[INFO] cloning repository https://github.com/ComputationalPathogens/ferraph [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ComputationalPathogens/ferraph" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FComputationalPathogens%2Fferraph", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FComputationalPathogens%2Fferraph'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] af29089501c196591154408d0eecdc1f95aa924e [INFO] building ComputationalPathogens/ferraph against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FComputationalPathogens%2Fferraph" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/ComputationalPathogens/ferraph [INFO] finished tweaking git repo https://github.com/ComputationalPathogens/ferraph [INFO] tweaked toml for git repo https://github.com/ComputationalPathogens/ferraph written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/ComputationalPathogens/ferraph on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/ComputationalPathogens/ferraph already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 91 packages to latest compatible versions [INFO] [stderr] Adding aho-corasick v1.1.3 [INFO] [stderr] Adding anyhow v1.0.100 [INFO] [stderr] Adding approx v0.5.1 [INFO] [stderr] Adding autocfg v1.5.0 [INFO] [stderr] Adding bio v0.37.1 (available: v3.0.0) [INFO] [stderr] Adding bio-types v1.0.4 [INFO] [stderr] Adding bit-set v0.5.3 [INFO] [stderr] Adding bit-vec v0.6.3 [INFO] [stderr] Adding bv v0.11.1 [INFO] [stderr] Adding bytecount v0.6.9 [INFO] [stderr] Adding byteorder v1.5.0 [INFO] [stderr] Adding cfg-if v1.0.3 [INFO] [stderr] Adding csv v1.3.1 [INFO] [stderr] Adding csv-core v0.1.12 [INFO] [stderr] Adding custom_derive v0.1.7 [INFO] [stderr] Adding derive-new v0.6.0 [INFO] [stderr] Adding either v1.15.0 [INFO] [stderr] Adding enum-map v1.1.1 [INFO] [stderr] Adding enum-map-derive v0.6.0 [INFO] [stderr] Adding equivalent v1.0.2 [INFO] [stderr] Adding feature-probe v0.1.1 [INFO] [stderr] Adding fixedbitset v0.2.0 [INFO] [stderr] Adding fixedbitset v0.4.2 [INFO] [stderr] Adding fnv v1.0.7 [INFO] [stderr] Adding fxhash v0.2.1 [INFO] [stderr] Adding getrandom v0.2.16 [INFO] [stderr] Adding getset v0.1.6 [INFO] [stderr] Adding hashbrown v0.12.3 [INFO] [stderr] Adding hashbrown v0.16.0 [INFO] [stderr] Adding heck v0.3.3 [INFO] [stderr] Adding heck v0.5.0 [INFO] [stderr] Adding indexmap v1.9.3 [INFO] [stderr] Adding indexmap v2.11.4 [INFO] [stderr] Adding itertools v0.10.5 (available: v0.14.0) [INFO] [stderr] Adding itertools-num v0.1.3 [INFO] [stderr] Adding itoa v1.0.15 [INFO] [stderr] Adding lazy_static v1.5.0 [INFO] [stderr] Adding libc v0.2.176 [INFO] [stderr] Adding libm v0.2.15 [INFO] [stderr] Adding matrixmultiply v0.3.10 [INFO] [stderr] Adding memchr v2.7.6 [INFO] [stderr] Adding multimap v0.8.3 [INFO] [stderr] Adding nalgebra v0.27.1 [INFO] [stderr] Adding nalgebra-macros v0.1.0 [INFO] [stderr] Adding ndarray v0.15.6 [INFO] [stderr] Adding newtype_derive v0.1.6 [INFO] [stderr] Adding num-complex v0.4.6 [INFO] [stderr] Adding num-integer v0.1.46 [INFO] [stderr] Adding num-rational v0.4.2 [INFO] [stderr] Adding num-traits v0.2.19 [INFO] [stderr] Adding ordered-float v1.1.1 [INFO] [stderr] Adding paste v1.0.15 [INFO] [stderr] Adding petgraph v0.5.1 [INFO] [stderr] Adding petgraph v0.6.5 (available: v0.8.2) [INFO] [stderr] Adding ppv-lite86 v0.2.21 [INFO] [stderr] Adding proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Adding