[INFO] fetching crate deepbiop-utils 0.1.16... [INFO] testing deepbiop-utils-0.1.16 against try#c2e32f1c9652b13ed99608599c1e855462f421f3 for pr-146098-7 [INFO] extracting crate deepbiop-utils 0.1.16 into /workspace/builds/worker-3-tc2/source [INFO] started tweaking crates.io crate deepbiop-utils 0.1.16 [INFO] finished tweaking crates.io crate deepbiop-utils 0.1.16 [INFO] tweaked toml for crates.io crate deepbiop-utils 0.1.16 written to /workspace/builds/worker-3-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate deepbiop-utils 0.1.16 on toolchain c2e32f1c9652b13ed99608599c1e855462f421f3 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate deepbiop-utils 0.1.16 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] eb2903711cb37d90b64adbc26b118697cd9eed5715a7e325fc1f5a562b0cbeb7 [INFO] running `Command { std: "docker" "start" "-a" "eb2903711cb37d90b64adbc26b118697cd9eed5715a7e325fc1f5a562b0cbeb7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "eb2903711cb37d90b64adbc26b118697cd9eed5715a7e325fc1f5a562b0cbeb7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "eb2903711cb37d90b64adbc26b118697cd9eed5715a7e325fc1f5a562b0cbeb7", kill_on_drop: false }` [INFO] [stdout] eb2903711cb37d90b64adbc26b118697cd9eed5715a7e325fc1f5a562b0cbeb7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0a1569474c9032b8958a59aeeff25677a1d6e6622ef4dac147962b72ee0e2b44 [INFO] running `Command { std: "docker" "start" "-a" "0a1569474c9032b8958a59aeeff25677a1d6e6622ef4dac147962b72ee0e2b44", kill_on_drop: false }` [INFO] [stderr] Compiling target-lexicon v0.13.3 [INFO] [stderr] Compiling zerocopy v0.8.27 [INFO] [stderr] Compiling lexical-util v1.0.7 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling arrow-schema v57.0.0 [INFO] [stderr] Compiling siphasher v1.0.1 [INFO] [stderr] Compiling regex-syntax v0.8.8 [INFO] [stderr] Compiling quote v1.0.41 [INFO] [stderr] Compiling cc v1.2.44 [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling chrono v0.4.42 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling zlib-rs v0.5.2 [INFO] [stderr] Compiling syn v2.0.108 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling phf_shared v0.11.3 [INFO] [stderr] Compiling malachite-nz v0.4.22 [INFO] [stderr] Compiling lexical-parse-integer v1.0.6 [INFO] [stderr] Compiling num-bigint v0.4.6 [INFO] [stderr] Compiling lexical-write-integer v1.0.6 [INFO] [stderr] Compiling bitflags v2.10.0 [INFO] [stderr] Compiling lexical-parse-float v1.0.6 [INFO] [stderr] Compiling getopts v0.2.24 [INFO] [stderr] Compiling tiny-keccak v2.0.2 [INFO] [stderr] Compiling pyo3-build-config v0.27.1 [INFO] [stderr] Compiling lexical-write-float v1.0.6 [INFO] [stderr] Compiling unic-common v0.9.0 [INFO] [stderr] Compiling unic-char-range v0.9.0 [INFO] [stderr] Compiling unic-char-property v0.9.0 [INFO] [stderr] Compiling unic-ucd-version v0.9.0 [INFO] [stderr] Compiling lexical-core v1.0.6 [INFO] [stderr] Compiling flatbuffers v25.9.23 [INFO] [stderr] Compiling atoi v2.0.0 [INFO] [stderr] Compiling rustpython-parser-vendored v0.4.0 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling phf v0.11.3 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Compiling alloc-no-stdlib v2.0.4 [INFO] [stderr] Compiling alloc-stdlib v0.2.2 [INFO] [stderr] Compiling unic-ucd-ident v0.9.0 [INFO] [stderr] Compiling unic-emoji-char v0.9.0 [INFO] [stderr] Compiling csv-core v0.1.13 [INFO] [stderr] Compiling indoc v2.0.7 [INFO] [stderr] Compiling simdutf8 v0.1.5 [INFO] [stderr] Compiling lalrpop-util v0.20.2 [INFO] [stderr] Compiling zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling unindent v0.2.4 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling csv v1.4.0 [INFO] [stderr] Compiling toml_parser v1.0.4 [INFO] [stderr] Compiling brotli-decompressor v5.0.0 [INFO] [stderr] Compiling serde_json v1.0.145 [INFO] [stderr] Compiling pyo3-macros-backend v0.27.1 [INFO] [stderr] Compiling pyo3-ffi v0.27.1 [INFO] [stderr] Compiling pyo3 v0.27.1 [INFO] [stderr] Compiling numpy v0.27.