[INFO] fetching crate cytos 1.2.1... [INFO] building cytos-1.2.1 against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237-1 [INFO] extracting crate cytos 1.2.1 into /workspace/builds/worker-3-tc1/source [INFO] started tweaking crates.io crate cytos 1.2.1 [INFO] finished tweaking crates.io crate cytos 1.2.1 [INFO] tweaked toml for crates.io crate cytos 1.2.1 written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate cytos 1.2.1 on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate cytos 1.2.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded simba v0.6.0 [INFO] [stderr] Downloaded enum-map-derive v0.6.0 [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded bytemuck v1.14.0 [INFO] [stderr] Downloaded matrixmultiply v0.3.8 [INFO] [stderr] Downloaded env_logger v0.10.1 [INFO] [stderr] Downloaded errno v0.3.7 [INFO] [stderr] Downloaded safe_arch v0.7.1 [INFO] [stderr] Downloaded wide v0.7.13 [INFO] [stderr] Downloaded rustix v0.38.24 [INFO] [stderr] Downloaded statrs v0.16.0 [INFO] [stderr] Downloaded multimap v0.8.3 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded bio v1.4.0 [INFO] [stderr] Downloaded termcolor v1.4.0 [INFO] [stderr] Downloaded bytecount v0.6.7 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded enum-map v1.1.1 [INFO] [stderr] Downloaded getset v0.1.2 [INFO] [stderr] Downloaded nalgebra v0.29.0 [INFO] [stderr] Downloaded ndarray v0.15.6 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9bd7da84b043ca8e97b81f8370f5b3afa4bb5f5516498c1df371f2f171b7eade [INFO] running `Command { std: "docker" "start" "-a" "9bd7da84b043ca8e97b81f8370f5b3afa4bb5f5516498c1df371f2f171b7eade", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9bd7da84b043ca8e97b81f8370f5b3afa4bb5f5516498c1df371f2f171b7eade", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9bd7da84b043ca8e97b81f8370f5b3afa4bb5f5516498c1df371f2f171b7eade", kill_on_drop: false }` [INFO] [stdout] 9bd7da84b043ca8e97b81f8370f5b3afa4bb5f5516498c1df371f2f171b7eade [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 66dcfeeb4364b4738717d4bd3d989672c29e7966d6137b40689ae145e82aa5ae [INFO] running `Command { std: "docker" "start" "-a" "66dcfeeb4364b4738717d4bd3d989672c29e7966d6137b40689ae145e82aa5ae", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.69 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling libc v0.2.150 [INFO] [stderr] Compiling num-traits v0.2.17 [INFO] [stderr] Compiling memchr v2.6.4 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling serde v1.0.192 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling bytemuck v1.14.0 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling regex-syntax v0.8.2 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling safe_arch v0.7.1 [INFO] [stderr] Compiling rustix v0.38.24 [INFO] [stderr] Compiling thiserror v1.0.50 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling anstyle-parse v0.2.2 [INFO] [stderr] Compiling bitflags v2.4.1 [INFO] [stderr] Compiling anstyle v1.0.4 [INFO] [stderr] Compiling hashbrown v0.14.2 [INFO] [stderr] Compiling linux-raw-sys v0.4.11 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling aho-corasick v1.1.2 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling wide v0.7.13 [INFO] [stderr] Compiling anstream v0.6.4 [INFO] [stderr] Compiling either v1.9.0 [INFO] [stderr] Compiling clap_lex v0.6.0 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling syn v2.0.39 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling getrandom v0.2.11 [INFO] [stderr] Compiling indexmap v2.1.0 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling clap_builder v4.4.8 [INFO] [stderr] Compiling strum v0.25.0 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.6.7 [INFO] [stderr] Compiling termcolor v1.4.0 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling iana-time-zone v0.1.58 [INFO] [stderr] Compiling log v0.4.20 [INFO] [stderr] Compiling petgraph v0.6.4 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling is-terminal v0.4.9 [INFO] [stderr] Compiling num-complex v0.4.4 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling ordered-float v3.9.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling chrono v0.4.31 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling regex-automata v0.4.3 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling getset v0.1.2 [INFO] [stderr] Compiling regex v1.10.2 [INFO] [stderr] Compiling serde_derive v1.0.192 [INFO] [stderr] Compiling thiserror-impl v1.0.50 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling clap_derive v4.4.7 [INFO] [stderr] Compiling env_logger v0.10.1 [INFO] [stderr] Compiling enum-map v1.1.1 [INFO] [stderr] Compiling clap v4.4.8 [INFO] [stderr] Compiling bio-types v1.0.1 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Compiling csv v1.3.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling statrs v0.16.0 [INFO] [stderr] Compiling bio v1.4.0 [INFO] [stderr] Compiling cytos v1.2.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/cli/msa/concat.rs:25:28 [INFO] [stdout] | [INFO] [stdout] 25 | fn read_fasta_files(input: &Vec) -> CytosResult> { [INFO] [stdout] | ^^^^^^^^^^^^^ ^^^^^^^^ ^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | | [INFO] [stdout] | | the same lifetime is elided here [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 25 | fn read_fasta_files(input: &Vec) -> CytosResult>> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's named elsewhere is confusing [INFO] [stdout] --> src/model/fasta/fasta_file.rs:17:57 [INFO] [stdout] | [INFO] [stdout] 17 | pub fn load(path: &'a path::PathBuf) -> CytosResult { [INFO] [stdout] | -- the lifetime is named here ^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 17 | pub fn load(path: &'a path::PathBuf) -> CytosResult> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 56.89s [INFO] running `Command { std: "docker" "inspect" "66dcfeeb4364b4738717d4bd3d989672c29e7966d6137b40689ae145e82aa5ae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "66dcfeeb4364b4738717d4bd3d989672c29e7966d6137b40689ae145e82aa5ae", kill_on_drop: false }` [INFO] [stdout] 66dcfeeb4364b4738717d4bd3d989672c29e7966d6137b40689ae145e82aa5ae [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c47381be6321a7d8d2ac0f2e4858495acb74adcedd4badc7c2124e84e62ca430 [INFO] running `Command { std: "docker" "start" "-a" "c47381be6321a7d8d2ac0f2e4858495acb74adcedd4badc7c2124e84e62ca430", kill_on_drop: false }` [INFO] [stderr] Compiling cytos v1.2.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/cli/msa/concat.rs:25:28 [INFO] [stdout] | [INFO] [stdout] 25 | fn read_fasta_files(input: &Vec) -> CytosResult> { [INFO] [stdout] | ^^^^^^^^^^^^^ ^^^^^^^^ ^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | | [INFO] [stdout] | | the same lifetime is elided here [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 25 | fn read_fasta_files(input: &Vec) -> CytosResult>> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's named elsewhere is confusing [INFO] [stdout] --> src/model/fasta/fasta_file.rs:17:57 [INFO] [stdout] | [INFO] [stdout] 17 | pub fn load(path: &'a path::PathBuf) -> CytosResult { [INFO] [stdout] | -- the lifetime is named here ^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 17 | pub fn load(path: &'a path::PathBuf) -> CytosResult> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.81s [INFO] running `Command { std: "docker" "inspect" "c47381be6321a7d8d2ac0f2e4858495acb74adcedd4badc7c2124e84e62ca430", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c47381be6321a7d8d2ac0f2e4858495acb74adcedd4badc7c2124e84e62ca430", kill_on_drop: false }` [INFO] [stdout] c47381be6321a7d8d2ac0f2e4858495acb74adcedd4badc7c2124e84e62ca430