[INFO] cloning repository https://github.com/Dfam-consortium/DisCoord [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Dfam-consortium/DisCoord" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDfam-consortium%2FDisCoord", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDfam-consortium%2FDisCoord'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 698dd685de98f7d2e0f406416ae05f60c86447d3 [INFO] building Dfam-consortium/DisCoord against try#d79d87d4c0f7f0d0785ad6e493cf8cf718ed89a6 for pr-146237-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDfam-consortium%2FDisCoord" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/Dfam-consortium/DisCoord [INFO] finished tweaking git repo https://github.com/Dfam-consortium/DisCoord [INFO] tweaked toml for git repo https://github.com/Dfam-consortium/DisCoord written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/Dfam-consortium/DisCoord on toolchain d79d87d4c0f7f0d0785ad6e493cf8cf718ed89a6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d79d87d4c0f7f0d0785ad6e493cf8cf718ed89a6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/Dfam-consortium/DisCoord already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d79d87d4c0f7f0d0785ad6e493cf8cf718ed89a6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d79d87d4c0f7f0d0785ad6e493cf8cf718ed89a6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c4820acc3c723b55b774d4cf017839bcbbfe40dd9de52b4eeb240b71f191c40c [INFO] running `Command { std: "docker" "start" "-a" "c4820acc3c723b55b774d4cf017839bcbbfe40dd9de52b4eeb240b71f191c40c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c4820acc3c723b55b774d4cf017839bcbbfe40dd9de52b4eeb240b71f191c40c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c4820acc3c723b55b774d4cf017839bcbbfe40dd9de52b4eeb240b71f191c40c", kill_on_drop: false }` [INFO] [stdout] c4820acc3c723b55b774d4cf017839bcbbfe40dd9de52b4eeb240b71f191c40c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d79d87d4c0f7f0d0785ad6e493cf8cf718ed89a6" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 243ae23ec34055b85bc87cd4b8bc10a1689147147d840a39bbdcd786b0e496e7 [INFO] running `Command { std: "docker" "start" "-a" "243ae23ec34055b85bc87cd4b8bc10a1689147147d840a39bbdcd786b0e496e7", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.89 [INFO] [stderr] Compiling unicode-ident v1.0.13 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling libc v0.2.161 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling serde v1.0.214 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling num-rational v0.3.2 [INFO] [stderr] Compiling rustversion v1.0.18 [INFO] [stderr] Compiling regex-automata v0.4.8 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Compiling thiserror v1.0.68 [INFO] [stderr] Compiling anstyle-parse v0.2.6 [INFO] [stderr] Compiling anyhow v1.0.92 [INFO] [stderr] Compiling ndarray v0.14.0 [INFO] [stderr] Compiling colorchoice v1.0.3 [INFO] [stderr] Compiling anstyle-query v1.1.2 [INFO] [stderr] Compiling matrixmultiply v0.2.4 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling fixedbitset v0.2.0 [INFO] [stderr] Compiling anstream v0.6.18 [INFO] [stderr] Compiling array-macro v1.0.5 [INFO] [stderr] Compiling bio v0.35.0 [INFO] [stderr] Compiling miniz_oxide v0.8.0 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling triple_accel v0.3.4 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling strum v0.20.0 [INFO] [stderr] Compiling clap_builder v4.5.20 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling flate2 v1.0.34 [INFO] [stderr] Compiling syn v2.0.87 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling memmap2 v0.9.5 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.3.1 [INFO] [stderr] Compiling approx v0.4.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling simba v0.4.0 [INFO] [stderr] Compiling smitten v0.1.0 (https://github.com/Dfam-consortium/Smitten.git#1d2faac3) [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling enum-map v0.6.6 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.214 [INFO] [stderr] Compiling thiserror-impl v1.0.68 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling clap_derive v4.5.18 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling clap v4.5.20 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling nalgebra v0.26.2 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Compiling csv v1.3.0 [INFO] [stderr] Compiling statrs v0.14.0 [INFO] [stderr] Compiling DisCoord v0.3.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::fs` [INFO] [stdout] --> src/main.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use std::fs; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `label` [INFO] [stdout] --> src/main.rs:225:17 [INFO] [stdout] | [INFO] [stdout] 225 | let label = if !accession.is_empty() { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_label` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_and_validate_stockholm_old` is never used [INFO] [stdout] --> src/main.rs:93:4 [INFO] [stdout] | [INFO] [stdout] 93 | fn parse_and_validate_stockholm_old(file_path: &str, genome_map: &HashMap>, output_path: &Option, is_gzip: bool, ... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `process_stockholm_record_old` is never used [INFO] [stdout] --> src/main.rs:360:4 [INFO] [stdout] | [INFO] [stdout] 360 | fn process_stockholm_record_old( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 57.43s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.26.2 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "243ae23ec34055b85bc87cd4b8bc10a1689147147d840a39bbdcd786b0e496e7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "243ae23ec34055b85bc87cd4b8bc10a1689147147d840a39bbdcd786b0e496e7", kill_on_drop: false }` [INFO] [stdout] 243ae23ec34055b85bc87cd4b8bc10a1689147147d840a39bbdcd786b0e496e7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d79d87d4c0f7f0d0785ad6e493cf8cf718ed89a6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4a015da692832d3c571b8b815ff7d59d567c33be41846b514b15ecc5a4d78985 [INFO] running `Command { std: "docker" "start" "-a" "4a015da692832d3c571b8b815ff7d59d567c33be41846b514b15ecc5a4d78985", kill_on_drop: false }` [INFO] [stderr] Compiling DisCoord v0.3.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::fs` [INFO] [stdout] --> src/main.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use std::fs; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `label` [INFO] [stdout] --> src/main.rs:225:17 [INFO] [stdout] | [INFO] [stdout] 225 | let label = if !accession.is_empty() { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_label` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_and_validate_stockholm_old` is never used [INFO] [stdout] --> src/main.rs:93:4 [INFO] [stdout] | [INFO] [stdout] 93 | fn parse_and_validate_stockholm_old(file_path: &str, genome_map: &HashMap>, output_path: &Option, is_gzip: bool, ... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `process_stockholm_record_old` is never used [INFO] [stdout] --> src/main.rs:360:4 [INFO] [stdout] | [INFO] [stdout] 360 | fn process_stockholm_record_old( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.42s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.26.2 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "4a015da692832d3c571b8b815ff7d59d567c33be41846b514b15ecc5a4d78985", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4a015da692832d3c571b8b815ff7d59d567c33be41846b514b15ecc5a4d78985", kill_on_drop: false }` [INFO] [stdout] 4a015da692832d3c571b8b815ff7d59d567c33be41846b514b15ecc5a4d78985