[INFO] fetching crate rdkit-rs 0.1.0... [INFO] testing rdkit-rs-0.1.0 against try#c2e32f1c9652b13ed99608599c1e855462f421f3 for pr-146098-8 [INFO] extracting crate rdkit-rs 0.1.0 into /workspace/builds/worker-7-tc2/source [INFO] started tweaking crates.io crate rdkit-rs 0.1.0 [INFO] finished tweaking crates.io crate rdkit-rs 0.1.0 [INFO] tweaked toml for crates.io crate rdkit-rs 0.1.0 written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate rdkit-rs 0.1.0 on toolchain c2e32f1c9652b13ed99608599c1e855462f421f3 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Locking 33 packages to latest compatible versions [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bf3316c938a85f30fcb7a8f153a538ded6eeec7cf05b6ef6fd538101704e065c [INFO] running `Command { std: "docker" "start" "-a" "bf3316c938a85f30fcb7a8f153a538ded6eeec7cf05b6ef6fd538101704e065c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bf3316c938a85f30fcb7a8f153a538ded6eeec7cf05b6ef6fd538101704e065c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bf3316c938a85f30fcb7a8f153a538ded6eeec7cf05b6ef6fd538101704e065c", kill_on_drop: false }` [INFO] [stdout] bf3316c938a85f30fcb7a8f153a538ded6eeec7cf05b6ef6fd538101704e065c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ca165eab2edd1e1da7b0353bed879ab45bb05b0b973c20529b5b8fe989edf9a5 [INFO] running `Command { std: "docker" "start" "-a" "ca165eab2edd1e1da7b0353bed879ab45bb05b0b973c20529b5b8fe989edf9a5", kill_on_drop: false }` [INFO] [stderr] Compiling find-msvc-tools v0.1.4 [INFO] [stderr] Compiling proc-macro2 v1.0.103 [INFO] [stderr] Compiling hashbrown v0.16.0 [INFO] [stderr] Compiling cxxbridge-flags v1.0.188 [INFO] [stderr] Compiling foldhash v0.2.0 [INFO] [stderr] Compiling cc v1.2.45 [INFO] [stderr] Compiling indexmap v2.12.0 [INFO] [stderr] Compiling quote v1.0.42 [INFO] [stderr] Compiling syn v2.0.110 [INFO] [stderr] Compiling link-cplusplus v1.0.12 [INFO] [stderr] Compiling cxx v1.0.188 [INFO] [stderr] Compiling cxxbridge-macro v1.0.188 [INFO] [stderr] Compiling rdkit-ffi v0.1.0+rdkit-2022-09-1-pre [INFO] [stderr] Compiling rdkit-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 17.10s [INFO] running `Command { std: "docker" "inspect" "ca165eab2edd1e1da7b0353bed879ab45bb05b0b973c20529b5b8fe989edf9a5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ca165eab2edd1e1da7b0353bed879ab45bb05b0b973c20529b5b8fe989edf9a5", kill_on_drop: false }` [INFO] [stdout] ca165eab2edd1e1da7b0353bed879ab45bb05b0b973c20529b5b8fe989edf9a5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 819f0ff6efaee0175345a6dffdef3952561b0f168f124ebfd5c78e52a5b4f321 [INFO] running `Command { std: "docker" "start" "-a" "819f0ff6efaee0175345a6dffdef3952561b0f168f124ebfd5c78e52a5b4f321", kill_on_drop: false }` [INFO] [stderr] Compiling rdkit-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustchhK1ol/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libtest-*,libgetopts-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/debug/deps/{librdkit_ffi-7b7d89d32f805bf7,libcxx-589a469f2ea8d4cd,libfoldhash-40583849f0199317,liblink_cplusplus-d46843ee0abd1a79}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lstdc++" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustchhK1ol/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/cxx-665e4417908cca11/out" "-L" "/opt/rustwide/target/debug/build/link-cplusplus-69893da4f717fec9/out" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/rdkit_rs-00af1fd42424a2bd" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: rust-lld: error: undefined symbol: cxxbridge1$shared_ptr$RDKit$RWMol$drop [INFO] [stdout] >>> referenced by lib.rs:7 (src/lib.rs:7) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..RWMol$u20$as$u20$cxx..shared_ptr..SharedPtrTarget$GT$::__drop::hb6c50cf892d58bd1) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MCSResult$raw [INFO] [stdout] >>> referenced by lib.rs:27 (src/lib.rs:27) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MCSResult$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__raw::h37d802024bc63a03) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MCSResult$drop [INFO] [stdout] >>> referenced by lib.rs:27 (src/lib.rs:27) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MCSResult$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__drop::hd6345b705e549755) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$ROMolPtrVec$raw [INFO] [stdout] >>> referenced by lib.rs:15 (src/lib.rs:15) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..ROMolPtrVec$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__raw::h40a155ec02053447) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$ROMolPtrVec$drop [INFO] [stdout] >>> referenced by lib.rs:15 (src/lib.rs:15) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..ROMolPtrVec$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__drop::hf5b548c7b6fff275) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MorganFingerprint$raw [INFO] [stdout] >>> referenced by lib.rs:22 (src/lib.rs:22) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MorganFingerprint$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__raw::hb2303bf636c9056c) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MorganFingerprint$drop [INFO] [stdout] >>> referenced by lib.rs:22 (src/lib.rs:22) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MorganFingerprint$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__drop::hf1383a4ff4e910dd) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$FMCS_find_mcs [INFO] [stdout] >>> referenced by lib.rs:27 (src/lib.rs:27) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(rdkit_ffi::rd::FMCS_find_mcs::h8d67b3af7238b44b) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$ROMolPtrVec_new [INFO] [stdout] >>> referenced by lib.rs:15 (src/lib.rs:15) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(rdkit_ffi::rd::ROMolPtrVec_new::hcbcfedf97e9e30db) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MCSResult_num_atoms [INFO] [stdout] >>> referenced by lib.rs:28 (src/lib.rs:28) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_num_atoms::hddc50760834b1775) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MCSResult_num_bonds [INFO] [stdout] >>> referenced by lib.rs:29 (src/lib.rs:29) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_num_bonds::h0f752f1c1cf08409) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$RWMol_get_num_atoms [INFO] [stdout] >>> referenced by lib.rs:11 (src/lib.rs:11) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_atoms::h8f5416f239065b6a) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$RWMol_get_num_bonds [INFO] [stdout] >>> referenced by lib.rs:13 (src/lib.rs:13) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_bonds::h8da78187a8eaa29d) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$SmilesParse_smi_to_mol [INFO] [stdout] >>> referenced by lib.rs:7 (src/lib.rs:7) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(rdkit_ffi::rd::SmilesParse_smi_to_mol::haec3ca40a08b0015) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MCSResult_smarts_string [INFO] [stdout] >>> referenced by lib.rs:30 (src/lib.rs:30) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_smarts_string::h3b352e131afc47b5) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MorganFP_get_fingerprint [INFO] [stdout] >>> referenced by lib.rs:22 (src/lib.rs:22) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(rdkit_ffi::rd::MorganFP_get_fingerprint::hf3f0d3c0a5dbfba1) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$ROMolPtrVec_emplace_back [INFO] [stdout] >>> referenced by lib.rs:16 (src/lib.rs:16) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(rdkit_ffi::rd::ROMolPtrVec_emplace_back::h2db4d586321d30ed) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$RWMol_get_num_heavy_atoms [INFO] [stdout] >>> referenced by lib.rs:12 (src/lib.rs:12) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_heavy_atoms::h12587723b091fcae) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MorganFP_get_nonzero_elements_size [INFO] [stdout] >>> referenced by lib.rs:23 (src/lib.rs:23) [INFO] [stdout] >>> rdkit_ffi-7b7d89d32f805bf7.rdkit_ffi.b5dfc8e9b260709c-cgu.0.rcgu.o:(rdkit_ffi::rd::MorganFP_get_nonzero_elements_size::h4782d335655ae56f) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-7b7d89d32f805bf7.rlib [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `rdkit-rs` (lib test) due to 1 previous error [INFO] running `Command { std: "docker" "inspect" "819f0ff6efaee0175345a6dffdef3952561b0f168f124ebfd5c78e52a5b4f321", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "819f0ff6efaee0175345a6dffdef3952561b0f168f124ebfd5c78e52a5b4f321", kill_on_drop: false }` [INFO] [stdout] 819f0ff6efaee0175345a6dffdef3952561b0f168f124ebfd5c78e52a5b4f321