[INFO] fetching crate bamslice 0.1.1... [INFO] testing bamslice-0.1.1 against try#c2e32f1c9652b13ed99608599c1e855462f421f3 for pr-146098-7 [INFO] extracting crate bamslice 0.1.1 into /workspace/builds/worker-2-tc2/source [INFO] started tweaking crates.io crate bamslice 0.1.1 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate bamslice 0.1.1 [INFO] tweaked toml for crates.io crate bamslice 0.1.1 written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate bamslice 0.1.1 on toolchain c2e32f1c9652b13ed99608599c1e855462f421f3 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate bamslice 0.1.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 0358e92d238dbaee79ba4896f898951243ce03dd1989dc7e0b936bf004506d7a [INFO] running `Command { std: "docker" "start" "-a" "0358e92d238dbaee79ba4896f898951243ce03dd1989dc7e0b936bf004506d7a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0358e92d238dbaee79ba4896f898951243ce03dd1989dc7e0b936bf004506d7a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0358e92d238dbaee79ba4896f898951243ce03dd1989dc7e0b936bf004506d7a", kill_on_drop: false }` [INFO] [stdout] 0358e92d238dbaee79ba4896f898951243ce03dd1989dc7e0b936bf004506d7a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4733f451ee8c4e0b030712bc24e7059233406456f37e053fd3005d95b06c7d96 [INFO] running `Command { std: "docker" "start" "-a" "4733f451ee8c4e0b030712bc24e7059233406456f37e053fd3005d95b06c7d96", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.102 [INFO] [stderr] Compiling unicode-ident v1.0.20 [INFO] [stderr] Compiling stable_deref_trait v1.2.1 [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Compiling glob v0.3.3 [INFO] [stderr] Compiling regex-syntax v0.8.8 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling cfg-if v1.0.4 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling smallvec v1.15.1 [INFO] [stderr] Compiling cc v1.2.41 [INFO] [stderr] Compiling bitflags v2.10.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling libloading v0.8.9 [INFO] [stderr] Compiling anstyle-query v1.1.4 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.2 [INFO] [stderr] Compiling anstyle v1.0.13 [INFO] [stderr] Compiling percent-encoding v2.3.2 [INFO] [stderr] Compiling thiserror v2.0.17 [INFO] [stderr] Compiling clap_lex v0.7.6 [INFO] [stderr] Compiling log v0.4.28 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling form_urlencoded v1.2.2 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling jiff v0.2.15 [INFO] [stderr] Compiling anstream v0.6.21 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling clap_builder v4.5.50 [INFO] [stderr] Compiling quote v1.0.41 [INFO] [stderr] Compiling syn v2.0.108 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling openssl-src v300.5.4+3.5.4 [INFO] [stderr] Compiling regex-automata v0.4.13 [INFO] [stderr] Compiling openssl-sys v0.9.110 [INFO] [stderr] Compiling curl-sys v0.4.83+curl-8.15.0 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Compiling regex v1.12.2 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling env_filter v0.1.4 [INFO] [stderr] Compiling env_logger v0.11.8 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling zerovec-derive v0.11.1 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling thiserror-impl v2.0.17 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Compiling clap_derive v4.5.49 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.0 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling clap v4.5.50 [INFO] [stderr] Compiling yoke v0.8.0 [INFO] [stderr] Compiling zerovec v0.11.4 [INFO] [stderr] Compiling zerotrie v0.2.2 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling tinystr v0.8.1 [INFO] [stderr] Compiling potential_utf v0.1.3 [INFO] [stderr] Compiling icu_collections v2.0.0 [INFO] [stderr] Compiling icu_locale_core v2.0.0 [INFO] [stderr] Compiling icu_provider v2.0.0 [INFO] [stderr] Compiling icu_normalizer v2.0.0 [INFO] [stderr] Compiling icu_properties v2.0.1 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Compiling idna_adapter v1.2.1 [INFO] [stderr] Compiling idna v1.1.0 [INFO] [stderr] Compiling url v2.5.7 [INFO] [stderr] Compiling rust-htslib v0.51.0 [INFO] [stderr] Compiling bamslice v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 20s [INFO] running `Command { std: "docker" "inspect" "4733f451ee8c4e0b030712bc24e7059233406456f37e053fd3005d95b06c7d96", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4733f451ee8c4e0b030712bc24e7059233406456f37e053fd3005d95b06c7d96", kill_on_drop: false }` [INFO] [stdout] 4733f451ee8c4e0b030712bc24e7059233406456f37e053fd3005d95b06c7d96 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0ab853a1e2e90f189097e3bd3977d79fd571ead4d254d93d65fe2e8e4842c85b [INFO] running `Command { std: "docker" "start" "-a" "0ab853a1e2e90f189097e3bd3977d79fd571ead4d254d93d65fe2e8e4842c85b", kill_on_drop: false }` [INFO] [stderr] Compiling bamslice v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 2.03s [INFO] running `Command { std: "docker" "inspect" "0ab853a1e2e90f189097e3bd3977d79fd571ead4d254d93d65fe2e8e4842c85b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0ab853a1e2e90f189097e3bd3977d79fd571ead4d254d93d65fe2e8e4842c85b", kill_on_drop: false }` [INFO] [stdout] 0ab853a1e2e90f189097e3bd3977d79fd571ead4d254d93d65fe2e8e4842c85b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 858d0b43e4d47720f28752dbad8ebe8264dbb080d5c3dbc9f6e61c62cfa21491 [INFO] running `Command { std: "docker" "start" "-a" "858d0b43e4d47720f28752dbad8ebe8264dbb080d5c3dbc9f6e61c62cfa21491", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.15s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/bamslice-183a795ea704de74) [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test tests::test_is_read1_unpaired ... ok [INFO] [stdout] test tests::test_is_read1_paired_last ... ok [INFO] [stdout] test tests::test_is_read1_paired_first ... ok [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/bamslice-f3c6b5cc1c9a639e) [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Running tests/integration_test.rs (/opt/rustwide/target/debug/deps/integration_test-0066763843204895) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 7 tests [INFO] [stdout] test test_ont_reads ... ok [INFO] [stdout] test test_split_processing_produces_all_reads_no_dupes ... ok [INFO] [stdout] test test_interleaved_pairs_in_output ... ok [INFO] [stdout] test test_complete_pairs_at_boundaries ... ok [INFO] [stdout] test test_first_read_content ... ok [INFO] [stdout] test test_whole_file_processing ... ok [INFO] [stdout] test test_blocks_start_with_read1 ... ok [INFO] [stderr] Doc-tests bamslice [INFO] [stdout] [INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.41s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "858d0b43e4d47720f28752dbad8ebe8264dbb080d5c3dbc9f6e61c62cfa21491", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "858d0b43e4d47720f28752dbad8ebe8264dbb080d5c3dbc9f6e61c62cfa21491", kill_on_drop: false }` [INFO] [stdout] 858d0b43e4d47720f28752dbad8ebe8264dbb080d5c3dbc9f6e61c62cfa21491