[INFO] cloning repository https://github.com/arudhir/transdecoder-rust
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/arudhir/transdecoder-rust" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Farudhir%2Ftransdecoder-rust", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Farudhir%2Ftransdecoder-rust'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b28e658d5c04de63c753d7d8b2a94f413557ecd7
[INFO] building arudhir/transdecoder-rust against try#d79d87d4c0f7f0d0785ad6e493cf8cf718ed89a6 for pr-146237-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Farudhir%2Ftransdecoder-rust" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/arudhir/transdecoder-rust
[INFO] finished tweaking git repo https://github.com/arudhir/transdecoder-rust
[INFO] tweaked toml for git repo https://github.com/arudhir/transdecoder-rust written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/arudhir/transdecoder-rust on toolchain d79d87d4c0f7f0d0785ad6e493cf8cf718ed89a6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d79d87d4c0f7f0d0785ad6e493cf8cf718ed89a6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/arudhir/transdecoder-rust already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d79d87d4c0f7f0d0785ad6e493cf8cf718ed89a6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stdout] 287a94cd18f53653b281d041ec5334499336f1b39c8c2e3f43178ef4fdd6fa61
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[INFO] running `Command { std: "docker" "inspect" "287a94cd18f53653b281d041ec5334499336f1b39c8c2e3f43178ef4fdd6fa61", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "287a94cd18f53653b281d041ec5334499336f1b39c8c2e3f43178ef4fdd6fa61", kill_on_drop: false }`
[INFO] [stdout] 287a94cd18f53653b281d041ec5334499336f1b39c8c2e3f43178ef4fdd6fa61
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d79d87d4c0f7f0d0785ad6e493cf8cf718ed89a6" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b073c121203c06b8b6cba3cefe3af6a7dad6d578821f5c90ccfaffcb8726a2b3
[INFO] running `Command { std: "docker" "start" "-a" "b073c121203c06b8b6cba3cefe3af6a7dad6d578821f5c90ccfaffcb8726a2b3", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v2.0.100
[INFO] [stderr]    Compiling libm v0.2.11
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling libc v0.2.171
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling wide v0.7.32
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling fixedbitset v0.4.2
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling petgraph v0.6.5
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling rand_chacha v0.3.1
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[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling bit-set v0.5.3
[INFO] [stderr]    Compiling ordered-float v3.9.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling strum v0.25.0
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling multimap v0.9.1
[INFO] [stderr]    Compiling statrs v0.16.1
[INFO] [stderr]    Compiling bio v1.6.0
[INFO] [stderr]    Compiling transdecoder-rust v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `orf`
[INFO] [stdout]   --> src/orf.rs:92:17
[INFO] [stdout]    |
[INFO] [stdout] 92 | fn classify_orf(orf: &str) -> ORFType {
[INFO] [stdout]    |                 ^^^ help: if this is intentional, prefix it with an underscore: `_orf`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seq`
[INFO] [stdout]   --> src/orf.rs:44:18
[INFO] [stdout]    |
[INFO] [stdout] 44 | pub fn find_orfs(seq: &str, strand: Strand) -> Vec<ORF> {
[INFO] [stdout]    |                  ^^^ help: if this is intentional, prefix it with an underscore: `_seq`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `strand`
[INFO] [stdout]   --> src/orf.rs:44:29
[INFO] [stdout]    |
[INFO] [stdout] 44 | pub fn find_orfs(seq: &str, strand: Strand) -> Vec<ORF> {
[INFO] [stdout]    |                             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_strand`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/orf.rs:45:9
[INFO] [stdout]    |
[INFO] [stdout] 45 |     let mut orfs = Vec::new();  // A dynamic vector of ORFs as an accumulator, like orfs = [] in
[INFO] [stdout]    |         ----^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `Strand` is never used
[INFO] [stdout]  --> src/types.rs:2:10
[INFO] [stdout]   |
[INFO] [stdout] 2 | pub enum Strand {
[INFO] [stdout]   |          ^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `make_codon_table` is never used
[INFO] [stdout]  --> src/orf.rs:4:8
[INFO] [stdout]   |
[INFO] [stdout] 4 | pub fn make_codon_table() -> HashMap<&'static str, char> {
