[INFO] fetching crate mzdeisotope 0.3.4... [INFO] testing mzdeisotope-0.3.4 against master#c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 for pr-146098-8 [INFO] extracting crate mzdeisotope 0.3.4 into /workspace/builds/worker-5-tc1/source [INFO] started tweaking crates.io crate mzdeisotope 0.3.4 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate mzdeisotope 0.3.4 [INFO] tweaked toml for crates.io crate mzdeisotope 0.3.4 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate mzdeisotope 0.3.4 on toolchain c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate mzdeisotope 0.3.4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded test-log v0.2.17 [INFO] [stderr] Downloaded simba v0.9.0 [INFO] [stderr] Downloaded mzpeaks v1.0.9 [INFO] [stderr] Downloaded test-log-macros v0.2.17 [INFO] [stderr] Downloaded wide v0.7.32 [INFO] [stderr] Downloaded mzsignal v1.1.7 [INFO] [stderr] Downloaded identity-hash v0.1.0 [INFO] [stderr] Downloaded chemical_elements v0.7.0 [INFO] [stderr] Downloaded mzdata v0.60.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bbb0d7ec6d02d1348b2a26ae3bfd5182247cb88be78c11da4e15b44f1b51381c [INFO] running `Command { std: "docker" "start" "-a" "bbb0d7ec6d02d1348b2a26ae3bfd5182247cb88be78c11da4e15b44f1b51381c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bbb0d7ec6d02d1348b2a26ae3bfd5182247cb88be78c11da4e15b44f1b51381c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bbb0d7ec6d02d1348b2a26ae3bfd5182247cb88be78c11da4e15b44f1b51381c", kill_on_drop: false }` [INFO] [stdout] bbb0d7ec6d02d1348b2a26ae3bfd5182247cb88be78c11da4e15b44f1b51381c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 198b510d9defb67556e82394fdb3d57ef67b73c345a4e50cfcf35db3a790773c [INFO] running `Command { std: "docker" "start" "-a" "198b510d9defb67556e82394fdb3d57ef67b73c345a4e50cfcf35db3a790773c", kill_on_drop: false }` [INFO] [stderr] Compiling syn v2.0.101 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling bytemuck v1.23.0 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling hashbrown v0.15.3 [INFO] [stderr] Compiling miniz_oxide v0.8.8 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling outref v0.5.2 [INFO] [stderr] Compiling vsimd v0.8.0 [INFO] [stderr] Compiling tracing-core v0.1.33 [INFO] [stderr] Compiling bitflags v2.9.1 [INFO] [stderr] Compiling md5 v0.7.0 [INFO] [stderr] Compiling identity-hash v0.1.0 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling sha1 v0.10.6 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling flate2 v1.1.1 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling base64-simd v0.8.0 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling mzpeaks v1.0.9 [INFO] [stderr] Compiling chrono v0.4.41 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling simba v0.9.0 [INFO] [stderr] Compiling darling_core v0.20.11 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling tracing-attributes v0.1.28 [INFO] [stderr] Compiling darling_macro v0.20.11 [INFO] [stderr] Compiling tracing v0.1.41 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling darling v0.20.11 [INFO] [stderr] Compiling serde_with_macros v3.12.0 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling serde_with v3.12.0 [INFO] [stderr] Compiling quick-xml v0.30.0 [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling chemical_elements v0.7.0 [INFO] [stderr] Compiling mzsignal v1.1.7 [INFO] [stderr] Compiling mzdata v0.60.1 [INFO] [stderr] Compiling mzdeisotope v0.3.4 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 32.70s [INFO] running `Command { std: "docker" "inspect" "198b510d9defb67556e82394fdb3d57ef67b73c345a4e50cfcf35db3a790773c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "198b510d9defb67556e82394fdb3d57ef67b73c345a4e50cfcf35db3a790773c", kill_on_drop: false }` [INFO] [stdout] 198b510d9defb67556e82394fdb3d57ef67b73c345a4e50cfcf35db3a790773c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f727c57fc24e9978922c56af8c8a471b92e82daccc981be12c78ddea6a9f8b87 [INFO] running `Command { std: "docker" "start" "-a" "f727c57fc24e9978922c56af8c8a471b92e82daccc981be12c78ddea6a9f8b87", kill_on_drop: false }` [INFO] [stderr] Compiling tracing-core v0.1.33 [INFO] [stderr] Compiling anstream v0.6.18 [INFO] [stderr] Compiling env_filter v0.1.3 [INFO] [stderr] Compiling thread_local v1.1.8 [INFO] [stderr] Compiling mzsignal v1.1.7 [INFO] [stderr] Compiling test-log-macros