[INFO] fetching crate bio_files 0.3.4... [INFO] testing bio_files-0.3.4 against try#c2e32f1c9652b13ed99608599c1e855462f421f3 for pr-146098-7 [INFO] extracting crate bio_files 0.3.4 into /workspace/builds/worker-5-tc2/source [INFO] started tweaking crates.io crate bio_files 0.3.4 [INFO] finished tweaking crates.io crate bio_files 0.3.4 [INFO] tweaked toml for crates.io crate bio_files 0.3.4 written to /workspace/builds/worker-5-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate bio_files 0.3.4 on toolchain c2e32f1c9652b13ed99608599c1e855462f421f3 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate bio_files 0.3.4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 867326dac895821bbcc4adc11e0e4725459d8dcbd0c5fc2d83a769217884d342 [INFO] running `Command { std: "docker" "start" "-a" "867326dac895821bbcc4adc11e0e4725459d8dcbd0c5fc2d83a769217884d342", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "867326dac895821bbcc4adc11e0e4725459d8dcbd0c5fc2d83a769217884d342", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "867326dac895821bbcc4adc11e0e4725459d8dcbd0c5fc2d83a769217884d342", kill_on_drop: false }` [INFO] [stdout] 867326dac895821bbcc4adc11e0e4725459d8dcbd0c5fc2d83a769217884d342 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 98fc31016ac4e6612af18731b1dbd45d425bc897d3e31fc83da44abd7824a6c9 [INFO] running `Command { std: "docker" "start" "-a" "98fc31016ac4e6612af18731b1dbd45d425bc897d3e31fc83da44abd7824a6c9", kill_on_drop: false }` [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling cc v1.2.29 [INFO] [stderr] Compiling rustls-pki-types v1.12.0 [INFO] [stderr] Compiling indexmap v2.10.0 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling bytemuck v1.23.1 [INFO] [stderr] Compiling winnow v0.7.11 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling httparse v1.10.1 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling rustls v0.23.28 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling http v1.3.1 [INFO] [stderr] Compiling rand_core v0.9.3 [INFO] [stderr] Compiling ring v0.17.14 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling ordered-float v2.10.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling toml_edit v0.22.27 [INFO] [stderr] Compiling form_urlencoded v1.2.2 [INFO] [stderr] Compiling crc32fast v1.4.2 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Compiling once_cell v1.21.3 [INFO] [stderr] Compiling ureq-proto v0.5.2 [INFO] [stderr] Compiling simba v0.9.0 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling flate2 v1.1.2 [INFO] [stderr] Compiling chrono v0.4.41 [INFO] [stderr] Compiling crossbeam-deque v0.8.6 [INFO] [stderr] Compiling rand_chacha v0.9.0 [INFO] [stderr] Compiling regex v1.11.2 [INFO] [stderr] Compiling rustls-pemfile v2.2.0 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.0 [INFO] [stderr] Compiling zerovec-derive v0.11.1 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling proc-macro-crate v3.3.0 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling yoke v0.8.0 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling zerotrie v0.2.2 [INFO] [stderr] Compiling zerovec v0.11.2 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling num_enum_derive v0.7.4 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling num_enum v0.7.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling tinystr v0.8.1 [INFO] [stderr] Compiling potential_utf v0.1.2 [INFO] [stderr] Compiling icu_collections v2.0.0 [INFO] [stderr] Compiling icu_locale_core v2.0.0 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling rustls-webpki v0.103.3 [INFO] [stderr] Compiling webpki-roots v1.0.1 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling icu_provider v2.0.0 [INFO] [stderr] Compiling icu_properties v2.0.1 [INFO] [stderr] Compiling icu_normalizer v2.0.0 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling na_seq v0.3.6 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling rand v0.9.1 [INFO] [stderr] Compiling idna_adapter v1.2.1 [INFO] [stderr] Compiling idna v1.1.0 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v5.0.