proc-macro-error2 v2.0.1 [INFO] [stderr] Adding proc-macro2 v1.0.101 [INFO] [stderr] Adding quote v1.0.40 [INFO] [stderr] Adding rand v0.8.5 [INFO] [stderr] Adding rand_chacha v0.3.1 [INFO] [stderr] Adding rand_core v0.6.4 [INFO] [stderr] Adding rand_distr v0.4.3 [INFO] [stderr] Adding rawpointer v0.2.1 [INFO] [stderr] Adding regex v1.11.3 [INFO] [stderr] Adding regex-automata v0.4.11 [INFO] [stderr] Adding regex-syntax v0.8.6 [INFO] [stderr] Adding rustc_version v0.1.7 [INFO] [stderr] Adding rustversion v1.0.22 [INFO] [stderr] Adding ryu v1.0.20 [INFO] [stderr] Adding semver v0.1.20 [INFO] [stderr] Adding serde v1.0.228 [INFO] [stderr] Adding serde_core v1.0.228 [INFO] [stderr] Adding serde_derive v1.0.228 [INFO] [stderr] Adding simba v0.5.1 [INFO] [stderr] Adding statrs v0.15.0 [INFO] [stderr] Adding strum v0.21.0 [INFO] [stderr] Adding strum_macros v0.21.1 [INFO] [stderr] Adding strum_macros v0.26.4 [INFO] [stderr] Adding syn v1.0.109 [INFO] [stderr] Adding syn v2.0.106 [INFO] [stderr] Adding thiserror v1.0.69 [INFO] [stderr] Adding thiserror-impl v1.0.69 [INFO] [stderr] Adding triple_accel v0.4.0 [INFO] [stderr] Adding typenum v1.18.0 [INFO] [stderr] Adding unicode-ident v1.0.19 [INFO] [stderr] Adding unicode-segmentation v1.12.0 [INFO] [stderr] Adding vec_map v0.8.2 [INFO] [stderr] Adding wasi v0.11.1+wasi-snapshot-preview1 [INFO] [stderr] Adding zerocopy v0.8.27 [INFO] [stderr] Adding zerocopy-derive v0.8.27 [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded strum_macros v0.21.1 [INFO] [stderr] Downloaded nalgebra-macros v0.1.0 [INFO] [stderr] Downloaded strum v0.21.0 [INFO] [stderr] Downloaded simba v0.5.1 [INFO] [stderr] Downloaded enum-map-derive v0.6.0 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded bit-set v0.5.3 [INFO] [stderr] Downloaded getset v0.1.6 [INFO] [stderr] Downloaded matrixmultiply v0.3.10 [INFO] [stderr] Downloaded statrs v0.15.0 [INFO] [stderr] Downloaded bio v0.37.1 [INFO] [stderr] Downloaded bytecount v0.6.9 [INFO] [stderr] Downloaded enum-map v1.1.1 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded fixedbitset v0.2.0 [INFO] [stderr] Downloaded nalgebra v0.27.1 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded petgraph v0.6.5 [INFO] [stderr] Downloaded petgraph v0.5.1 [INFO] [stderr] Downloaded ndarray v0.15.6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] dc79cc5d45e2f563344a6d26b84581472461bc171691d82ffa92e19f119e68cd [INFO] running `Command { std: "docker" "start" "-a" "dc79cc5d45e2f563344a6d26b84581472461bc171691d82ffa92e19f119e68cd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "dc79cc5d45e2f563344a6d26b84581472461bc171691d82ffa92e19f119e68cd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "dc79cc5d45e2f563344a6d26b84581472461bc171691d82ffa92e19f119e68cd", kill_on_drop: false }` [INFO] [stdout] dc79cc5d45e2f563344a6d26b84581472461bc171691d82ffa92e19f119e68cd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7e7011ce8f16d52278ccd88a714116fe78eb73988617af2353b601cdc1aa27f0 [INFO] running `Command { std: "docker" "start" "-a" "7e7011ce8f16d52278ccd88a714116fe78eb73988617af2353b601cdc1aa27f0", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.101 [INFO] [stderr] Compiling unicode-ident v1.0.19 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling libc v0.2.176 [INFO] [stderr] Compiling zerocopy v0.8.27 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling cfg-if v1.0.3 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rustversion v1.0.22 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Compiling regex-syntax v0.8.6 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling hashbrown v0.12.3 [INFO] [stderr] Compiling unicode-segmentation v1.12.0 [INFO] [stderr] Compiling anyhow v1.0.100 [INFO] [stderr] Compiling fixedbitset v0.2.0 [INFO] [stderr] Compiling hashbrown v0.16.