[INFO] fetching crate rust-bio-tools 0.42.2...
[INFO] building rust-bio-tools-0.42.2 against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237-1
[INFO] extracting crate rust-bio-tools 0.42.2 into /workspace/builds/worker-2-tc1/source
[INFO] removed /workspace/builds/worker-2-tc1/source/.cargo/config
[INFO] started tweaking crates.io crate rust-bio-tools 0.42.2
[INFO] finished tweaking crates.io crate rust-bio-tools 0.42.2
[INFO] tweaked toml for crates.io crate rust-bio-tools 0.42.2 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate rust-bio-tools 0.42.2 on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate rust-bio-tools 0.42.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded GSL-sys v3.0.0
[INFO] [stderr]   Downloaded pest_derive v2.7.9
[INFO] [stderr]   Downloaded slug v0.1.5
[INFO] [stderr]   Downloaded ordered-float v0.5.2
[INFO] [stderr]   Downloaded approx v0.4.0
[INFO] [stderr]   Downloaded getset v0.1.2
[INFO] [stderr]   Downloaded simba v0.5.1
[INFO] [stderr]   Downloaded rust-htslib v0.46.0
[INFO] [stderr]   Downloaded deunicode v1.4.3
[INFO] [stderr]   Downloaded parse-zoneinfo v0.3.0
[INFO] [stderr]   Downloaded pest_meta v2.7.9
[INFO] [stderr]   Downloaded tera v1.19.1
[INFO] [stderr]   Downloaded nalgebra v0.27.1
[INFO] [stderr]   Downloaded rocksdb v0.19.0
[INFO] [stderr]   Downloaded bio v0.39.2
[INFO] [stderr]   Downloaded GSL v7.0.0
[INFO] [stderr]   Downloaded bstr v1.9.1
[INFO] [stderr]   Downloaded pest v2.7.9
[INFO] [stderr]   Downloaded statrs v0.15.0
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded ignore v0.4.22
[INFO] [stderr]   Downloaded pest_generator v2.7.9
[INFO] [stderr]   Downloaded cc v1.0.92
[INFO] [stderr]   Downloaded chrono-tz v0.8.6
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded libloading v0.8.3
[INFO] [stderr]   Downloaded jobserver v0.1.28
[INFO] [stderr]   Downloaded xlsxwriter v0.6.0
[INFO] [stderr]   Downloaded chrono-tz-build v0.2.1
[INFO] [stderr]   Downloaded zstd-sys v2.0.10+zstd.1.5.6
[INFO] [stderr]   Downloaded libxlsxwriter-sys v1.1.5
[INFO] [stderr]   Downloaded globset v0.4.14
[INFO] [stderr]   Downloaded curl-sys v0.4.72+curl-8.6.0
[INFO] [stderr]   Downloaded lz-str v0.1.0
[INFO] [stderr]   Downloaded libz-sys v1.1.16
[INFO] [stderr]   Downloaded jsonm v0.1.4
[INFO] [stderr]   Downloaded librocksdb-sys v0.8.3+7.4.4
[INFO] [stderr]   Downloaded openssl-src v300.2.3+3.2.1
[INFO] [stderr]   Downloaded hts-sys v2.1.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a8ba6344ab094973ba73613e0bcf2c9910b2114d11b6a896f2d816ffe7989743
[INFO] running `Command { std: "docker" "start" "-a" "a8ba6344ab094973ba73613e0bcf2c9910b2114d11b6a896f2d816ffe7989743", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a8ba6344ab094973ba73613e0bcf2c9910b2114d11b6a896f2d816ffe7989743", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a8ba6344ab094973ba73613e0bcf2c9910b2114d11b6a896f2d816ffe7989743", kill_on_drop: false }`
[INFO] [stdout] a8ba6344ab094973ba73613e0bcf2c9910b2114d11b6a896f2d816ffe7989743
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2a8b3c9c56b6349627e2910d985d4fe4a86714cff0a527d9744ab690050a37f3
[INFO] running `Command { std: "docker" "start" "-a" "2a8b3c9c56b6349627e2910d985d4fe4a86714cff0a527d9744ab690050a37f3", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling autocfg v1.2.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.79
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling syn v1.0.109
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[INFO] [stderr]    Compiling futures v0.1.31
[INFO] [stderr]    Compiling serde v1.0.197
[INFO] [stderr]    Compiling bitflags v2.5.0
[INFO] [stderr]    Compiling libloading v0.8.3
[INFO] [stderr]    Compiling unicode-normalization v0.1.23
[INFO] [stderr]    Compiling unicode-bidi v0.3.15
[INFO] [stderr]    Compiling thiserror v1.0.58
[INFO] [stderr]    Compiling parking_lot_core v0.6.3
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling rustix v0.38.32