[INFO] [stdout]   |        ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `find_orfs` is never used
[INFO] [stdout]   --> src/orf.rs:44:8
[INFO] [stdout]    |
[INFO] [stdout] 44 | pub fn find_orfs(seq: &str, strand: Strand) -> Vec<ORF> {
[INFO] [stdout]    |        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `is_start` is never used
[INFO] [stdout]   --> src/orf.rs:65:4
[INFO] [stdout]    |
[INFO] [stdout] 65 | fn is_start(seq: &str) -> bool {
[INFO] [stdout]    |    ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `is_stop` is never used
[INFO] [stdout]   --> src/orf.rs:70:4
[INFO] [stdout]    |
[INFO] [stdout] 70 | fn is_stop(seq: &str) -> bool {
[INFO] [stdout]    |    ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `translate` is never used
[INFO] [stdout]   --> src/orf.rs:75:4
[INFO] [stdout]    |
[INFO] [stdout] 75 | fn translate(seq: &str) -> String {
[INFO] [stdout]    |    ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `classify_orf` is never used
[INFO] [stdout]   --> src/orf.rs:92:4
[INFO] [stdout]    |
[INFO] [stdout] 92 | fn classify_orf(orf: &str) -> ORFType {
[INFO] [stdout]    |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `reverse_complement` is never used
[INFO] [stdout]   --> src/orf.rs:97:4
[INFO] [stdout]    |
[INFO] [stdout] 97 | fn reverse_complement(seq: &str) -> String {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `ORFType` is never used
[INFO] [stdout]  --> src/types.rs:9:10
[INFO] [stdout]   |
[INFO] [stdout] 9 | pub enum ORFType {
[INFO] [stdout]   |          ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `ORF` is never constructed
[INFO] [stdout]   --> src/types.rs:17:12
[INFO] [stdout]    |
[INFO] [stdout] 17 | pub struct ORF {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 12s
[INFO] running `Command { std: "docker" "inspect" "b073c121203c06b8b6cba3cefe3af6a7dad6d578821f5c90ccfaffcb8726a2b3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b073c121203c06b8b6cba3cefe3af6a7dad6d578821f5c90ccfaffcb8726a2b3", kill_on_drop: false }`
[INFO] [stdout] b073c121203c06b8b6cba3cefe3af6a7dad6d578821f5c90ccfaffcb8726a2b3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d79d87d4c0f7f0d0785ad6e493cf8cf718ed89a6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e956c578dce595fe3b061f200c2738801c11f52c51b3318a5107efadad4324fb
[INFO] running `Command { std: "docker" "start" "-a" "e956c578dce595fe3b061f200c2738801c11f52c51b3318a5107efadad4324fb", kill_on_drop: false }`
[INFO] [stderr]    Compiling transdecoder-rust v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `seq`
[INFO] [stdout]   --> src/orf.rs:44:18
[INFO] [stdout]    |
[INFO] [stdout] 44 | pub fn find_orfs(seq: &str, strand: Strand) -> Vec<ORF> {
[INFO] [stdout]    |                  ^^^ help: if this is intentional, prefix it with an underscore: `_seq`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `strand`
[INFO] [stdout]   --> src/orf.rs:44:29
[INFO] [stdout]    |
[INFO] [stdout] 44 | pub fn find_orfs(seq: &str, strand: Strand) -> Vec<ORF> {
[INFO] [stdout]    |                             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_strand`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/orf.rs:45:9
[INFO] [stdout]    |
[INFO] [stdout] 45 |     let mut orfs = Vec::new();  // A dynamic vector of ORFs as an accumulator, like orfs = [] in
[INFO] [stdout]    |         ----^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `orf`
[INFO] [stdout]   --> src/orf.rs:92:17
[INFO] [stdout]    |
[INFO] [stdout] 92 | fn classify_orf(orf: &str) -> ORFType {
[INFO] [stdout]    |                 ^^^ help: if this is intentional, prefix it with an underscore: `_orf`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `find_orfs` is never used
[INFO] [stdout]   --> src/orf.rs:44:8
[INFO] [stdout]    |
[INFO] [stdout] 44 | pub fn find_orfs(seq: &str, strand: Strand) -> Vec<ORF> {
[INFO] [stdout]    |        ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `classify_orf` is never used
[INFO] [stdout]   --> src/orf.rs:92:4
[INFO] [stdout]    |
[INFO] [stdout] 92 | fn classify_orf(orf: &str) -> ORFType {
[INFO] [stdout]    |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.76s
[INFO] running `Command { std: "docker" "inspect" "e956c578dce595fe3b061f200c2738801c11f52c51b3318a5107efadad4324fb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e956c578dce595fe3b061f200c2738801c11f52c51b3318a5107efadad4324fb", kill_on_drop: false }`
[INFO] [stdout] e956c578dce595fe3b061f200c2738801c11f52c51b3318a5107efadad4324fb