[INFO] fetching crate gia 0.2.23... [INFO] building gia-0.2.23 against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237-1 [INFO] extracting crate gia 0.2.23 into /workspace/builds/worker-3-tc1/source [INFO] started tweaking crates.io crate gia 0.2.23 [INFO] finished tweaking crates.io crate gia 0.2.23 [INFO] tweaked toml for crates.io crate gia 0.2.23 written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate gia 0.2.23 on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate gia 0.2.23 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded thiserror-impl v1.0.59 [INFO] [stderr] Downloaded proc-macro2 v1.0.81 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded faiquery v0.1.3 [INFO] [stderr] Downloaded thiserror v1.0.59 [INFO] [stderr] Downloaded bedrs_derive v0.1.0 [INFO] [stderr] Downloaded memmap2 v0.7.1 [INFO] [stderr] Downloaded serde v1.0.199 [INFO] [stderr] Downloaded niffler v2.5.0 [INFO] [stderr] Downloaded bedrs v0.2.24 [INFO] [stderr] Downloaded rust-htslib v0.46.0 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded getset v0.1.2 [INFO] [stderr] Downloaded cc v1.0.96 [INFO] [stderr] Downloaded core_affinity v0.8.1 [INFO] [stderr] Downloaded syn v2.0.60 [INFO] [stderr] Downloaded human-sort v0.2.2 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded serde_derive v1.0.199 [INFO] [stderr] Downloaded gzp v0.11.3 [INFO] [stderr] Downloaded libz-sys v1.1.16 [INFO] [stderr] Downloaded hts-sys v2.1.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 04ef02da84d5932b35753e19361c9cb43b41821ebcb16524f6e3a4d569a2fdb2 [INFO] running `Command { std: "docker" "start" "-a" "04ef02da84d5932b35753e19361c9cb43b41821ebcb16524f6e3a4d569a2fdb2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "04ef02da84d5932b35753e19361c9cb43b41821ebcb16524f6e3a4d569a2fdb2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "04ef02da84d5932b35753e19361c9cb43b41821ebcb16524f6e3a4d569a2fdb2", kill_on_drop: false }` [INFO] [stdout] 04ef02da84d5932b35753e19361c9cb43b41821ebcb16524f6e3a4d569a2fdb2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] bb238f1cae2cf185f80a4812e5206000facec9abc1daa47e78d57cb8fb0a959f [INFO] running `Command { std: "docker" "start" "-a" "bb238f1cae2cf185f80a4812e5206000facec9abc1daa47e78d57cb8fb0a959f", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.81 [INFO] [stderr] Compiling libc v0.2.154 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling thiserror v1.0.59 [INFO] [stderr] Compiling serde v1.0.199 [INFO] [stderr] Compiling crc32fast v1.4.0 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling tinyvec v1.6.0 [INFO] [stderr] Compiling regex-automata v0.4.6 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling miniz_oxide v0.7.2 [INFO] [stderr] Compiling num-traits v0.2.18 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling unicode-bidi v0.3.15 [INFO] [stderr] Compiling allocator-api2 v0.2.18 [INFO] [stderr] Compiling futures-sink v0.3.30 [INFO] [stderr] Compiling futures-core v0.3.30 [INFO] [stderr] Compiling either v1.11.0 [INFO] [stderr] Compiling clap_builder v4.5.2 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling bytes v1.6.0 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling human-sort v0.2.2 [INFO] [stderr] Compiling spin v0.9.8 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling flate2 v1.0.30 [INFO] [stderr] Compiling unicode-normalization v0.1.23 [INFO] [stderr] Compiling jobserver v0.1.31 [INFO] [stderr] Compiling getrandom v0.2.14 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling parking_lot_core v0.9.10 [INFO] [stderr] Compiling memmap2 v0.7.1 [INFO] [stderr] Compiling memmap2 v0.9.4 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling nanorand v0.7.0 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling core_affinity v0.8.1 [INFO] [stderr] Compiling cc v1.0.96 [INFO] [stderr] Compiling syn v2.0.60 [INFO] [stderr] Compiling idna v0.5.0 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling url v2.5.0 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Compiling hts-sys v2.1.1 [INFO] [stderr] Compiling libz-sys v1.1.16 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling getset v0.1.2 [INFO] [stderr] Compiling regex v1.10.4 [INFO] [stderr] Compiling bstr v1.9.1 [INFO] [stderr] Compiling thiserror-impl v1.0.59 [INFO] [stderr] Compiling serde_derive v1.0.199 [INFO] [stderr] Compiling pin-project-internal v1.1.5 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling clap_derive v4.5.4 [INFO] [stderr] Compiling bedrs_derive v0.1.0 [INFO] [stderr] Compiling niffler v2.5.0 [INFO] [stderr] Compiling