[INFO] [stderr]    Compiling autocfg v0.1.8
[INFO] [stderr]    Compiling phf_shared v0.11.2
[INFO] [stderr]    Compiling parking_lot v0.9.0
[INFO] [stderr]    Compiling clang-sys v1.7.0
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[INFO] [stderr]    Compiling linux-raw-sys v0.4.13
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[INFO] [stderr]    Compiling phf v0.11.2
[INFO] [stderr]    Compiling ucd-trie v0.1.6
[INFO] [stderr]    Compiling quick-error v1.2.3
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[INFO] [stderr]    Compiling gimli v0.28.1
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[INFO] [stderr]    Compiling native-tls v0.2.11
[INFO] [stderr]    Compiling crc32fast v1.4.0
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[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling futures-cpupool v0.1.8
[INFO] [stderr]    Compiling rand_os v0.1.3
[INFO] [stderr]    Compiling idna v0.2.3
[INFO] [stderr]    Compiling rand_xorshift v0.1.1
[INFO] [stderr]    Compiling rand_isaac v0.1.1
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[INFO] [stderr]    Compiling rand_hc v0.1.0
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[INFO] [stderr]    Compiling GSL-sys v3.0.0
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[INFO] [stderr]    Compiling publicsuffix v1.5.6
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling pest_generator v2.7.9
[INFO] [stderr]    Compiling ignore v0.4.22
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[INFO] [stderr]    Compiling failure v0.1.8
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[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling try_from v0.3.2
[INFO] [stderr]    Compiling yaml-rust v0.3.5
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling deunicode v1.4.3
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling dtoa v0.4.8
[INFO] [stderr]    Compiling fixedbitset v0.4.2
[INFO] [stderr]    Compiling petgraph v0.6.4
[INFO] [stderr]    Compiling slug v0.1.5
[INFO] [stderr]    Compiling unic-segment v0.9.0
[INFO] [stderr]    Compiling pest_derive v2.7.9
[INFO] [stderr]    Compiling enum-map v1.1.1
[INFO] [stderr]    Compiling parking_lot v0.12.1
[INFO] [stderr]    Compiling libxlsxwriter-sys v1.1.5
[INFO] [stderr]    Compiling flate2 v1.0.28
[INFO] [stderr]    Compiling globwalk v0.8.1
[INFO] [stderr]    Compiling uuid v0.7.4
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling librocksdb-sys v0.8.3+7.4.4
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]    Compiling ndarray v0.15.6
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note:  "cc" "-Wl,--version-script=/tmp/rustcBRkbWq/list" "-Wl,--no-undefined-version" "-m64" "/tmp/rustcBRkbWq/symbols.o" "<1 object files omitted>" "/tmp/rustcBRkbWq/rmeta.o" "-Wl,--as-needed" "-Wl,-Bdynamic" "-lgsl" "-lgslcblas" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibc-c64eddf1d3f0dc2a.rlib" "-Wl,-Bdynamic" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-689ca45c0c8af91f.so" "-Wl,-Bstatic" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-*.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcBRkbWq/raw-dylibs" "-B<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/libgsl_sys-5ecbdcd4308e50e9.so" "-shared" "-Wl,-soname=libgsl_sys-5ecbdcd4308e50e9.so" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: some arguments are omitted. use `--verbose` to show all linker arguments
[INFO] [stdout]   = note: rust-lld: error: unable to find library -lgsl
[INFO] [stdout]           rust-lld: error: unable to find library -lgslcblas
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `GSL-sys` (lib) due to 1 previous error
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "2a8b3c9c56b6349627e2910d985d4fe4a86714cff0a527d9744ab690050a37f3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2a8b3c9c56b6349627e2910d985d4fe4a86714cff0a527d9744ab690050a37f3", kill_on_drop: false }`
[INFO] [stdout] 2a8b3c9c56b6349627e2910d985d4fe4a86714cff0a527d9744ab690050a37f3