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling serde_spanned v1.0.3 [INFO] [stderr] Compiling toml_datetime v0.7.3 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling ordered-float v2.10.1 [INFO] [stderr] Compiling twox-hash v2.1.2 [INFO] [stderr] Compiling rustc-hash v2.1.1 [INFO] [stderr] Compiling toml_writer v1.0.4 [INFO] [stderr] Compiling rustix v1.1.2 [INFO] [stderr] Compiling lz4_flex v0.11.5 [INFO] [stderr] Compiling brotli v8.0.2 [INFO] [stderr] Compiling toml v0.9.8 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling regex-automata v0.4.13 [INFO] [stderr] Compiling malachite-base v0.4.22 [INFO] [stderr] Compiling thrift v0.17.0 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling ordered-float v5.1.0 [INFO] [stderr] Compiling buffer-redux v1.0.2 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling seq-macro v0.3.6 [INFO] [stderr] Compiling textwrap v0.16.2 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling lexical v7.0.5 [INFO] [stderr] Compiling colored v3.0.0 [INFO] [stderr] Compiling phf_generator v0.11.3 [INFO] [stderr] Compiling phf_codegen v0.11.3 [INFO] [stderr] Compiling unicode_names2_generator v1.3.0 [INFO] [stderr] Compiling rustpython-parser v0.4.0 [INFO] [stderr] Compiling tempfile v3.23.0 [INFO] [stderr] Compiling unicode_names2 v1.3.0 [INFO] [stderr] Compiling darling_core v0.20.11 [INFO] [stderr] Compiling libz-rs-sys v0.5.2 [INFO] [stderr] Compiling flate2 v1.1.5 [INFO] [stderr] Compiling noodles-bgzf v0.43.0 [INFO] [stderr] Compiling needletail v0.5.1 [INFO] [stderr] Compiling zerocopy-derive v0.8.27 [INFO] [stderr] Compiling derive_more-impl v1.0.0 [INFO] [stderr] Compiling is-macro v0.3.7 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling rustpython-parser-core v0.4.0 [INFO] [stderr] Compiling bstr v1.12.1 [INFO] [stderr] Compiling regex v1.12.2 [INFO] [stderr] Compiling noodles-core v0.18.0 [INFO] [stderr] Compiling darling_macro v0.20.11 [INFO] [stderr] Compiling noodles-fastq v0.21.0 [INFO] [stderr] Compiling noodles-csi v0.51.0 [INFO] [stderr] Compiling noodles-fasta v0.56.0 [INFO] [stderr] Compiling darling v0.20.11 [INFO] [stderr] Compiling derive_builder_core v0.20.2 [INFO] [stderr] Compiling derive_more v1.0.0 [INFO] [stderr] Compiling noodles-sam v0.79.0 [INFO] [stderr] Compiling derive_builder_macro v0.20.2 [INFO] [stderr] Compiling derive_builder v0.20.2 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling zstd v0.13.3 [INFO] [stderr] Compiling pyo3-macros v0.27.1 [INFO] [stderr] Compiling noodles-bam v0.83.0 [INFO] [stderr] Compiling half v2.7.1 [INFO] [stderr] Compiling noodles v0.101.0 [INFO] [stderr] Compiling arrow-buffer v57.0.0 [INFO] [stderr] Compiling arrow-data v57.0.0 [INFO] [stderr] Compiling arrow-array v57.0.0 [INFO] [stderr] Compiling arrow-select v57.0.0 [INFO] [stderr] Compiling arrow-arith v57.0.0 [INFO] [stderr] Compiling arrow-row v57.0.0 [INFO] [stderr] Compiling malachite-q v0.4.22 [INFO] [stderr] Compiling arrow-cast v57.0.0 [INFO] [stderr] Compiling arrow-ipc v57.0.0 [INFO] [stderr] Compiling arrow-string v57.0.0 [INFO] [stderr] Compiling arrow-ord v57.0.0 [INFO] [stderr] Compiling malachite v0.4.22 [INFO] [stderr] Compiling malachite-bigint v0.2.3 [INFO] [stderr] Compiling rustpython-ast v0.4.0 [INFO] [stderr] Compiling arrow-json v57.0.0 [INFO] [stderr] Compiling arrow-csv v57.0.0 [INFO] [stderr] Compiling parquet v57.0.0 [INFO] [stderr] Compiling arrow v57.0.0 [INFO] [stderr] Compiling pyo3-stub-gen-derive v0.17.0 [INFO] [stderr] Compiling pyo3-stub-gen v0.17.0 [INFO] [stderr] Compiling deepbiop-utils v0.1.16 