[INFO] fetching crate microbiorust-py 0.1.1...
[INFO] building microbiorust-py-0.1.1 against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237-1
[INFO] extracting crate microbiorust-py 0.1.1 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate microbiorust-py 0.1.1
[INFO] finished tweaking crates.io crate microbiorust-py 0.1.1
[INFO] tweaked toml for crates.io crate microbiorust-py 0.1.1 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate microbiorust-py 0.1.1 on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate microbiorust-py 0.1.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded target-lexicon v0.13.2
[INFO] [stderr]   Downloaded pyo3-build-config v0.25.1
[INFO] [stderr]   Downloaded unindent v0.2.4
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.25.1
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded feature-probe v0.1.1
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded bytecount v0.6.9
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded matrixmultiply v0.3.10
[INFO] [stderr]   Downloaded bv v0.11.1
[INFO] [stderr]   Downloaded wide v0.7.33
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded bumpalo v3.18.1
[INFO] [stderr]   Downloaded cc v1.2.27
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded safe_arch v0.7.4
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded ndarray v0.16.1
[INFO] [stderr]   Downloaded simba v0.9.0
[INFO] [stderr]   Downloaded pyo3-ffi v0.25.1
[INFO] [stderr]   Downloaded ordered-float v5.0.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded rawpointer v0.2.1
[INFO] [stderr]   Downloaded microBioRust v0.1.2
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded pyo3-macros v0.25.1
[INFO] [stderr]   Downloaded protein-translate v0.2.0
[INFO] [stderr]   Downloaded nalgebra v0.33.2
[INFO] [stderr]   Downloaded pyo3 v0.25.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7a3d06786b3e352972d4319de15cdb7ca4ace0997b4456d26a9bdb3920aad2db
[INFO] running `Command { std: "docker" "start" "-a" "7a3d06786b3e352972d4319de15cdb7ca4ace0997b4456d26a9bdb3920aad2db", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7a3d06786b3e352972d4319de15cdb7ca4ace0997b4456d26a9bdb3920aad2db", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7a3d06786b3e352972d4319de15cdb7ca4ace0997b4456d26a9bdb3920aad2db", kill_on_drop: false }`
[INFO] [stdout] 7a3d06786b3e352972d4319de15cdb7ca4ace0997b4456d26a9bdb3920aad2db
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4f6ab520cc6b4949db912201c58bb489401b6315f696058ee760a5b20746577c
[INFO] running `Command { std: "docker" "start" "-a" "4f6ab520cc6b4949db912201c58bb489401b6315f696058ee760a5b20746577c", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.95
[INFO] [stderr]    Compiling unicode-ident v1.0.18
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling target-lexicon v0.13.2
[INFO] [stderr]    Compiling libc v0.2.174
[INFO] [stderr]    Compiling zerocopy v0.8.26
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling cfg-if v1.0.1
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling bytemuck v1.23.1
[INFO] [stderr]    Compiling rustversion v1.0.21
[INFO] [stderr]    Compiling typenum v1.18.0
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling pyo3-build-config v0.25.1
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling allocator-api2 v0.2.21
[INFO] [stderr]    Compiling foldhash v0.1.5
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling equivalent v1.0.2
[INFO] [stderr]    Compiling anstyle-parse v0.2.7
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling hashbrown v0.15.4
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling pyo3-macros-backend v0.25.1
[INFO] [stderr]    Compiling pyo3-ffi v0.25.1
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling simba v0.9.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling anyhow v1.0.98
[INFO] [stderr]    Compiling colorchoice v1.0.4
[INFO] [stderr]    Compiling thiserror v2.0.12
[INFO] [stderr]    Compiling anstyle-query v1.1.3
[INFO] [stderr]    Compiling anstream v0.6.19
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling indexmap v2.9.0
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling clap_builder v4.5.40
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling petgraph v0.8.2
[INFO] [stderr]    Compiling pyo3 v0.25.1
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling clap_derive v4.5.40
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling iana-time-zone v0.1.63
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling chrono v0.4.41
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling protein-translate v0.2.0
[INFO] [stderr]    Compiling pyo3-macros v0.25.1
[INFO] [stderr]    Compiling indoc v2.0.6
[INFO] [stderr]    Compiling unindent v0.2.4
[INFO] [stderr]    Compiling clap v4.5.40
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling microBioRust v0.1.2
[INFO] [stderr]    Compiling microbiorust-py v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 50s
[INFO] running `Command { std: "docker" "inspect" "4f6ab520cc6b4949db912201c58bb489401b6315f696058ee760a5b20746577c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4f6ab520cc6b4949db912201c58bb489401b6315f696058ee760a5b20746577c", kill_on_drop: false }`
[INFO] [stdout] 4f6ab520cc6b4949db912201c58bb489401b6315f696058ee760a5b20746577c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a08690a4dd2ca4ceef993eea5c8d6b1dac7fa6c1effb9ae42897b261de2987c4
[INFO] running `Command { std: "docker" "start" "-a" "a08690a4dd2ca4ceef993eea5c8d6b1dac7fa6c1effb9ae42897b261de2987c4", kill_on_drop: false }`
[INFO] [stderr]    Compiling microbiorust-py v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.81s
[INFO] running `Command { std: "docker" "inspect" "a08690a4dd2ca4ceef993eea5c8d6b1dac7fa6c1effb9ae42897b261de2987c4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a08690a4dd2ca4ceef993eea5c8d6b1dac7fa6c1effb9ae42897b261de2987c4", kill_on_drop: false }`
[INFO] [stdout] a08690a4dd2ca4ceef993eea5c8d6b1dac7fa6c1effb9ae42897b261de2987c4