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling lin_alg v1.3.6 [INFO] [stderr] Compiling url v2.5.7 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling serde-value v0.7.0 [INFO] [stderr] Compiling serde-aux v4.7.0 [INFO] [stderr] Compiling webbrowser v1.0.5 [INFO] [stderr] Compiling ureq v3.1.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling multimap v0.10.1 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bio_apis v0.1.12 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling bio v2.3.0 [INFO] [stderr] Compiling bio_files v0.3.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `f64::consts::TAU` [INFO] [stdout] --> src/bond_inference.rs:10:33 [INFO] [stdout] | [INFO] [stdout] 10 | use std::{collections::HashMap, f64::consts::TAU}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `ss_load` [INFO] [stdout] --> src/mmcif.rs:277:13 [INFO] [stdout] | [INFO] [stdout] 277 | let ss_load = Instant::now(); [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ss_load` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `temperature_factor` [INFO] [stdout] --> src/pdbqt.rs:174:21 [INFO] [stdout] | [INFO] [stdout] 174 | let temperature_factor = parse_optional_f32(line[60..66].trim())?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_temperature_factor` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> src/pdbqt.rs:283:14 [INFO] [stdout] | [INFO] [stdout] 283 | for (i, atom) in self.atoms.iter().enumerate() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pubchem_cid` is assigned to, but never used [INFO] [stdout] --> src/sdf.rs:167:13 [INFO] [stdout] | [INFO] [stdout] 167 | let mut pubchem_cid = None; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_pubchem_cid` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `pubchem_cid` is never read [INFO] [stdout] --> src/sdf.rs:193:13 [INFO] [stdout] | [INFO] [stdout] 193 | pubchem_cid = Some(v); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `pubchem_cid` is never read [INFO] [stdout] --> src/sdf.rs:176:21 [INFO] [stdout] | [INFO] [stdout] 176 | pubchem_cid = Some(v); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_f32` is never used [INFO] [stdout] --> src/pdbqt.rs:37:4 [INFO] [stdout] | [INFO] [stdout] 37 | fn parse_f32(s: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `TorsionStatus` is never used [INFO] [stdout] --> src/pdbqt.rs:54:6 [INFO] [stdout] | [INFO] [stdout] 54 | enum TorsionStatus { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `LoopKind` is never used [INFO] [stdout] --> src/mmcif_aux.rs:13:6 [INFO] [stdout] | [INFO] [stdout] 13 | enum LoopKind { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `load_ss` is never used [INFO] [stdout] --> src/mmcif_aux.rs:20:8 [INFO] [stdout] | [INFO] [stdout] 20 | pub fn load_ss(mut data: R) -> io::Result> { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 10s [INFO] running `Command { std: "docker" "inspect" "98fc31016ac4e6612af18731b1dbd45d425bc897d3e31fc83da44abd7824a6c9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "98fc31016ac4e6612af18731b1dbd45d425bc897d3e31fc83da44abd7824a6c9", kill_on_drop: false }` [INFO] [stdout] 98fc31016ac4e6612af18731b1dbd45d425bc897d3e31fc83da44abd7824a6c9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ff2228572c0cccfd7a367dc50b6ccb3ae9ccbab4a2158a85d3c03b585c200cd2 [INFO] running `Command { std: "docker" "start" "-a" "ff2228572c0cccfd7a367dc50b6ccb3ae9ccbab4a2158a85d3c03b585c200cd2", kill_on_drop: false }` [INFO] [stdout] warning: unused import: `f64::consts::TAU` [INFO] [stdout] --> src/bond_inference.rs:10:33 [INFO] [stdout] | [INFO] [stdout] 10 | use std::{collections::HashMap, f64::consts::TAU}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `ss_load` [INFO] [stdout] --> src/mmcif.rs:277:13 [INFO] [stdout] | [INFO] [stdout] 277 | let ss_load = Instant::now(); [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ss_load` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `temperature_factor` [INFO] [stdout] --> src/pdbqt.rs:174:21 [INFO] [stdout] | [INFO] [stdout] 174 | let temperature_factor = parse_optional_f32(line[60..66].trim())?