[INFO] cloning repository https://github.com/10XGenomics/rust-pseudoaligner [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/rust-pseudoaligner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9d9cab8a1475bc7cd34169822620c77bce0d5930 [INFO] building 10XGenomics/rust-pseudoaligner against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner [INFO] finished tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner [INFO] tweaked toml for git repo https://github.com/10XGenomics/rust-pseudoaligner written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/10XGenomics/rust-pseudoaligner on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/10XGenomics/rust-pseudoaligner already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/10XGenomics/rust-debruijn` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded proc-macro2 v1.0.39 [INFO] [stderr] Downloaded serde_derive v1.0.147 [INFO] [stderr] Downloaded enum-map-derive v0.6.0 [INFO] [stderr] Downloaded unarray v0.1.4 [INFO] [stderr] Downloaded quote v1.0.18 [INFO] [stderr] Downloaded rusty-fork v0.3.0 [INFO] [stderr] Downloaded docopt v1.1.1 [INFO] [stderr] Downloaded strum v0.23.0 [INFO] [stderr] Downloaded serde v1.0.147 [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded bytecount v0.6.3 [INFO] [stderr] Downloaded derive-new v0.5.9 [INFO] [stderr] Downloaded wyhash v0.5.0 [INFO] [stderr] Downloaded indexmap v2.2.2 [INFO] [stderr] Downloaded num-complex v0.4.1 [INFO] [stderr] Downloaded itertools v0.11.0 [INFO] [stderr] Downloaded statrs v0.16.0 [INFO] [stderr] Downloaded unicode-segmentation v1.9.0 [INFO] [stderr] Downloaded libm v0.2.2 [INFO] [stderr] Downloaded petgraph v0.6.4 [INFO] [stderr] Downloaded bio v1.5.0 [INFO] [stderr] Downloaded serde_json v1.0.99 [INFO] [stderr] Downloaded ryu v1.0.10 [INFO] [stderr] Downloaded ndarray v0.15.4 [INFO] [stderr] Downloaded syn v1.0.96 [INFO] [stderr] Downloaded csv-core v0.1.11 [INFO] [stderr] Downloaded enum-map v1.1.1 [INFO] [stderr] Downloaded paste v1.0.7 [INFO] [stderr] Downloaded strum_macros v0.23.1 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded wait-timeout v0.2.0 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded multimap v0.8.3 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded ordered-float v3.7.0 [INFO] [stderr] Downloaded thiserror v1.0.31 [INFO] [stderr] Downloaded windows-targets v0.48.0 [INFO] [stderr] Downloaded boomphf v0.6.0 [INFO] [stderr] Downloaded hermit-abi v0.3.1 [INFO] [stderr] Downloaded proptest v1.4.0 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded getset v0.0.9 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded rustversion v1.0.6 [INFO] [stderr] Downloaded getrandom v0.2.6 [INFO] [stderr] Downloaded thiserror-impl v1.0.31 [INFO] [stderr] Downloaded crossbeam-epoch v0.9.8 [INFO] [stderr] Downloaded unicode-ident v1.0.0 [INFO] [stderr] Downloaded csv v1.3.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 51fb6ff2952bf2cc3597797f27d58070da798fbfa7f88df6eb6a0e94a001dca6 [INFO] running `Command { std: "docker" "start" "-a" "51fb6ff2952bf2cc3597797f27d58070da798fbfa7f88df6eb6a0e94a001dca6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "51fb6ff2952bf2cc3597797f27d58070da798fbfa7f88df6eb6a0e94a001dca6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "51fb6ff2952bf2cc3597797f27d58070da798fbfa7f88df6eb6a0e94a001dca6", kill_on_drop: false }` [INFO] [stdout] 51fb6ff2952bf2cc3597797f27d58070da798fbfa7f88df6eb6a0e94a001dca6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c16474a850360de3f884dcc5794baf685923635b2c836311aae71162d7943420 [INFO] running `Command { std: "docker" "start" "-a" "c16474a850360de3f884dcc5794baf685923635b2c836311aae71162d7943420", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling proc-macro2 v1.0.39 [INFO] [stderr] Compiling unicode-ident v1.0.0 [INFO] [stderr] Compiling syn v1.0.96 [INFO] [stderr] Compiling libm v0.2.2 [INFO] [stderr] Compiling libc v0.2.152 [INFO] [stderr] Compiling serde_derive v1.0.147 [INFO] [stderr] Compiling serde v1.0.147 [INFO] [stderr] Compiling memchr v2.7.1 [INFO] [stderr] Compiling crossbeam-utils v0.8.19 [INFO] [stderr] Compiling regex-syntax v0.8.2 [INFO] [stderr] Compiling bytemuck v1.14.0 [INFO] [stderr] Compiling rustversion v1.0.6 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rustix v0.38.31 [INFO] [stderr] Compiling matrixmultiply v0.3.