[INFO] fetching crate zoe 0.0.21... [INFO] building zoe-0.0.21 against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237-1 [INFO] extracting crate zoe 0.0.21 into /workspace/builds/worker-2-tc1/source [INFO] removed /workspace/builds/worker-2-tc1/source/.cargo/config.toml [INFO] started tweaking crates.io crate zoe 0.0.21 [INFO] finished tweaking crates.io crate zoe 0.0.21 [INFO] tweaked toml for crates.io crate zoe 0.0.21 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate zoe 0.0.21 on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate zoe 0.0.21 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded multiversion-macros v0.8.0 [INFO] [stderr] Downloaded multiversion v0.8.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ee47b9c147db66a3d097a4bcacbacc684e563df72e9395cbf0fe7d12f6430f3d [INFO] running `Command { std: "docker" "start" "-a" "ee47b9c147db66a3d097a4bcacbacc684e563df72e9395cbf0fe7d12f6430f3d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ee47b9c147db66a3d097a4bcacbacc684e563df72e9395cbf0fe7d12f6430f3d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ee47b9c147db66a3d097a4bcacbacc684e563df72e9395cbf0fe7d12f6430f3d", kill_on_drop: false }` [INFO] [stdout] ee47b9c147db66a3d097a4bcacbacc684e563df72e9395cbf0fe7d12f6430f3d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9ba91e6c97130e1420f699a7518cba997caf79132371ccc5edfa8e76af577b59 [INFO] running `Command { std: "docker" "start" "-a" "9ba91e6c97130e1420f699a7518cba997caf79132371ccc5edfa8e76af577b59", kill_on_drop: false }` [INFO] [stderr] Compiling rand_core v0.9.3 [INFO] [stderr] Compiling rand_xoshiro v0.7.0 [INFO] [stderr] Compiling zoe v0.0.21 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 4.46s [INFO] running `Command { std: "docker" "inspect" "9ba91e6c97130e1420f699a7518cba997caf79132371ccc5edfa8e76af577b59", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9ba91e6c97130e1420f699a7518cba997caf79132371ccc5edfa8e76af577b59", kill_on_drop: false }` [INFO] [stdout] 9ba91e6c97130e1420f699a7518cba997caf79132371ccc5edfa8e76af577b59 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 713b0336e49357da90b0d76f323595f87f00c4eda725d3c76641fce3c3af09e3 [INFO] running `Command { std: "docker" "start" "-a" "713b0336e49357da90b0d76f323595f87f00c4eda725d3c76641fce3c3af09e3", kill_on_drop: false }` [INFO] [stderr] Compiling zoe v0.0.21 (/opt/rustwide/workdir) [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/NC_007362.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/sw/mod.rs:317:42 [INFO] [stdout] | [INFO] [stdout] 317 | pub(crate) static REFERENCE: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/NC_007362.1.txt")); // H5 HA [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/NC_026433.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/sw/mod.rs:318:38 [INFO] [stdout] | [INFO] [stdout] 318 | pub(crate) static QUERY: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/NC_026433.1.txt")); // H1 HA1 [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/CY137594.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/sw/test.rs:243:20 [INFO] [stdout] | [INFO] [stdout] 243 | let v: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/CY137594.txt")); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/CY137594.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/sw/test.rs:273:20 [INFO] [stdout] | [INFO] [stdout] 273 | let v: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/CY137594.txt")); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KJ907631.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/profile.rs:556:37 [INFO] [stdout] | [INFO] [stdout] 556 | pub(crate) static DATA: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KJ907631.1.txt")); // H5 HA, complete... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/CY137594.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/alignment/profile_set.rs:582:24 [INFO] [stdout] | [INFO] [stdout] 582 | let v: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/CY137594.txt")); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KJ907623.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/distance/dna/test.rs:5:40 [INFO] [stdout] | [INFO] [stdout] 5 | pub(crate) static LONG_READ_1: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KJ907623.1.txt")); // H5 HA, compl... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KJ907631.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/distance/dna/test.rs:6:40 [INFO] [stdout] | [INFO] [stdout] 6 | pub(crate) static LONG_READ_2: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KJ907631.1.txt")); // H5 HA, compl... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KP326324.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/distance/dna/test.rs:12:33 [INFO] [stdout] | [INFO] [stdout] 12 | static MID_READ_GAPS_1: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KP326324.1.txt")); // H5 HA, complete CDS... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read `/opt/rustwide/workdir/tests/data/KC684446.1.txt`: No such file or directory (os error 2) [INFO] [stdout] --> src/distance/dna/test.rs:13:33 [INFO] [stdout] | [INFO] [stdout] 13 | static MID_READ_GAPS_2: &[u8] = include_bytes!(concat!(env!("CARGO_MANIFEST_DIR"), "/tests/data/KC684446.1.txt")); // H5 HA, complete CDS... [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `zoe` (lib test) due to 10 previous errors [INFO] running `Command { std: "docker" "inspect" "713b0336e49357da90b0d76f323595f87f00c4eda725d3c76641fce3c3af09e3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "713b0336e49357da90b0d76f323595f87f00c4eda725d3c76641fce3c3af09e3", kill_on_drop: false }` [INFO] [stdout] 713b0336e49357da90b0d76f323595f87f00c4eda725d3c76641fce3c3af09e3