[INFO] cloning repository https://github.com/genhub-bio/gen
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/genhub-bio/gen" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenhub-bio%2Fgen", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenhub-bio%2Fgen'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] d3d1aea85978e21cf5e913e9ad9fab7405d2777c
[INFO] building genhub-bio/gen against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenhub-bio%2Fgen" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/genhub-bio/gen
[INFO] finished tweaking git repo https://github.com/genhub-bio/gen
[INFO] tweaked toml for git repo https://github.com/genhub-bio/gen written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/genhub-bio/gen on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/genhub-bio/gen already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/paddison/rust-sugiyama`
[INFO] [stderr]  Downloading crates ...
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 8d98a0f54f7c5793982b36bf5be5bc255a32fa4460620df5d6a8f0bb4eb7545d
[INFO] running `Command { std: "docker" "start" "-a" "8d98a0f54f7c5793982b36bf5be5bc255a32fa4460620df5d6a8f0bb4eb7545d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8d98a0f54f7c5793982b36bf5be5bc255a32fa4460620df5d6a8f0bb4eb7545d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8d98a0f54f7c5793982b36bf5be5bc255a32fa4460620df5d6a8f0bb4eb7545d", kill_on_drop: false }`
[INFO] [stdout] 8d98a0f54f7c5793982b36bf5be5bc255a32fa4460620df5d6a8f0bb4eb7545d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 81105dc0abc5fdd07e9727217898c2a7bac230e876bbfe62a56b152b9542d401
[INFO] running `Command { std: "docker" "start" "-a" "81105dc0abc5fdd07e9727217898c2a7bac230e876bbfe62a56b152b9542d401", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde_core v1.0.227
[INFO] [stderr]    Compiling serde v1.0.227
[INFO] [stderr]    Compiling mio v1.0.4
[INFO] [stderr]    Compiling futures-util v0.3.31
[INFO] [stderr]    Compiling zlib-rs v0.5.2
[INFO] [stderr]    Compiling serde_derive v1.0.227
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling bstr v1.12.0
[INFO] [stderr]    Compiling lexical-util v1.0.7
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling regex-syntax v0.8.6
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling capnp v0.21.5
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling rustversion v1.0.22
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling tokio v1.47.1
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling bitflags v2.9.4
[INFO] [stderr]    Compiling noodles-core v0.18.0
[INFO] [stderr]    Compiling lexical-write-integer v1.0.6
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling rustix v0.38.44
[INFO] [stderr]    Compiling lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling lexical-write-float v1.0.6
[INFO] [stderr]    Compiling signal-hook v0.3.18
[INFO] [stderr]    Compiling lexical-core v1.0.6
[INFO] [stderr]    Compiling instability v0.3.9
[INFO] [stderr]    Compiling hashlink v0.9.1
[INFO] [stderr]    Compiling hashbrown v0.15.5
[INFO] [stderr]    Compiling castaway v0.2.4
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling signal-hook-mio v0.2.4
[INFO] [stderr]    Compiling darling_core v0.21.3
[INFO] [stderr]    Compiling fallible-iterator v0.3.0
[INFO] [stderr]    Compiling indoc v2.0.6
[INFO] [stderr]    Compiling fallible-streaming-iterator v0.1.9
[INFO] [stderr]    Compiling unicode-truncate v1.1.0
[INFO] [stderr]    Compiling regex-automata v0.4.11
[INFO] [stderr]    Compiling proc-macro2-diagnostics v0.10.1
[INFO] [stderr]    Compiling lru v0.12.5
[INFO] [stderr]    Compiling uncased v0.9.10
[INFO] [stderr]    Compiling anstyle-query v1.1.4
[INFO] [stderr]    Compiling fixedbitset v0.4.2
[INFO] [stderr]    Compiling unicase v2.8.1
[INFO] [stderr]    Compiling anstream v0.6.20
[INFO] [stderr]    Compiling mime_guess v2.0.5
[INFO] [stderr] error: could not compile `serde_derive` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/ad85bc524b1ad696e42061ad8338d382dffbdbe5/bin/rustc --crate-name serde_derive --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/serde_derive-1.0.227/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "deserialize_in_place"))' -C metadata=ec0400dc319932b9 -C extra-filename=-ee4c4966efb6b7fe --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-a28683de7e2d991e.rlib --extern quote=/opt/rustwide/target/debug/deps/libquote-084ae52e87cd4d87.rlib --extern syn=/opt/rustwide/target/debug/deps/libsyn-d39b452e62eda284.rlib --extern proc_macro --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `clang-sys` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/ad85bc524b1ad696e42061ad8338d382dffbdbe5/bin/rustc --crate-name clang_sys --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/clang-sys-1.8.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="clang_3_5"' --cfg 'feature="clang_3_6"' --cfg 'feature="clang_3_7"' --cfg 'feature="clang_3_8"' --cfg 'feature="clang_3_9"' --cfg 'feature="clang_4_0"' --cfg 'feature="clang_5_0"' --cfg 'feature="clang_6_0"' --cfg 'feature="libloading"' --cfg 'feature="runtime"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clang_10_0", "clang_11_0", "clang_12_0", "clang_13_0", "clang_14_0", "clang_15_0", "clang_16_0", "clang_17_0", "clang_18_0", "clang_3_5", "clang_3_6", "clang_3_7", "clang_3_8", "clang_3_9", "clang_4_0", "clang_5_0", "clang_6_0", "clang_7_0", "clang_8_0", "clang_9_0", "libcpp", "libloading", "runtime", "static"))' -C metadata=693f4d6fc6822bf5 -C extra-filename=-ba983144b0b4d39d --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern glob=/opt/rustwide/target/debug/deps/libglob-2a70d14a7a68e908.rmeta --extern libc=/opt/rustwide/target/debug/deps/liblibc-003114e4bf3a7485.rmeta --extern libloading=/opt/rustwide/target/debug/deps/liblibloading-c0d8a669539dd02a.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "81105dc0abc5fdd07e9727217898c2a7bac230e876bbfe62a56b152b9542d401", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "81105dc0abc5fdd07e9727217898c2a7bac230e876bbfe62a56b152b9542d401", kill_on_drop: false }`
[INFO] [stdout] 81105dc0abc5fdd07e9727217898c2a7bac230e876bbfe62a56b152b9542d401