[INFO] cloning repository https://github.com/DLBPointon/FastaManipulator [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/DLBPointon/FastaManipulator" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDLBPointon%2FFastaManipulator", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDLBPointon%2FFastaManipulator'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 68c4a636a46a91b88eb171210a04d705ffcfc2d7 [INFO] building DLBPointon/FastaManipulator against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDLBPointon%2FFastaManipulator" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/DLBPointon/FastaManipulator [INFO] finished tweaking git repo https://github.com/DLBPointon/FastaManipulator [INFO] tweaked toml for git repo https://github.com/DLBPointon/FastaManipulator written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/DLBPointon/FastaManipulator on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/DLBPointon/FastaManipulator already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded stacker v0.1.15 [INFO] [stderr] Downloaded noodles-csi v0.37.0 [INFO] [stderr] Downloaded lexical-write-integer v0.8.5 [INFO] [stderr] Downloaded str-buf v3.0.3 [INFO] [stderr] Downloaded noodles-core v0.15.0 [INFO] [stderr] Downloaded noodles v0.78.0 [INFO] [stderr] Downloaded psm v0.1.21 [INFO] [stderr] Downloaded lexical-parse-integer v0.8.6 [INFO] [stderr] Downloaded gcore v1.4.2 [INFO] [stderr] Downloaded predicates-tree v1.0.11 [INFO] [stderr] Downloaded noodles-sam v0.62.0 [INFO] [stderr] Downloaded predicates v3.1.2 [INFO] [stderr] Downloaded predicates-core v1.0.8 [INFO] [stderr] Downloaded gstd-codegen v1.4.2 [INFO] [stderr] Downloaded const_format v0.2.32 [INFO] [stderr] Downloaded lexical-core v0.8.5 [INFO] [stderr] Downloaded lexical-parse-float v0.8.5 [INFO] [stderr] Downloaded lexical-write-float v0.8.5 [INFO] [stderr] Downloaded lexical-util v0.8.5 [INFO] [stderr] Downloaded assert_cmd v2.0.16 [INFO] [stderr] Downloaded const_format_proc_macros v0.2.32 [INFO] [stderr] Downloaded libc-print v0.1.23 [INFO] [stderr] Downloaded page_size v0.6.0 [INFO] [stderr] Downloaded galloc v1.4.2 [INFO] [stderr] Downloaded gear-stack-buffer v1.4.2 [INFO] [stderr] Downloaded gsys v1.4.2 [INFO] [stderr] Downloaded gear-ss58 v1.4.2 [INFO] [stderr] Downloaded gprimitives v1.4.2 [INFO] [stderr] Downloaded gstd v1.4.2 [INFO] [stderr] Downloaded byte-slice-cast v1.2.2 [INFO] [stderr] Downloaded impl-trait-for-tuples v0.2.2 [INFO] [stderr] Downloaded parity-scale-codec v3.6.12 [INFO] [stderr] Downloaded scale-info-derive v2.11.3 [INFO] [stderr] Downloaded scale-info v2.11.3 [INFO] [stderr] Downloaded io v0.0.2 [INFO] [stderr] Downloaded termtree v0.4.1 [INFO] [stderr] Downloaded compare v0.1.0 [INFO] [stderr] Downloaded gmeta v1.4.2 [INFO] [stderr] Downloaded gear-dlmalloc v0.2.0 [INFO] [stderr] Downloaded gear-core-errors v1.4.2 [INFO] [stderr] Downloaded parity-scale-codec-derive v3.6.12 [INFO] [stderr] Downloaded noodles-cram v0.66.0 [INFO] [stderr] Downloaded noodles-bgzf v0.32.0 [INFO] [stderr] Downloaded noodles-fasta v0.41.0 [INFO] [stderr] Downloaded noodles-bam v0.65.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2fbe506dee816b0a6f02005d92f483e83b0bdb4a3254b599be3e495c0d4ebc41 [INFO] running `Command { std: "docker" "start" "-a" "2fbe506dee816b0a6f02005d92f483e83b0bdb4a3254b599be3e495c0d4ebc41", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2fbe506dee816b0a6f02005d92f483e83b0bdb4a3254b599be3e495c0d4ebc41", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2fbe506dee816b0a6f02005d92f483e83b0bdb4a3254b599be3e495c0d4ebc41", kill_on_drop: false }` [INFO] [stdout] 2fbe506dee816b0a6f02005d92f483e83b0bdb4a3254b599be3e495c0d4ebc41 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ab5bc273c181a35680150eea8167bfa272e4f43eaebcb3b278724450c9e1b85e [INFO] running `Command { std: "docker" "start" "-a" "ab5bc273c181a35680150eea8167bfa272e4f43eaebcb3b278724450c9e1b85e", kill_on_drop: false }` [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling subtle v2.6.1 [INFO] [stderr] Compiling cc v1.1.6 [INFO] [stderr] Compiling byte-slice-cast v1.2.2 [INFO] [stderr] Compiling once_cell v1.19.0 [INFO] [stderr] Compiling crunchy v0.2.2 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Compiling lexical-util v0.8.5 [INFO] [stderr] Compiling rustc-hex v2.1.0 [INFO] [stderr] Compiling bs58 v0.5.1 [INFO] [stderr] Compiling hex v0.4.3 [INFO] [stderr] Compiling syn v2.0.72 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling miniz_oxide v0.7.4 [INFO] [stderr] Compiling crypto-common v0.1.6 [INFO] [stderr] Compiling crossbeam-channel v0.5.13 [INFO] [stderr] Compiling digest v0.10.7 [INFO] [stderr] Compiling fixed-hash v0.8.0 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling blake2 v0.10.6 [INFO] [stderr] Compiling gear-stack-buffer v1.4.2 [INFO] [stderr] Compiling bit-vec v0.7.0 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling uint v0.9.5 [INFO] [stderr] Compiling futures-sink v0.3.30 [INFO] [stderr] Compiling gear-dlmalloc v0.2.0 [INFO] [stderr] Compiling futures-core v0.3.30 [INFO] [stderr] Compiling libc-print v0.1.23 [INFO] [stderr] Compiling page_size v0.6.0 [INFO] [stderr] Compiling gear-ss58 v1.4.2 [INFO] [stderr] Compiling unicode-xid v0.2.4 [INFO] [stderr] Compiling str-buf v3.0.3 [INFO] [stderr] Compiling futures-util v0.3.30 [INFO] [stderr] Compiling futures-channel v0.3.30 [INFO] [stderr] Compiling lexical-parse-integer v0.8.6 [INFO] [stderr] Compiling lexical-write-integer v0.8.5 [INFO] [stderr] Compiling const_format_proc_macros v0.2.32 [INFO] [stderr] Compiling indexmap v2.2.6 [INFO] [stderr] Compiling flate2 v1.0.30 [INFO] [stderr] Compiling lexical-parse-float v0.8.5 [INFO] [stderr] Compiling lexical-write-float v0.8.5 [INFO] [stderr] Compiling predicates-core v1.0.8 [INFO] [stderr] Compiling futures-io v0.3.30 [INFO] [stderr] Compiling gsys v1.4.2 [INFO] [stderr] Compiling galloc v1.4.2 [INFO] [stderr] Compiling md-5 v0.10.6 [INFO] [stderr] Compiling difflib v0.4.0 [INFO] [stderr] Compiling assert_cmd v2.0.16 [INFO] [stderr] Compiling termtree v0.4.1 [INFO] [stderr] Compiling noodles-bgzf v0.32.0 [INFO] [stderr] Compiling clap_builder v4.5.9 [INFO] [stderr] Compiling tempfile v3.12.0 [INFO] [stderr] Compiling compare v0.1.0 [INFO] [stderr] Compiling predicates-tree v1.0.11 [INFO] [stderr] Compiling lexical-core v0.8.5 [INFO] [stderr] Compiling toml_edit v0.21.1 [INFO] [stderr] Compiling const_format v0.2.32 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling psm v0.1.21 [INFO] [stderr] Compiling stacker v0.1.15 [INFO] [stderr] Compiling predicates v3.1.2 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling futures v0.3.30 [INFO] [stderr] Compiling proc-macro-crate v3.1.0 [INFO] [stderr] Compiling clap v4.5.9 [INFO] [stderr] Compiling bstr v1.9.1 [INFO] [stderr] Compiling regex v1.10.5 [INFO] [stderr] Compiling derive_more v0.99.18 [INFO] [stderr] Compiling enum-iterator-derive v1.4.0 [INFO] [stderr] Compiling serde_derive v1.0.204 [INFO] [stderr] Compiling noodles-core v0.15.0 [INFO] [stderr] Compiling noodles-csi v0.37.0 [INFO] [stderr] Compiling noodles-fasta v0.41.0 [INFO] [stderr] Compiling enum-iterator v1.5.0 [INFO] [stderr] Compiling noodles-sam v0.62.0 [INFO] [stderr] Compiling parity-scale-codec-derive v3.6.12 [INFO] [stderr] Compiling impl-trait-for-tuples v0.2.2 [INFO] [stderr] Compiling scale-info-derive v2.11.3 [INFO] [stderr] Compiling serde v1.0.204 [INFO] [stderr] Compiling parity-scale-codec v3.6.12 [INFO] [stderr] Compiling noodles-bam v0.65.0 [INFO] [stderr] Compiling scale-info v2.11.3 [INFO] [stderr] Compiling impl-codec v0.6.0 [INFO] [stderr] Compiling primitive-types v0.12.2 [INFO] [stderr] Compiling gear-core-errors v1.4.2 [INFO] [stderr] Compiling noodles-cram v0.66.0 [INFO] [stderr] Compiling gmeta v1.4.2 [INFO] [stderr] Compiling gprimitives v1.4.2 [INFO] [stderr] Compiling csv v1.3.0 [INFO] [stderr] Compiling serde_yaml v0.9.34+deprecated [INFO] [stderr] Compiling gcore v1.4.2 [INFO] [stderr] Compiling gstd-codegen