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 02s [INFO] running `Command { std: "docker" "inspect" "0a1569474c9032b8958a59aeeff25677a1d6e6622ef4dac147962b72ee0e2b44", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0a1569474c9032b8958a59aeeff25677a1d6e6622ef4dac147962b72ee0e2b44", kill_on_drop: false }` [INFO] [stdout] 0a1569474c9032b8958a59aeeff25677a1d6e6622ef4dac147962b72ee0e2b44 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 381e72a41da0c737adee41a8a07f7b85c61c51435e36689281fbb6245281e25d [INFO] running `Command { std: "docker" "start" "-a" "381e72a41da0c737adee41a8a07f7b85c61c51435e36689281fbb6245281e25d", kill_on_drop: false }` [INFO] [stderr] Compiling deepbiop-utils v0.1.16 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 4.05s [INFO] running `Command { std: "docker" "inspect" "381e72a41da0c737adee41a8a07f7b85c61c51435e36689281fbb6245281e25d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "381e72a41da0c737adee41a8a07f7b85c61c51435e36689281fbb6245281e25d", kill_on_drop: false }` [INFO] [stdout] 381e72a41da0c737adee41a8a07f7b85c61c51435e36689281fbb6245281e25d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] c46602b8c83c16069decdbbcec635077ebbc9f0827690312762aef066a272bc8 [INFO] running `Command { std: "docker" "start" "-a" "c46602b8c83c16069decdbbcec635077ebbc9f0827690312762aef066a272bc8", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.27s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/deepbiop_utils-ea4512fb5e4ad92f) [INFO] [stdout] [INFO] [stdout] running 18 tests [INFO] [stdout] test blat::tests::test_parse_psl ... ok [INFO] [stdout] test interval::genomics::tests::test_segment ... ok [INFO] [stdout] test interval::op::tests::test_generate_unmaped_intervals ... ok [INFO] [stdout] test interval::traits::tests::test_overlap_for_range ... ok [INFO] [stdout] test io::tests::test_real_example ... ok [INFO] [stdout] test io::tests::test_sequence_file_type ... ok [INFO] [stdout] test sv::tests::test_structural_variant_builder ... ok [INFO] [stdout] test sv::tests::test_structural_variant_from_str ... ok [INFO] [stdout] test sv::tests::test_structural_variant_from_str_invalid_format ... ok [INFO] [stdout] test strategy::tests::test_majority_voting_empty_labels ... ok [INFO] [stdout] test interval::op::tests::test_remove_intervals_and_keep_left ... ok [INFO] [stdout] test strategy::tests::test_majority_voting_small_window ... ok [INFO] [stdout] test strategy::tests::test_majority_voting2 ... ok [INFO] [stdout] test sv::tests::test_structural_variant_type_from_str ... ok [INFO] [stdout] test io::tests::test_is_compressed ... ok [INFO] [stdout] test io::tests::test_check_file_type ... ok [INFO] [stdout] test tests::test_highlight ... ok [INFO] [stdout] test strategy::tests::test_majority_voting ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 18 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] [stderr] Doc-tests deepbiop_utils [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test src/io.rs - io::is_compressed (line 139) - compile ... ok [INFO] [stdout] test src/io.rs - io::check_sequence_file_type (line 198) - compile ... ok [INFO] [stdout] test src/io.rs - io::check_compressed_type (line 68) - compile ... ok [INFO] [stdout] test src/interval/genomics.rs - interval::genomics::GenomicInterval::from_str (line 31) ... ok [INFO] [stdout] test src/sv.rs - sv::StructuralVariant::from_str (line 77) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 3.16s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "c46602b8c83c16069decdbbcec635077ebbc9f0827690312762aef066a272bc8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c46602b8c83c16069decdbbcec635077ebbc9f0827690312762aef066a272bc8", kill_on_drop: false }` [INFO] [stdout] c46602b8c83c16069decdbbcec635077ebbc9f0827690312762aef066a272bc8