v0.2.17 [INFO] [stderr] Compiling env_logger v0.11.8 [INFO] [stderr] Compiling tracing v0.1.41 [INFO] [stderr] Compiling tracing-log v0.2.0 [INFO] [stderr] Compiling tracing-subscriber v0.3.19 [INFO] [stderr] Compiling mzdata v0.60.1 [INFO] [stderr] Compiling test-log v0.2.17 [INFO] [stderr] Compiling mzdeisotope v0.3.4 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 18.56s [INFO] running `Command { std: "docker" "inspect" "f727c57fc24e9978922c56af8c8a471b92e82daccc981be12c78ddea6a9f8b87", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f727c57fc24e9978922c56af8c8a471b92e82daccc981be12c78ddea6a9f8b87", kill_on_drop: false }` [INFO] [stdout] f727c57fc24e9978922c56af8c8a471b92e82daccc981be12c78ddea6a9f8b87 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] c089b67fa1aec4013327d214f7a7e5cfacca935a6e8f355c588259b84e61d069 [INFO] running `Command { std: "docker" "start" "-a" "c089b67fa1aec4013327d214f7a7e5cfacca935a6e8f355c588259b84e61d069", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/mzdeisotope-e59dd7144a2f309b) [INFO] [stdout] [INFO] [stdout] running 23 tests [INFO] [stdout] test deconvoluter::test::test_file_graph_step ... FAILED [INFO] [stdout] test deconvoluter::test::test_file_step ... FAILED [INFO] [stdout] test deconvoluter::test::test_builder ... ok [INFO] [stdout] test charge::test::test_quick_charge ... FAILED [INFO] [stdout] test deconvoluter::test::test_full_process ... FAILED [INFO] [stdout] test deconvoluter::test::test_full_process_quick_charge ... FAILED [INFO] [stdout] test isotopic_model::test::test_cache_key ... ok [INFO] [stdout] test deconvoluter::test::test_fit_all ... ok [INFO] [stdout] test isotopic_model::test::test_conversion_for_frac_composition ... ok [INFO] [stdout] test isotopic_model::test::test_fc ... ok [INFO] [stdout] test deconvoluter::test::test_mut ... ok [INFO] [stdout] test isotopic_model::test::test_mz_truncation ... ok [INFO] [stdout] test isotopic_model::test::test_scale ... ok [INFO] [stdout] test isotopic_model::test::test_tid_cached ... ok [INFO] [stdout] test scorer::test::test_gtest ... ok [INFO] [stdout] test multi_model_deconvoluters::test::test_file_step ... FAILED [INFO] [stdout] test scorer::test::test_msdeconv ... ok [INFO] [stdout] test scorer::test::test_penalized_msdeconv ... ok [INFO] [stdout] test scorer::test::test_scaled_gtest ... ok [INFO] [stdout] test isotopic_model::test::test_tid ... ok [INFO] [stdout] test isotopic_model::test::test_isotopic_pattern_overflow ... ok [INFO] [stdout] test isotopic_model::test::test_cache ... ok [INFO] [stdout] test isotopic_model::test::test_mono_to_base ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- deconvoluter::test::test_file_graph_step stdout ---- [INFO] [stdout] Error: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] [INFO] [stdout] ---- deconvoluter::test::test_file_step stdout ---- [INFO] [stdout] Error: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] [INFO] [stdout] ---- charge::test::test_quick_charge stdout ---- [INFO] [stdout] Error: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] [INFO] [stdout] ---- deconvoluter::test::test_full_process stdout ---- [INFO] [stdout] Error: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] [INFO] [stdout] ---- deconvoluter::test::test_full_process_quick_charge stdout ---- [INFO] [stdout] Error: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] [INFO] [stdout] ---- multi_model_deconvoluters::test::test_file_step stdout ---- [INFO] [stdout] Error: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] charge::test::test_quick_charge [INFO] [stdout] deconvoluter::test::test_file_graph_step [INFO] [stdout] deconvoluter::test::test_file_step [INFO] [stdout] deconvoluter::test::test_full_process [INFO] [stdout] deconvoluter::test::test_full_process_quick_charge [INFO] [stdout] multi_model_deconvoluters::test::test_file_step [INFO] [stdout] [INFO] [stdout] test result: FAILED. 17 passed; 6 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.15s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--lib` [INFO] running `Command { std: "docker" "inspect" "c089b67fa1aec4013327d214f7a7e5cfacca935a6e8f355c588259b84e61d069", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c089b67fa1aec4013327d214f7a7e5cfacca935a6e8f355c588259b84e61d069", kill_on_drop: false }` [INFO] [stdout] c089b67fa1aec4013327d214f7a7e5cfacca935a6e8f355c588259b84e61d069