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling ryu v1.0.10 [INFO] [stderr] Compiling itoa v1.0.10 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bitflags v2.4.2 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling memoffset v0.6.5 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling crossbeam-epoch v0.9.8 [INFO] [stderr] Compiling safe_arch v0.7.1 [INFO] [stderr] Compiling num-rational v0.4.0 [INFO] [stderr] Compiling aho-corasick v1.1.2 [INFO] [stderr] Compiling paste v1.0.7 [INFO] [stderr] Compiling linux-raw-sys v0.4.13 [INFO] [stderr] Compiling unicode-segmentation v1.9.0 [INFO] [stderr] Compiling log v0.4.20 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling lock_api v0.4.11 [INFO] [stderr] Compiling quote v1.0.18 [INFO] [stderr] Compiling wide v0.7.13 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling anyhow v1.0.79 [INFO] [stderr] Compiling serde_json v1.0.99 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling smallvec v1.10.0 [INFO] [stderr] Compiling getrandom v0.2.6 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling indexmap v2.2.2 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling wyhash v0.5.0 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling regex-automata v0.4.5 [INFO] [stderr] Compiling termcolor v1.1.3 [INFO] [stderr] Compiling num-complex v0.4.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling ndarray v0.15.4 [INFO] [stderr] Compiling ordered-float v3.7.0 [INFO] [stderr] Compiling is-terminal v0.4.10 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling rayon v1.8.1 [INFO] [stderr] Compiling miniz_oxide v0.7.1 [INFO] [stderr] Compiling parking_lot_core v0.9.9 [INFO] [stderr] Compiling strum v0.23.0 [INFO] [stderr] Compiling bytecount v0.6.3 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling petgraph v0.6.4 [INFO] [stderr] Compiling flate2 v1.0.28 [INFO] [stderr] Compiling dashmap v5.5.3 [INFO] [stderr] Compiling regex v1.10.3 [INFO] [stderr] Compiling env_logger v0.10.2 [INFO] [stderr] Compiling pretty_env_logger v0.5.0 [INFO] [stderr] Compiling thiserror-impl v1.0.31 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling enum-map v1.1.1 [INFO] [stderr] Compiling thiserror v1.0.31 [INFO] [stderr] Compiling bio-types v1.0.1 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling csv v1.3.0 [INFO] [stderr] Compiling boomphf v0.6.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Compiling docopt v1.1.1 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling debruijn v0.3.4 (https://github.com/10XGenomics/rust-debruijn#8d9a5c52) [INFO] [stderr] Compiling statrs v0.16.0 [INFO] [stderr] Compiling bio v1.5.0 [INFO] [stderr] Compiling debruijn_mapping v0.6.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 56.64s [INFO] running `Command { std: "docker" "inspect" "c16474a850360de3f884dcc5794baf685923635b2c836311aae71162d7943420", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c16474a850360de3f884dcc5794baf685923635b2c836311aae71162d7943420", kill_on_drop: false }` [INFO] [stdout] c16474a850360de3f884dcc5794baf685923635b2c836311aae71162d7943420 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d484118731ab74756934d047718d01f13ba3a20e267acd38bf3930ae566b1fd6 [INFO] running `Command { std: "docker" "start" "-a" "d484118731ab74756934d047718d01f13ba3a20e267acd38bf3930ae566b1fd6", kill_on_drop: false }` [INFO] [stderr] Compiling rustix v0.38.31 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling fastrand v2.0.1 [INFO] [stderr] Compiling wait-timeout v0.2.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling rand_xorshift v0.3.0 [INFO] [stderr] Compiling unarray v0.1.4 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling bio v1.5.0 [INFO] [stderr] Compiling debruijn v0.3.4 (https://github.com/10XGenomics/rust-debruijn#8d9a5c52) [INFO] [stderr] Compiling is-terminal v0.4.10 [INFO] [stderr] Compiling tempfile v3.10.0 [INFO] [stderr] Compiling env_logger v0.10.2 [INFO] [stderr] Compiling rusty-fork v0.3.0 [INFO] [stderr] Compiling proptest v1.4.0 [INFO] [stderr] Compiling pretty_env_logger v0.5.0 [INFO] [stderr] Compiling debruijn_mapping v0.6.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 16.42s [INFO] running `Command { std: "docker" "inspect" "d484118731ab74756934d047718d01f13ba3a20e267acd38bf3930ae566b1fd6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d484118731ab74756934d047718d01f13ba3a20e267acd38bf3930ae566b1fd6", kill_on_drop: false }` [INFO] [stdout] d484118731ab74756934d047718d01f13ba3a20e267acd38bf3930ae566b1fd6