfg(alloc_ffi)' --check-cfg 'cfg(apple)' --check-cfg 'cfg(asm_experimental_arch)' --check-cfg 'cfg(bsd)' --check-cfg 'cfg(core_c_str)' --check-cfg 'cfg(core_ffi_c)' --check-cfg 'cfg(core_intrinsics)' --check-cfg 'cfg(criterion)' --check-cfg 'cfg(document_experimental_runtime_api)' --check-cfg 'cfg(fix_y2038)' --check-cfg 'cfg(freebsdlike)' --check-cfg 'cfg(libc)' --check-cfg 'cfg(linux_kernel)' --check-cfg 'cfg(linux_like)' --check-cfg 'cfg(linux_raw)' --check-cfg 'cfg(netbsdlike)' --check-cfg 'cfg(rustc_attrs)' --check-cfg 'cfg(solarish)' --check-cfg 'cfg(staged_api)' --check-cfg 'cfg(static_assertions)' --check-cfg 'cfg(thumb_mode)' --check-cfg 'cfg(wasi)' --check-cfg 'cfg(wasi_ext)' --check-cfg 'cfg(target_arch, values("xtensa"))' --cfg 'feature="alloc"' --cfg 'feature="default"' --cfg 'feature="fs"' --cfg 'feature="libc-extra-traits"' --cfg 'feature="param"' --cfg 'feature="process"' --cfg 'feature="std"' --cfg 'feature="stdio"' --cfg 'feature="system"' --cfg 'feature="termios"' --cfg 'feature="thread"' --cfg 'feature="use-libc-auxv"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("all-apis", "alloc", "cc", "compiler_builtins", "core", "default", "event", "fs", "io_uring", "itoa", "libc", "libc-extra-traits", "libc_errno", "linux_4_11", "linux_latest", "mm", "mount", "net", "once_cell", "param", "pipe", "process", "procfs", "pty", "rand", "runtime", "rustc-dep-of-std", "rustc-std-workspace-alloc", "shm", "std", "stdio", "system", "termios", "thread", "time", "try_close", "use-explicitly-provided-auxv", "use-libc", "use-libc-auxv"))' -C metadata=59a67cd3bfe1338d -C extra-filename=-b3f4f451c74e8c9b --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern bitflags=/opt/rustwide/target/debug/deps/libbitflags-06ef7fc2bda8fd57.rmeta --extern linux_raw_sys=/opt/rustwide/target/debug/deps/liblinux_raw_sys-bd5a7f223afa9757.rmeta --cap-lints allow --cap-lints=forbid --cfg linux_raw --cfg linux_like --cfg linux_kernel` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "0bea7652528dbefc2b5688a92e45463d0fc5108afd03b73ebe6d3849227348e3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0bea7652528dbefc2b5688a92e45463d0fc5108afd03b73ebe6d3849227348e3", kill_on_drop: false }`
[INFO] [stdout] 0bea7652528dbefc2b5688a92e45463d0fc5108afd03b73ebe6d3849227348e3