[INFO] fetching crate cytos 1.2.1...
[INFO] building cytos-1.2.1 against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2
[INFO] extracting crate cytos 1.2.1 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate cytos 1.2.1
[INFO] finished tweaking crates.io crate cytos 1.2.1
[INFO] tweaked toml for crates.io crate cytos 1.2.1 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate cytos 1.2.1 on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate cytos 1.2.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded getrandom v0.2.11
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9ae56b1df393d121fe0859faa039b18cbd6a790a64f5aed394d7efa9f9176b32
[INFO] running `Command { std: "docker" "start" "-a" "9ae56b1df393d121fe0859faa039b18cbd6a790a64f5aed394d7efa9f9176b32", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9ae56b1df393d121fe0859faa039b18cbd6a790a64f5aed394d7efa9f9176b32", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9ae56b1df393d121fe0859faa039b18cbd6a790a64f5aed394d7efa9f9176b32", kill_on_drop: false }`
[INFO] [stdout] 9ae56b1df393d121fe0859faa039b18cbd6a790a64f5aed394d7efa9f9176b32
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3ca532743760ab06e890779ee5cc7d9324c3c1bb1673d55ad5bde8e880e36825
[INFO] running `Command { std: "docker" "start" "-a" "3ca532743760ab06e890779ee5cc7d9324c3c1bb1673d55ad5bde8e880e36825", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.69
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[INFO] [stderr]    Compiling num-integer v0.1.45
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[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling thiserror v1.0.50
[INFO] [stderr]    Compiling aho-corasick v1.1.2
[INFO] [stderr]    Compiling rustix v0.38.24
[INFO] [stderr]    Compiling feature-probe v0.1.1
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[INFO] [stderr]    Compiling regex-automata v0.4.3
[INFO] [stderr]    Compiling ndarray v0.15.6
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling simba v0.6.0
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]    Compiling serde_derive v1.0.192
[INFO] [stderr]    Compiling thiserror-impl v1.0.50
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling clap_derive v4.4.7
[INFO] [stderr]    Compiling enum-map v1.1.1
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[INFO] [stderr]    Compiling env_logger v0.10.1
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling clap v4.4.8
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.4.0
[INFO] [stderr]    Compiling cytos v1.2.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/cli/msa/concat.rs:25:28
[INFO] [stdout]    |
[INFO] [stdout] 25 | fn read_fasta_files(input: &Vec<PathBuf>) -> CytosResult<HashMap<&PathBuf, FastaFile>> {
[INFO] [stdout]    |                            ^^^^^^^^^^^^^                         ^^^^^^^^  ^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                            |                                     |
[INFO] [stdout]    |                            |                                     the same lifetime is elided here
[INFO] [stdout]    |                            the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 25 | fn read_fasta_files(input: &Vec<PathBuf>) -> CytosResult<HashMap<&PathBuf, FastaFile<'_>>> {
[INFO] [stdout]    |                                                                                     ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's named elsewhere is confusing
[INFO] [stdout]   --> src/model/fasta/fasta_file.rs:17:57
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub fn load(path: &'a path::PathBuf) -> CytosResult<FastaFile> {
[INFO] [stdout]    |                        -- the lifetime is named here    ^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout] help: consistently use `'a`
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub fn load(path: &'a path::PathBuf) -> CytosResult<FastaFile<'a>> {
[INFO] [stdout]    |                                                                  ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 59.45s
[INFO] running `Command { std: "docker" "inspect" "3ca532743760ab06e890779ee5cc7d9324c3c1bb1673d55ad5bde8e880e36825", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3ca532743760ab06e890779ee5cc7d9324c3c1bb1673d55ad5bde8e880e36825", kill_on_drop: false }`
[INFO] [stdout] 3ca532743760ab06e890779ee5cc7d9324c3c1bb1673d55ad5bde8e880e36825
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3e4140a6e9051ceb1a0f479e6c83d9290ac215e0a34824123dbda2d4e64c8c33
[INFO] running `Command { std: "docker" "start" "-a" "3e4140a6e9051ceb1a0f479e6c83d9290ac215e0a34824123dbda2d4e64c8c33", kill_on_drop: false }`
[INFO] [stderr]    Compiling cytos v1.2.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/cli/msa/concat.rs:25:28
[INFO] [stdout]    |
[INFO] [stdout] 25 | fn read_fasta_files(input: &Vec<PathBuf>) -> CytosResult<HashMap<&PathBuf, FastaFile>> {
[INFO] [stdout]    |                            ^^^^^^^^^^^^^                         ^^^^^^^^  ^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                            |                                     |
[INFO] [stdout]    |                            |                                     the same lifetime is elided here
[INFO] [stdout]    |                            the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 25 | fn read_fasta_files(input: &Vec<PathBuf>) -> CytosResult<HashMap<&PathBuf, FastaFile<'_>>> {
[INFO] [stdout]    |                                                                                     ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's named elsewhere is confusing
[INFO] [stdout]   --> src/model/fasta/fasta_file.rs:17:57
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub fn load(path: &'a path::PathBuf) -> CytosResult<FastaFile> {
[INFO] [stdout]    |                        -- the lifetime is named here    ^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout] help: consistently use `'a`
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub fn load(path: &'a path::PathBuf) -> CytosResult<FastaFile<'a>> {
[INFO] [stdout]    |                                                                  ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.93s
[INFO] running `Command { std: "docker" "inspect" "3e4140a6e9051ceb1a0f479e6c83d9290ac215e0a34824123dbda2d4e64c8c33", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3e4140a6e9051ceb1a0f479e6c83d9290ac215e0a34824123dbda2d4e64c8c33", kill_on_drop: false }`
[INFO] [stdout] 3e4140a6e9051ceb1a0f479e6c83d9290ac215e0a34824123dbda2d4e64c8c33
