[INFO] fetching crate kractor 2.0.0...
[INFO] building kractor-2.0.0 against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237-1
[INFO] extracting crate kractor 2.0.0 into /workspace/builds/worker-2-tc1/source
[INFO] started tweaking crates.io crate kractor 2.0.0
[INFO] finished tweaking crates.io crate kractor 2.0.0
[INFO] tweaked toml for crates.io crate kractor 2.0.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate kractor 2.0.0 on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate kractor 2.0.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-fasta v0.52.0
[INFO] [stderr]   Downloaded noodles-core v0.17.0
[INFO] [stderr]   Downloaded niffler v3.0.0
[INFO] [stderr]   Downloaded noodles-fastq v0.18.0
[INFO] [stderr]   Downloaded libz-rs-sys v0.5.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.39.0
[INFO] [stderr]   Downloaded zlib-rs v0.5.0
[INFO] [stderr]   Downloaded noodles v0.97.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f6247fe90f023c6e5ded9b43aa217f92b337fa8fb3ab2da420cd9f799f36d3aa
[INFO] running `Command { std: "docker" "start" "-a" "f6247fe90f023c6e5ded9b43aa217f92b337fa8fb3ab2da420cd9f799f36d3aa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f6247fe90f023c6e5ded9b43aa217f92b337fa8fb3ab2da420cd9f799f36d3aa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f6247fe90f023c6e5ded9b43aa217f92b337fa8fb3ab2da420cd9f799f36d3aa", kill_on_drop: false }`
[INFO] [stdout] f6247fe90f023c6e5ded9b43aa217f92b337fa8fb3ab2da420cd9f799f36d3aa
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 901d7e1f8e76728038f628f46b2b70f48ff767501767a63083d4326b16180711
[INFO] running `Command { std: "docker" "start" "-a" "901d7e1f8e76728038f628f46b2b70f48ff767501767a63083d4326b16180711", kill_on_drop: false }`
[INFO] [stderr]    Compiling zlib-rs v0.5.0
[INFO] [stderr]    Compiling cc v1.2.19
[INFO] [stderr]    Compiling tracing-core v0.1.33
[INFO] [stderr]    Compiling miniz_oxide v0.8.8
[INFO] [stderr]    Compiling bstr v1.12.0
[INFO] [stderr]    Compiling gimli v0.28.1
[INFO] [stderr]    Compiling eyre v0.6.12
[INFO] [stderr]    Compiling anstream v0.6.18
[INFO] [stderr]    Compiling syn v2.0.100
[INFO] [stderr]    Compiling miniz_oxide v0.7.4
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling object v0.32.2
[INFO] [stderr]    Compiling rustix v1.0.5
[INFO] [stderr]    Compiling getrandom v0.3.2
[INFO] [stderr]    Compiling is-terminal v0.4.16
[INFO] [stderr]    Compiling humantime v2.2.0
[INFO] [stderr]    Compiling crossbeam v0.8.4
[INFO] [stderr]    Compiling clap_builder v4.5.36
[INFO] [stderr]    Compiling tracing-subscriber v0.3.19
[INFO] [stderr]    Compiling tracing v0.1.41
[INFO] [stderr]    Compiling noodles-core v0.17.0
[INFO] [stderr]    Compiling noodles-fastq v0.18.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling backtrace v0.3.71
[INFO] [stderr]    Compiling tracing-error v0.2.1
[INFO] [stderr]    Compiling color-spantrace v0.2.1
[INFO] [stderr]    Compiling tempfile v3.19.1
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling bzip2 v0.5.2
[INFO] [stderr]    Compiling addr2line v0.21.0
[INFO] [stderr]    Compiling env_logger v0.10.2
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling clap_derive v4.5.32
[INFO] [stderr]    Compiling libz-rs-sys v0.5.0
[INFO] [stderr]    Compiling flate2 v1.1.1
[INFO] [stderr]    Compiling thiserror v2.0.12
[INFO] [stderr]    Compiling color-eyre v0.6.3
[INFO] [stderr]    Compiling clap v4.5.36
[INFO] [stderr]    Compiling noodles-bgzf v0.39.0
[INFO] [stderr]    Compiling niffler v3.0.0
[INFO] [stderr]    Compiling noodles-fasta v0.52.0
[INFO] [stderr]    Compiling noodles v0.97.0
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling kractor v2.0.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 37.45s
[INFO] running `Command { std: "docker" "inspect" "901d7e1f8e76728038f628f46b2b70f48ff767501767a63083d4326b16180711", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "901d7e1f8e76728038f628f46b2b70f48ff767501767a63083d4326b16180711", kill_on_drop: false }`
[INFO] [stdout] 901d7e1f8e76728038f628f46b2b70f48ff767501767a63083d4326b16180711
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5d48e8e6ec14e5c715ab48146d26367e9a05f0b950cf8cf6001fe81501ab8699
