[INFO] fetching crate sfs-cli 0.1.0... [INFO] testing sfs-cli-0.1.0 against try#c2e32f1c9652b13ed99608599c1e855462f421f3 for pr-146098-7 [INFO] extracting crate sfs-cli 0.1.0 into /workspace/builds/worker-7-tc2/source [INFO] started tweaking crates.io crate sfs-cli 0.1.0 [INFO] finished tweaking crates.io crate sfs-cli 0.1.0 [INFO] tweaked toml for crates.io crate sfs-cli 0.1.0 written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate sfs-cli 0.1.0 on toolchain c2e32f1c9652b13ed99608599c1e855462f421f3 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate sfs-cli 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 872df07fac36dfe9805f2b34a9083a055da2ac0611bdae50a537b86d13539da5 [INFO] running `Command { std: "docker" "start" "-a" "872df07fac36dfe9805f2b34a9083a055da2ac0611bdae50a537b86d13539da5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "872df07fac36dfe9805f2b34a9083a055da2ac0611bdae50a537b86d13539da5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "872df07fac36dfe9805f2b34a9083a055da2ac0611bdae50a537b86d13539da5", kill_on_drop: false }` [INFO] [stdout] 872df07fac36dfe9805f2b34a9083a055da2ac0611bdae50a537b86d13539da5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 408ef7de87c7ede3b69db423cd8bcbcdae842179485b914bbd5ce9ec165c22da [INFO] running `Command { std: "docker" "start" "-a" "408ef7de87c7ede3b69db423cd8bcbcdae842179485b914bbd5ce9ec165c22da", kill_on_drop: false }` [INFO] [stderr] Compiling crossbeam-utils v0.8.16 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling bytes v1.4.0 [INFO] [stderr] Compiling proc-macro2 v1.0.66 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling hashbrown v0.14.0 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling miniz_oxide v0.7.1 [INFO] [stderr] Compiling noodles-core v0.12.0 [INFO] [stderr] Compiling unicode-ident v1.0.11 [INFO] [stderr] Compiling utf8parse v0.2.1 [INFO] [stderr] Compiling memchr v2.6.0 [INFO] [stderr] Compiling anstyle-parse v0.2.1 [INFO] [stderr] Compiling anstyle v1.0.2 [INFO] [stderr] Compiling colorchoice v1.0.0 [INFO] [stderr] Compiling anstyle-query v1.0.0 [INFO] [stderr] Compiling flate2 v1.0.27 [INFO] [stderr] Compiling percent-encoding v2.3.0 [INFO] [stderr] Compiling indexmap v2.0.0 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Compiling anstream v0.5.0 [INFO] [stderr] Compiling anyhow v1.0.75 [INFO] [stderr] Compiling crossbeam-channel v0.5.8 [INFO] [stderr] Compiling syn v2.0.29 [INFO] [stderr] Compiling clap_lex v0.5.1 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling once_cell v1.18.0 [INFO] [stderr] Compiling log v0.4.20 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling clap_builder v4.4.0 [INFO] [stderr] Compiling env_logger v0.10.0 [INFO] [stderr] Compiling noodles-bgzf v0.22.0 [INFO] [stderr] Compiling noodles-csi v0.22.0 [INFO] [stderr] Compiling noodles-tabix v0.26.0 [INFO] [stderr] Compiling noodles-vcf v0.35.0 [INFO] [stderr] Compiling clap_derive v4.4.0 [INFO] [stderr] Compiling noodles-bcf v0.32.0 [INFO] [stderr] Compiling clap v4.4.0 [INFO] [stderr] Compiling sfs-core v0.1.0 [INFO] [stderr] Compiling sfs-cli v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 33.78s [INFO] running `Command { std: "docker" "inspect" "408ef7de87c7ede3b69db423cd8bcbcdae842179485b914bbd5ce9ec165c22da", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "408ef7de87c7ede3b69db423cd8bcbcdae842179485b914bbd5ce9ec165c22da", kill_on_drop: false }` [INFO] [stdout] 408ef7de87c7ede3b69db423cd8bcbcdae842179485b914bbd5ce9ec165c22da [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 075b581a7cd46277a65a48cec03b5ffdc7e87ba7c931db6802e593b746ef6a83 [INFO] running `Command { std: "docker" "start" "-a" "075b581a7cd46277a65a48cec03b5ffdc7e87ba7c931db6802e593b746ef6a83", kill_on_drop: false }` [INFO] [stderr] Compiling crossbeam-utils v0.8.16 [INFO] [stderr] Compiling libc v0.2.147 [INFO] [stderr] Compiling memoffset v0.9.0 [INFO] [stderr] Compiling serde v1.0.188 [INFO] [stderr] Compiling crossbeam-epoch v0.9.15 [INFO] [stderr] Compiling serde_derive v1.0.188 [INFO] [stderr] Compiling rustix v0.38.9 [INFO] [stderr] Compiling bitflags v2.4.0 [INFO] [stderr] Compiling rayon-core v1.11.0 [INFO] [stderr] Compiling linux-raw-sys v0.4.5 [INFO] [stderr] Compiling fastrand v2.0.0 [INFO] [stderr] Compiling walkdir v2.3.3 [INFO] [stderr] Compiling snapbox-macros v0.3.5 [INFO] [stderr] Compiling content_inspector v0.2.4 [INFO] [stderr] Compiling similar v2.2.1 [INFO] [stderr] Compiling winnow v0.5.15 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.8 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling filetime v0.2.22 [INFO] [stderr] Compiling os_pipe v1.1.4 [INFO] [stderr] Compiling crossbeam-deque v0.8.3 [INFO] [stderr] Compiling