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling bio v0.37.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Compiling indexmap v2.11.4 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling strum v0.21.0 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling regex-automata v0.4.11 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling simba v0.5.1 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Compiling regex v1.11.3 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling strum_macros v0.21.1 [INFO] [stderr] Compiling enum-map v1.1.1 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling nalgebra v0.27.1 [INFO] [stderr] Compiling statrs v0.15.0 [INFO] [stderr] Compiling ferraph v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused borrow that must be used [INFO] [stdout] --> src/main.rs:72:29 [INFO] [stdout] | [INFO] [stdout] 72 | / ... &graph.edges(lastkmer).for_each(|edge| { [INFO] [stdout] 73 | | ... if edge.target() == nodeid { [INFO] [stdout] 74 | | ... if edge.weight() == &edgetype { [INFO] [stdout] 75 | | ... edgeid = edge.id().clone(); [INFO] [stdout] ... | [INFO] [stdout] 81 | | ... }); [INFO] [stdout] | |________________________^ the borrow produces a value [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 72 | let _ = &graph.edges(lastkmer).for_each(|edge| { [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 55.25s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "7e7011ce8f16d52278ccd88a714116fe78eb73988617af2353b601cdc1aa27f0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7e7011ce8f16d52278ccd88a714116fe78eb73988617af2353b601cdc1aa27f0", kill_on_drop: false }` [INFO] [stdout] 7e7011ce8f16d52278ccd88a714116fe78eb73988617af2353b601cdc1aa27f0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3599f72be519c5daedb6ff248ee9202fd973cbf042c6a6a1ea34f6df536694ec [INFO] running `Command { std: "docker" "start" "-a" "3599f72be519c5daedb6ff248ee9202fd973cbf042c6a6a1ea34f6df536694ec", kill_on_drop: false }` [INFO] [stderr] Compiling ferraph v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused borrow that must be used [INFO] [stdout] --> src/main.rs:72:29 [INFO] [stdout] | [INFO] [stdout] 72 | / ... &graph.edges(lastkmer).for_each(|edge| { [INFO] [stdout] 73 | | ... if edge.target() == nodeid { [INFO] [stdout] 74 | | ... if edge.weight() == &edgetype { [INFO] [stdout] 75 | | ... edgeid = edge.id().clone(); [INFO] [stdout] ... | [INFO] [stdout] 81 | | ... }); [INFO] [stdout] | |________________________^ the borrow produces a value [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 72 | let _ = &graph.edges(lastkmer).for_each(|edge| { [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.70s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "3599f72be519c5daedb6ff248ee9202fd973cbf042c6a6a1ea34f6df536694ec", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3599f72be519c5daedb6ff248ee9202fd973cbf042c6a6a1ea34f6df536694ec", kill_on_drop: false }` [INFO] [stdout] 3599f72be519c5daedb6ff248ee9202fd973cbf042c6a6a1ea34f6df536694ec