bio-types v1.0.1 [INFO] [stderr] Compiling rust-htslib v0.46.0 [INFO] [stderr] Compiling pin-project v1.1.5 [INFO] [stderr] Compiling flume v0.10.14 [INFO] [stderr] Compiling gzp v0.11.3 [INFO] [stderr] Compiling clap v4.5.4 [INFO] [stderr] Compiling csv v1.3.0 [INFO] [stderr] Compiling bedrs v0.2.24 [INFO] [stderr] Compiling dashmap v5.5.3 [INFO] [stderr] Compiling faiquery v0.1.3 [INFO] [stderr] Compiling gia v0.2.23 (/opt/rustwide/workdir) [INFO] [stdout] warning: struct `NamedPair` is never constructed [INFO] [stdout] --> src/io/mod.rs:27:12 [INFO] [stdout] | [INFO] [stdout] 27 | pub struct NamedPair<'a> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `UnnamedPair` is never constructed [INFO] [stdout] --> src/io/mod.rs:37:12 [INFO] [stdout] | [INFO] [stdout] 37 | pub struct UnnamedPair { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's named elsewhere is confusing [INFO] [stdout] --> src/cli/growth.rs:89:90 [INFO] [stdout] | [INFO] [stdout] 89 | pub fn get_genome<'a>(&'a self, translater: Option<&'a Translater>) -> Result> { [INFO] [stdout] | -- -- the lifetime is named here ^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is named here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 89 | pub fn get_genome<'a>(&'a self, translater: Option<&'a Translater>) -> Result>> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 57.29s [INFO] running `Command { std: "docker" "inspect" "bb238f1cae2cf185f80a4812e5206000facec9abc1daa47e78d57cb8fb0a959f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bb238f1cae2cf185f80a4812e5206000facec9abc1daa47e78d57cb8fb0a959f", kill_on_drop: false }` [INFO] [stdout] bb238f1cae2cf185f80a4812e5206000facec9abc1daa47e78d57cb8fb0a959f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 83399180e747ef3aa278dc4f8fee454c7af9f9f5fdc81b0a12b765b077a24c75 [INFO] running `Command { std: "docker" "start" "-a" "83399180e747ef3aa278dc4f8fee454c7af9f9f5fdc81b0a12b765b077a24c75", kill_on_drop: false }` [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling predicates-core v1.0.6 [INFO] [stderr] Compiling float-cmp v0.9.0 [INFO] [stderr] Compiling difflib v0.4.0 [INFO] [stderr] Compiling assert_cmd v2.0.14 [INFO] [stderr] Compiling termtree v0.4.1 [INFO] [stderr] Compiling wait-timeout v0.2.0 [INFO] [stdout] warning: struct `NamedPair` is never constructed [INFO] [stdout] --> src/io/mod.rs:27:12 [INFO] [stdout] | [INFO] [stdout] 27 | pub struct NamedPair<'a> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `UnnamedPair` is never constructed [INFO] [stdout] --> src/io/mod.rs:37:12 [INFO] [stdout] | [INFO] [stdout] 37 | pub struct UnnamedPair { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's named elsewhere is confusing [INFO] [stdout] --> src/cli/growth.rs:89:90 [INFO] [stdout] | [INFO] [stdout] 89 | pub fn get_genome<'a>(&'a self, translater: Option<&'a Translater>) -> Result> { [INFO] [stdout] | -- -- the lifetime is named here ^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is named here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 89 | pub fn get_genome<'a>(&'a self, translater: Option<&'a Translater>) -> Result>> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling predicates-tree v1.0.9 [INFO] [stderr] Compiling predicates v3.1.0 [INFO] [stderr] Compiling gia v0.2.23 (/opt/rustwide/workdir) [INFO] [stdout] warning: struct `NamedPair` is never constructed [INFO] [stdout] --> src/io/mod.rs:27:12 [INFO] [stdout] | [INFO] [stdout] 27 | pub struct NamedPair<'a> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `UnnamedPair` is never constructed [INFO] [stdout] --> src/io/mod.rs:37:12 [INFO] [stdout] | [INFO] [stdout] 37 | pub struct UnnamedPair { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's named elsewhere is confusing [INFO] [stdout] --> src/cli/growth.rs:89:90 [INFO] [stdout] | [INFO] [stdout] 89 | pub fn get_genome<'a>(&'a self, translater: Option<&'a Translater>) -> Result> { [INFO] [stdout] | -- -- the lifetime is named here ^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is named here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 89 | pub fn get_genome<'a>(&'a self, translater: Option<&'a Translater>) -> Result>> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 10.28s [INFO] running `Command { std: "docker" "inspect" "83399180e747ef3aa278dc4f8fee454c7af9f9f5fdc81b0a12b765b077a24c75", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "83399180e747ef3aa278dc4f8fee454c7af9f9f5fdc81b0a12b765b077a24c75", kill_on_drop: false }` [INFO] [stdout] 83399180e747ef3aa278dc4f8fee454c7af9f9f5fdc81b0a12b765b077a24c75