wait-timeout v0.2.0 [INFO] [stderr] Compiling noodles-bgzf v0.22.0 [INFO] [stderr] Compiling dunce v1.0.4 [INFO] [stderr] Compiling either v1.9.0 [INFO] [stderr] Compiling shlex v1.1.0 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling noodles-csi v0.22.0 [INFO] [stderr] Compiling rayon v1.7.0 [INFO] [stderr] Compiling noodles-tabix v0.26.0 [INFO] [stderr] Compiling noodles-vcf v0.35.0 [INFO] [stderr] Compiling tempfile v3.8.0 [INFO] [stderr] Compiling snapbox v0.4.12 [INFO] [stderr] Compiling noodles-bcf v0.32.0 [INFO] [stderr] Compiling sfs-core v0.1.0 [INFO] [stderr] Compiling toml_datetime v0.6.3 [INFO] [stderr] Compiling serde_spanned v0.6.3 [INFO] [stderr] Compiling humantime-serde v1.1.1 [INFO] [stderr] Compiling toml_edit v0.19.14 [INFO] [stderr] Compiling sfs-cli v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling trycmd v0.14.17 [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 42.39s [INFO] running `Command { std: "docker" "inspect" "075b581a7cd46277a65a48cec03b5ffdc7e87ba7c931db6802e593b746ef6a83", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "075b581a7cd46277a65a48cec03b5ffdc7e87ba7c931db6802e593b746ef6a83", kill_on_drop: false }` [INFO] [stdout] 075b581a7cd46277a65a48cec03b5ffdc7e87ba7c931db6802e593b746ef6a83 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 1e22853c116eeb376373a7dfb7c282d6a82f8c31ef645add34595335c858e185 [INFO] running `Command { std: "docker" "start" "-a" "1e22853c116eeb376373a7dfb7c282d6a82f8c31ef645add34595335c858e185", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.15s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/sfs-582bfa32341546cf) [INFO] [stdout] [INFO] [stdout] running 7 tests [INFO] [stdout] test create::tests::test_project_strict_conflict ... ok [INFO] [stdout] test create::tests::test_samples_and_samples_file_conflict ... ok [INFO] [stdout] test create::tests::test_project ... ok [INFO] [stdout] test view::tests::test_marginalize_keep_and_remove_conflict ... ok [INFO] [stdout] test create::tests::test_project_args_conflict ... ok [INFO] [stdout] test create::tests::test_parse_samples ... ok [INFO] [stdout] test tests::test_no_subcommand ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/cli_tests.rs (/opt/rustwide/target/debug/deps/cli_tests-bf3251df1f58cc77) [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stderr] Testing tests/fold/fold.toml ... ok [INFO] [stderr] Testing tests/stat/f2_and_fst.toml ... ok [INFO] [stderr] Testing tests/create/simple_vcf_1d_subset.toml ... ok [INFO] [stderr] Testing tests/create/missing_2d_project_subset.toml ... ok [INFO] [stderr] Testing tests/create/simple_vcf_gz_2d_subset.toml ... ok [INFO] [stderr] Testing tests/fold/fold_from_npy_inf.toml ... ok [INFO] [stderr] Testing tests/view/convert_to_npy.toml ... ok [INFO] [stderr] Testing tests/create/empty.toml ... ok [INFO] [stdout] test fold ... ok [INFO] [stderr] Testing tests/stat/heterozygosity.toml ... ok [INFO] [stderr] Testing tests/view/marginalize_from_npy.toml ... ok [INFO] [stderr] Testing tests/create/unknown.toml ... ok [INFO] [stderr] Testing tests/create/missing_3d_subset.toml ... ok [INFO] [stderr] Testing tests/view/marginalize_keep_unordered.toml ... ok [INFO] [stderr] Testing tests/view/marginalize_project.toml ... ok [INFO] [stderr] Testing tests/view/marginalize_remove.toml ... ok [INFO] [stderr] Testing tests/stat/invalid_precision.toml ... ok [INFO] [stderr] Testing tests/stat/relatedness.toml ... ok [INFO] [stderr] Testing tests/create/simple_2d_subset.toml ... ok [INFO] [stderr] Testing tests/create/simple_2d_all.toml ... ok [INFO] [stderr] Testing tests/create/missing_1d_all.toml ... ok [INFO] [stderr] Testing tests/create/missing_1d_invalid_project.toml ... ok [INFO] [stderr] Testing tests/create/missing_1d_project_individuals.toml ... ok [INFO] [stderr] Testing tests/stat/precision.toml ... ok [INFO] [stderr] Testing tests/create/missing_1d_dimension_error_project.toml ... ok [INFO] [stdout] test view ... ok [INFO] [stderr] Testing tests/create/missing_1d_project.toml ... ok [INFO] [stderr] Testing tests/create/simple_1d_all.toml ... ok [INFO] [stderr] Testing tests/create/missing_1d_single.toml ... ok [INFO] [stdout] test stat ... ok [INFO] [stderr] Testing tests/create/large_4d_project_subset.toml ... ok [INFO] [stdout] test create ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.29s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "1e22853c116eeb376373a7dfb7c282d6a82f8c31ef645add34595335c858e185", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1e22853c116eeb376373a7dfb7c282d6a82f8c31ef645add34595335c858e185", kill_on_drop: false }` [INFO] [stdout] 1e22853c116eeb376373a7dfb7c282d6a82f8c31ef645add34595335c858e185