v1.4.2 [INFO] [stderr] Compiling noodles v0.78.0 [INFO] [stderr] Compiling gstd v1.4.2 [INFO] [stderr] Compiling io v0.0.2 [INFO] [stderr] Compiling fasta_manipulation v0.1.5 (/opt/rustwide/workdir) [INFO] [stdout] warning: eliding a lifetime that's named elsewhere is confusing [INFO] [stdout] --> src/yaml_validator.rs:107:85 [INFO] [stdout] | [INFO] [stdout] 107 | fn check_secondaries(&'a self, secondary_list: Vec<&'a Vec>) -> Vec<&String> { [INFO] [stdout] | -- -- ^^^^^^^ the same lifetime is elided here [INFO] [stdout] | | | [INFO] [stdout] | the lifetime is named here the lifetime is named here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 107 | fn check_secondaries(&'a self, secondary_list: Vec<&'a Vec>) -> Vec<&'a String> { [INFO] [stdout] | ++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused return value of `must_use` that must be used [INFO] [stdout] --> src/yaml_validator.rs:246:21 [INFO] [stdout] | [INFO] [stdout] 246 | format!("PASS: {}", csv_path); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 246 | let _ = format!("PASS: {}", csv_path); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 53.05s [INFO] running `Command { std: "docker" "inspect" "ab5bc273c181a35680150eea8167bfa272e4f43eaebcb3b278724450c9e1b85e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ab5bc273c181a35680150eea8167bfa272e4f43eaebcb3b278724450c9e1b85e", kill_on_drop: false }` [INFO] [stdout] ab5bc273c181a35680150eea8167bfa272e4f43eaebcb3b278724450c9e1b85e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 14babba8d0fbd4413bc26c9a1b184584d1574f5314613633bae99ac4c2eefd9f [INFO] running `Command { std: "docker" "start" "-a" "14babba8d0fbd4413bc26c9a1b184584d1574f5314613633bae99ac4c2eefd9f", kill_on_drop: false }` [INFO] [stderr] Compiling fasta_manipulation v0.1.5 (/opt/rustwide/workdir) [INFO] [stdout] warning: eliding a lifetime that's named elsewhere is confusing [INFO] [stdout] --> src/yaml_validator.rs:107:85 [INFO] [stdout] | [INFO] [stdout] 107 | fn check_secondaries(&'a self, secondary_list: Vec<&'a Vec>) -> Vec<&String> { [INFO] [stdout] | -- -- ^^^^^^^ the same lifetime is elided here [INFO] [stdout] | | | [INFO] [stdout] | the lifetime is named here the lifetime is named here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 107 | fn check_secondaries(&'a self, secondary_list: Vec<&'a Vec>) -> Vec<&'a String> { [INFO] [stdout] | ++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused return value of `must_use` that must be used [INFO] [stdout] --> src/yaml_validator.rs:246:21 [INFO] [stdout] | [INFO] [stdout] 246 | format!("PASS: {}", csv_path); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 246 | let _ = format!("PASS: {}", csv_path); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: eliding a lifetime that's named elsewhere is confusing [INFO] [stdout] --> src/yaml_validator.rs:107:85 [INFO] [stdout] | [INFO] [stdout] 107 | fn check_secondaries(&'a self, secondary_list: Vec<&'a Vec>) -> Vec<&String> { [INFO] [stdout] | -- -- ^^^^^^^ the same lifetime is elided here [INFO] [stdout] | | | [INFO] [stdout] | the lifetime is named here the lifetime is named here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 107 | fn check_secondaries(&'a self, secondary_list: Vec<&'a Vec>) -> Vec<&'a String> { [INFO] [stdout] | ++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused return value of `must_use` that must be used [INFO] [stdout] --> src/yaml_validator.rs:246:21 [INFO] [stdout] | [INFO] [stdout] 246 | format!("PASS: {}", csv_path); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 246 | let _ = format!("PASS: {}", csv_path); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 2.21s [INFO] running `Command { std: "docker" "inspect" "14babba8d0fbd4413bc26c9a1b184584d1574f5314613633bae99ac4c2eefd9f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "14babba8d0fbd4413bc26c9a1b184584d1574f5314613633bae99ac4c2eefd9f", kill_on_drop: false }` [INFO] [stdout] 14babba8d0fbd4413bc26c9a1b184584d1574f5314613633bae99ac4c2eefd9f