[INFO] running `Command { std: "docker" "start" "-a" "5d48e8e6ec14e5c715ab48146d26367e9a05f0b950cf8cf6001fe81501ab8699", kill_on_drop: false }`
[INFO] [stderr]    Compiling kractor v2.0.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `reads_parsed`
[INFO] [stdout]    --> src/extract.rs:213:14
[INFO] [stdout]     |
[INFO] [stdout] 213 |         let (reads_parsed, reads_output) = process_single_end(
[INFO] [stdout]     |              ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reads_parsed`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `reads_parsed`
[INFO] [stdout]    --> src/extract.rs:242:14
[INFO] [stdout]     |
[INFO] [stdout] 242 |         let (reads_parsed, reads_output) = process_single_end(
[INFO] [stdout]     |              ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reads_parsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `reads_parsed1`
[INFO] [stdout]    --> src/extract.rs:296:15
[INFO] [stdout]     |
[INFO] [stdout] 296 |         let ((reads_parsed1, reads_output1), (reads_parsed2, reads_output2)) = process_paired_end(
[INFO] [stdout]     |               ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reads_parsed1`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `reads_parsed2`
[INFO] [stdout]    --> src/extract.rs:296:47
[INFO] [stdout]     |
[INFO] [stdout] 296 |         let ((reads_parsed1, reads_output1), (reads_parsed2, reads_output2)) = process_paired_end(
[INFO] [stdout]     |                                               ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reads_parsed2`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `reads_parsed1`
[INFO] [stdout]    --> src/extract.rs:334:15
[INFO] [stdout]     |
[INFO] [stdout] 334 |         let ((reads_parsed1, reads_output1), (reads_parsed2, reads_output2)) = process_paired_end(
[INFO] [stdout]     |               ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reads_parsed1`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `reads_parsed2`
[INFO] [stdout]    --> src/extract.rs:334:47
[INFO] [stdout]     |
[INFO] [stdout] 334 |         let ((reads_parsed1, reads_output1), (reads_parsed2, reads_output2)) = process_paired_end(
[INFO] [stdout]     |                                               ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reads_parsed2`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `taxon_counts`
[INFO] [stdout]    --> src/parsers/kraken.rs:371:29
[INFO] [stdout]     |
[INFO] [stdout] 371 |         let (reads_to_save, taxon_counts) =
[INFO] [stdout]     |                             ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_taxon_counts`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `taxon_counts`
[INFO] [stdout]    --> src/parsers/kraken.rs:392:29
[INFO] [stdout]     |
[INFO] [stdout] 392 |         let (reads_to_save, taxon_counts) =
[INFO] [stdout]     |                             ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_taxon_counts`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `taxon_counts`
[INFO] [stdout]    --> src/parsers/kraken.rs:453:29
[INFO] [stdout]     |
[INFO] [stdout] 453 |         let (reads_to_save, taxon_counts) = process_kraken_output(&file_path, false, &[]).unwrap();
[INFO] [stdout]     |                             ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_taxon_counts`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `taxon_counts`
[INFO] [stdout]    --> src/parsers/kraken.rs:455:29
[INFO] [stdout]     |
[INFO] [stdout] 455 |         let (reads_to_save, taxon_counts) = process_kraken_output(&file_path, true, &[]).unwrap();
[INFO] [stdout]     |                             ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_taxon_counts`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 2.19s
[INFO] running `Command { std: "docker" "inspect" "5d48e8e6ec14e5c715ab48146d26367e9a05f0b950cf8cf6001fe81501ab8699", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5d48e8e6ec14e5c715ab48146d26367e9a05f0b950cf8cf6001fe81501ab8699", kill_on_drop: false }`
[INFO] [stdout] 5d48e8e6ec14e5c715ab48146d26367e9a05f0b950cf8cf6001fe81501ab8699