[INFO] fetching crate poasta 0.1.0... [INFO] testing poasta-0.1.0 against master#c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 for pr-146098-8 [INFO] extracting crate poasta 0.1.0 into /workspace/builds/worker-3-tc1/source [INFO] started tweaking crates.io crate poasta 0.1.0 [INFO] finished tweaking crates.io crate poasta 0.1.0 [INFO] tweaked toml for crates.io crate poasta 0.1.0 written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate poasta 0.1.0 on toolchain c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate poasta 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded noodles-fasta v0.54.0 [INFO] [stderr] Downloaded noodles-bgzf v0.41.0 [INFO] [stderr] Downloaded noodles v0.99.0 [INFO] [stderr] Downloaded num-bigint v0.4.5 [INFO] [stderr] Downloaded noodles-fastq v0.19.0 [INFO] [stderr] Downloaded noodles-core v0.17.0 [INFO] [stderr] Downloaded bstr v1.11.0 [INFO] [stderr] Downloaded petgraph v0.8.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3b965edd27a8d8b850144ae39265dbdf7a3e812b2dc4cef3f3260800458f26a0 [INFO] running `Command { std: "docker" "start" "-a" "3b965edd27a8d8b850144ae39265dbdf7a3e812b2dc4cef3f3260800458f26a0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3b965edd27a8d8b850144ae39265dbdf7a3e812b2dc4cef3f3260800458f26a0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3b965edd27a8d8b850144ae39265dbdf7a3e812b2dc4cef3f3260800458f26a0", kill_on_drop: false }` [INFO] [stdout] 3b965edd27a8d8b850144ae39265dbdf7a3e812b2dc4cef3f3260800458f26a0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 31311870e3ba142258cebc1d83ffe2dba961712b17b3412aaea1737f8e6867c8 [INFO] running `Command { std: "docker" "start" "-a" "31311870e3ba142258cebc1d83ffe2dba961712b17b3412aaea1737f8e6867c8", kill_on_drop: false }` [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling bstr v1.11.0 [INFO] [stderr] Compiling foldhash v0.1.5 [INFO] [stderr] Compiling flate2 v1.1.2 [INFO] [stderr] Compiling syn v2.0.66 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling hashbrown v0.15.4 [INFO] [stderr] Compiling noodles-core v0.17.0 [INFO] [stderr] Compiling noodles-fastq v0.19.0 [INFO] [stderr] Compiling indexmap v2.10.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.15 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-bigint v0.4.5 [INFO] [stderr] Compiling num-iter v0.1.45 [INFO] [stderr] Compiling noodles-bgzf v0.41.0 [INFO] [stderr] Compiling noodles-fasta v0.54.0 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling noodles v0.99.0 [INFO] [stderr] Compiling num v0.4.3 [INFO] [stderr] Compiling serde_derive v1.0.203 [INFO] [stderr] Compiling clap_derive v4.5.4 [INFO] [stderr] Compiling clap v4.5.4 [INFO] [stderr] Compiling serde v1.0.203 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling serde_json v1.0.117 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling smallvec v1.13.2 [INFO] [stderr] Compiling poasta v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 26.57s [INFO] running `Command { std: "docker" "inspect" "31311870e3ba142258cebc1d83ffe2dba961712b17b3412aaea1737f8e6867c8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "31311870e3ba142258cebc1d83ffe2dba961712b17b3412aaea1737f8e6867c8", kill_on_drop: false }` [INFO] [stdout] 31311870e3ba142258cebc1d83ffe2dba961712b17b3412aaea1737f8e6867c8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0b21a28119db15233685e0810d5f766f274a5295c7d6cfe3a790d01ee3fe3629 [INFO] running `Command { std: "docker" "start" "-a" "0b21a28119db15233685e0810d5f766f274a5295c7d6cfe3a790d01ee3fe3629", kill_on_drop: false }` [INFO] [stderr] Compiling poasta v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 3.35s [INFO] running `Command { std: "docker" "inspect" "0b21a28119db15233685e0810d5f766f274a5295c7d6cfe3a790d01ee3fe3629", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0b21a28119db15233685e0810d5f766f274a5295c7d6cfe3a790d01ee3fe3629", kill_on_drop: false }` [INFO] [stdout] 0b21a28119db15233685e0810d5f766f274a5295c7d6cfe3a790d01ee3fe3629 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 982291586c86fc8acbf45a123ff6754becf938877e5ae121a39d8d3b085c04ce [INFO] running `Command { std: "docker" "start" "-a" "982291586c86fc8acbf45a123ff6754becf938877e5ae121a39d8d3b085c04ce", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/poasta-1fefdfd00fd1986f) [INFO] [stdout] [INFO] [stdout] running 20 tests [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_bubble_graph_alignment ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_deletion_handling ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_gap_cost_calculation ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_state_transitions ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_two_piece_breakpoint ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_very_long_gaps ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_two_piece_behavior_simple ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_long_gap_preference ... ok [INFO] [stdout] test bubbles::finder::tests::test_superbubble_finder ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_mixed_operations ... ok [INFO] [stdout] test io::gfa::tests::test_invalid_header ... ok [INFO] [stdout] test io::gfa::tests::test_invalid_link ... ok [INFO] [stdout] test io::gfa::tests::test_invalid_segment ... ok [INFO] [stdout] test io::gfa::tests::test_parse_header ... ok [INFO] [stdout] test io::gfa::tests::test_parse_segment ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_simple_alignment_comparison ... ok [INFO] [stdout] test aligner::queue::tests::test_layered_queue ... ok [INFO] [stdout] test io::graph::tests::test_load_graph_from_gfa ... ok [INFO] [stdout] test io::gfa::tests::test_parse_link ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_invalid_parameters - should panic ... ok [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/lasagna.rs (/opt/rustwide/target/debug/deps/lasagna-83962382e2329b4d) [INFO] [stdout] test result: ok. 20 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s [INFO] [stderr] Running unittests src/bin/poasta.rs (/opt/rustwide/target/debug/deps/poasta-17da7b6fb1025324) [INFO] [stdout] [INFO] [stderr] Doc-tests poasta [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "982291586c86fc8acbf45a123ff6754becf938877e5ae121a39d8d3b085c04ce", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "982291586c86fc8acbf45a123ff6754becf938877e5ae121a39d8d3b085c04ce", kill_on_drop: false }` [INFO] [stdout] 982291586c86fc8acbf45a123ff6754becf938877e5ae121a39d8d3b085c04ce