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_temperature_factor` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> src/pdbqt.rs:283:14 [INFO] [stdout] | [INFO] [stdout] 283 | for (i, atom) in self.atoms.iter().enumerate() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pubchem_cid` is assigned to, but never used [INFO] [stdout] --> src/sdf.rs:167:13 [INFO] [stdout] | [INFO] [stdout] 167 | let mut pubchem_cid = None; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_pubchem_cid` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `pubchem_cid` is never read [INFO] [stdout] --> src/sdf.rs:193:13 [INFO] [stdout] | [INFO] [stdout] 193 | pubchem_cid = Some(v); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `pubchem_cid` is never read [INFO] [stdout] --> src/sdf.rs:176:21 [INFO] [stdout] | [INFO] [stdout] 176 | pubchem_cid = Some(v); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_f32` is never used [INFO] [stdout] --> src/pdbqt.rs:37:4 [INFO] [stdout] | [INFO] [stdout] 37 | fn parse_f32(s: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `TorsionStatus` is never used [INFO] [stdout] --> src/pdbqt.rs:54:6 [INFO] [stdout] | [INFO] [stdout] 54 | enum TorsionStatus { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `LoopKind` is never used [INFO] [stdout] --> src/mmcif_aux.rs:13:6 [INFO] [stdout] | [INFO] [stdout] 13 | enum LoopKind { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `load_ss` is never used [INFO] [stdout] --> src/mmcif_aux.rs:20:8 [INFO] [stdout] | [INFO] [stdout] 20 | pub fn load_ss(mut data: R) -> io::Result> { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling bio_files v0.3.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `f64::consts::TAU` [INFO] [stdout] --> src/bond_inference.rs:10:33 [INFO] [stdout] | [INFO] [stdout] 10 | use std::{collections::HashMap, f64::consts::TAU}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `ss_load` [INFO] [stdout] --> src/mmcif.rs:277:13 [INFO] [stdout] | [INFO] [stdout] 277 | let ss_load = Instant::now(); [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ss_load` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `temperature_factor` [INFO] [stdout] --> src/pdbqt.rs:174:21 [INFO] [stdout] | [INFO] [stdout] 174 | let temperature_factor = parse_optional_f32(line[60..66].trim())?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_temperature_factor` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> src/pdbqt.rs:283:14 [INFO] [stdout] | [INFO] [stdout] 283 | for (i, atom) in self.atoms.iter().enumerate() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `pubchem_cid` is assigned to, but never used [INFO] [stdout] --> src/sdf.rs:167:13 [INFO] [stdout] | [INFO] [stdout] 167 | let mut pubchem_cid = None; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_pubchem_cid` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `pubchem_cid` is never read [INFO] [stdout] --> src/sdf.rs:193:13 [INFO] [stdout] | [INFO] [stdout] 193 | pubchem_cid = Some(v); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `pubchem_cid` is never read [INFO] [stdout] --> src/sdf.rs:176:21 [INFO] [stdout] | [INFO] [stdout] 176 | pubchem_cid = Some(v); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_f32` is never used [INFO] [stdout] --> src/pdbqt.rs:37:4 [INFO] [stdout] | [INFO] [stdout] 37 | fn parse_f32(s: &str) -> io::Result { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `TorsionStatus` is never used [INFO] [stdout] --> src/pdbqt.rs:54:6 [INFO] [stdout] | [INFO] [stdout] 54 | enum TorsionStatus { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `LoopKind` is never used [INFO] [stdout] --> src/mmcif_aux.rs:13:6 [INFO] [stdout] | [INFO] [stdout] 13 | enum LoopKind { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `load_ss` is never used [INFO] [stdout] --> src/mmcif_aux.rs:20:8 [INFO] [stdout] | [INFO] [stdout] 20 | pub fn load_ss(mut data: