[INFO] fetching crate checkm 0.3.0... [INFO] testing checkm-0.3.0 against try#c2e32f1c9652b13ed99608599c1e855462f421f3 for pr-146098-7 [INFO] extracting crate checkm 0.3.0 into /workspace/builds/worker-4-tc2/source [INFO] started tweaking crates.io crate checkm 0.3.0 [INFO] finished tweaking crates.io crate checkm 0.3.0 [INFO] tweaked toml for crates.io crate checkm 0.3.0 written to /workspace/builds/worker-4-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate checkm 0.3.0 on toolchain c2e32f1c9652b13ed99608599c1e855462f421f3 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 26 packages to latest compatible versions [INFO] [stderr] Adding env_logger v0.10.2 (available: v0.11.8) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 144241d88704ef902c9b56a6ad617cd4014867ccf33485f83ca43f0f16121495 [INFO] running `Command { std: "docker" "start" "-a" "144241d88704ef902c9b56a6ad617cd4014867ccf33485f83ca43f0f16121495", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "144241d88704ef902c9b56a6ad617cd4014867ccf33485f83ca43f0f16121495", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "144241d88704ef902c9b56a6ad617cd4014867ccf33485f83ca43f0f16121495", kill_on_drop: false }` [INFO] [stdout] 144241d88704ef902c9b56a6ad617cd4014867ccf33485f83ca43f0f16121495 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d8ecd65e39aaf5da3d987dd56c54a2318d2991ca45f5ca11ca8df358fe808092 [INFO] running `Command { std: "docker" "start" "-a" "d8ecd65e39aaf5da3d987dd56c54a2318d2991ca45f5ca11ca8df358fe808092", kill_on_drop: false }` [INFO] [stderr] Compiling csv-core v0.1.13 [INFO] [stderr] Compiling env_logger v0.10.2 [INFO] [stderr] Compiling csv v1.4.0 [INFO] [stderr] Compiling checkm v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1.91s [INFO] running `Command { std: "docker" "inspect" "d8ecd65e39aaf5da3d987dd56c54a2318d2991ca45f5ca11ca8df358fe808092", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d8ecd65e39aaf5da3d987dd56c54a2318d2991ca45f5ca11ca8df358fe808092", kill_on_drop: false }` [INFO] [stdout] d8ecd65e39aaf5da3d987dd56c54a2318d2991ca45f5ca11ca8df358fe808092 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 90ba4dcfaea0983e0a2ac02a00e66050dc23535ff3efe43430a489820c0b7785 [INFO] running `Command { std: "docker" "start" "-a" "90ba4dcfaea0983e0a2ac02a00e66050dc23535ff3efe43430a489820c0b7785", kill_on_drop: false }` [INFO] [stderr] Compiling cargo-husky v1.5.0 [INFO] [stderr] Compiling checkm v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.62s [INFO] running `Command { std: "docker" "inspect" "90ba4dcfaea0983e0a2ac02a00e66050dc23535ff3efe43430a489820c0b7785", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "90ba4dcfaea0983e0a2ac02a00e66050dc23535ff3efe43430a489820c0b7785", kill_on_drop: false }` [INFO] [stdout] 90ba4dcfaea0983e0a2ac02a00e66050dc23535ff3efe43430a489820c0b7785 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 6a645d0222fbf02385580221387990f9004afd2c436a78919932dabd2b7264c0 [INFO] running `Command { std: "docker" "start" "-a" "6a645d0222fbf02385580221387990f9004afd2c436a78919932dabd2b7264c0", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.08s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/checkm-6c68693a95904faf) [INFO] [stdout] [INFO] [stdout] running 13 tests [INFO] [stdout] test test::test_absolute_path_retrieval ... ok [INFO] [stdout] test test::test_checkm2_14column_format ... ok [INFO] [stdout] test test::test_checkm2_13column_format ... ok [INFO] [stdout] test test::test_checkm2_good_quality_genome_names ... ok [INFO] [stdout] test test::test_fasta_ordering_4times ... ok [INFO] [stdout] test test::test_retrieve_checkm2 ... ok [INFO] [stdout] test test::test_ordering_4times ... ok [INFO] [stdout] test test::test_retrieve_gzip ... ok [INFO] [stdout] test test::test_retrieve_checkm2_gzip ... ok [INFO] [stdout] test test::test_ordering_5times ... ok [INFO] [stdout] test test::test_retrieve ... ok [INFO] [stdout] test test::test_good_quality_genome_names ... ok [INFO] [stdout] test test::test_fasta_ordering_4times_min_completeness ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 13 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests checkm [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "6a645d0222fbf02385580221387990f9004afd2c436a78919932dabd2b7264c0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6a645d0222fbf02385580221387990f9004afd2c436a78919932dabd2b7264c0", kill_on_drop: false }` [INFO] [stdout] 6a645d0222fbf02385580221387990f9004afd2c436a78919932dabd2b7264c0