R) -> io::Result> { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.89s [INFO] running `Command { std: "docker" "inspect" "ff2228572c0cccfd7a367dc50b6ccb3ae9ccbab4a2158a85d3c03b585c200cd2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ff2228572c0cccfd7a367dc50b6ccb3ae9ccbab4a2158a85d3c03b585c200cd2", kill_on_drop: false }` [INFO] [stdout] ff2228572c0cccfd7a367dc50b6ccb3ae9ccbab4a2158a85d3c03b585c200cd2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 2a276d06d74eb1f6c7e9d68c31aea20ea140fd1df5621a43b09474a301761cfa [INFO] running `Command { std: "docker" "start" "-a" "2a276d06d74eb1f6c7e9d68c31aea20ea140fd1df5621a43b09474a301761cfa", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `f64::consts::TAU` [INFO] [stderr] --> src/bond_inference.rs:10:33 [INFO] [stderr] | [INFO] [stderr] 10 | use std::{collections::HashMap, f64::consts::TAU}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `ss_load` [INFO] [stderr] --> src/mmcif.rs:277:13 [INFO] [stderr] | [INFO] [stderr] 277 | let ss_load = Instant::now(); [INFO] [stderr] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ss_load` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `temperature_factor` [INFO] [stderr] --> src/pdbqt.rs:174:21 [INFO] [stderr] | [INFO] [stderr] 174 | let temperature_factor = parse_optional_f32(line[60..66].trim())?; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_temperature_factor` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `i` [INFO] [stderr] --> src/pdbqt.rs:283:14 [INFO] [stderr] | [INFO] [stderr] 283 | for (i, atom) in self.atoms.iter().enumerate() { [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stderr] [INFO] [stderr] warning: variable `pubchem_cid` is assigned to, but never used [INFO] [stderr] --> src/sdf.rs:167:13 [INFO] [stderr] | [INFO] [stderr] 167 | let mut pubchem_cid = None; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: consider using `_pubchem_cid` instead [INFO] [stderr] [INFO] [stderr] warning: value assigned to `pubchem_cid` is never read [INFO] [stderr] --> src/sdf.rs:193:13 [INFO] [stderr] | [INFO] [stderr] 193 | pubchem_cid = Some(v); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = help: maybe it is overwritten before being read? [INFO] [stderr] = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: value assigned to `pubchem_cid` is never read [INFO] [stderr] --> src/sdf.rs:176:21 [INFO] [stderr] | [INFO] [stderr] 176 | pubchem_cid = Some(v); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = help: maybe it is overwritten before being read? [INFO] [stderr] [INFO] [stderr] warning: function `parse_f32` is never used [INFO] [stderr] --> src/pdbqt.rs:37:4 [INFO] [stderr] | [INFO] [stderr] 37 | fn parse_f32(s: &str) -> io::Result { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: enum `TorsionStatus` is never used [INFO] [stderr] --> src/pdbqt.rs:54:6 [INFO] [stderr] | [INFO] [stderr] 54 | enum TorsionStatus { [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: enum `LoopKind` is never used [INFO] [stderr] --> src/mmcif_aux.rs:13:6 [INFO] [stderr] | [INFO] [stderr] 13 | enum LoopKind { [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `load_ss` is never used [INFO] [stderr] --> src/mmcif_aux.rs:20:8 [INFO] [stderr] | [INFO] [stderr] 20 | pub fn load_ss(mut data: R) -> io::Result> { [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `bio_files` (lib) generated 11 warnings (run `cargo fix --lib -p bio_files` to apply 4 suggestions) [INFO] [stderr] warning: `bio_files` (lib test) generated 11 warnings (11 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.28s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/bio_files-7260e6ca2dc44d76) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests bio_files [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "2a276d06d74eb1f6c7e9d68c31aea20ea140fd1df5621a43b09474a301761cfa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2a276d06d74eb1f6c7e9d68c31aea20ea140fd1df5621a43b09474a301761cfa", kill_on_drop: false }` [INFO] [stdout] 2a276d06d74eb1f6c7e9d68c31aea20ea140fd1df5621a43b09474a301761cfa