[INFO] fetching crate alignoth 1.3.0...
[INFO] testing alignoth-1.3.0 against try#c2e32f1c9652b13ed99608599c1e855462f421f3 for pr-146098-7
[INFO] extracting crate alignoth 1.3.0 into /workspace/builds/worker-7-tc2/source
[INFO] started tweaking crates.io crate alignoth 1.3.0
[INFO] finished tweaking crates.io crate alignoth 1.3.0
[INFO] tweaked toml for crates.io crate alignoth 1.3.0 written to /workspace/builds/worker-7-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate alignoth 1.3.0 on toolchain c2e32f1c9652b13ed99608599c1e855462f421f3
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate alignoth 1.3.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 01ee619866bd9ee2b0f40b89ce5b9c4cc9ebb9cd50db35595e45cee7e245c1d9
[INFO] running `Command { std: "docker" "start" "-a" "01ee619866bd9ee2b0f40b89ce5b9c4cc9ebb9cd50db35595e45cee7e245c1d9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "01ee619866bd9ee2b0f40b89ce5b9c4cc9ebb9cd50db35595e45cee7e245c1d9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "01ee619866bd9ee2b0f40b89ce5b9c4cc9ebb9cd50db35595e45cee7e245c1d9", kill_on_drop: false }`
[INFO] [stdout] 01ee619866bd9ee2b0f40b89ce5b9c4cc9ebb9cd50db35595e45cee7e245c1d9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 04479173cc1792fe51675453bd538f546be0613e735d4b898008880a55046349
[INFO] running `Command { std: "docker" "start" "-a" "04479173cc1792fe51675453bd538f546be0613e735d4b898008880a55046349", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.172
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[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
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[INFO] [stderr]    Compiling linux-raw-sys v0.9.4
[INFO] [stderr]    Compiling time-macros v0.2.22
[INFO] [stderr]    Compiling chrono v0.4.41
[INFO] [stderr]    Compiling rand_core v0.9.3
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[INFO] [stderr]    Compiling openssl-src v300.5.0+3.5.0
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[INFO] [stderr]    Compiling itertools v0.14.0
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[INFO] [stderr]    Compiling libz-sys v1.1.22
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[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
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[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling globwalk v0.9.1
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]    Compiling serde_json v1.0.145
[INFO] [stderr]    Compiling ndarray v0.16.1
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[INFO] [stderr]    Compiling yoke-derive v0.7.5
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[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling serde_derive v1.0.228
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[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive_more-impl v2.0.1
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[INFO] [stderr]    Compiling enum-map-derive v0.17.0
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[INFO] [stderr]    Compiling yoke v0.7.5
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[INFO] [stderr]    Compiling crossterm v0.29.0
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[INFO] [stderr]    Compiling pest v2.8.0
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[INFO] [stderr]    Compiling dyn-clone v1.0.19
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling unicode-width v0.2.1
[INFO] [stderr]    Compiling tokio v1.48.0
[INFO] [stderr]    Compiling simplelog v0.12.2
[INFO] [stderr]    Compiling rand v0.9.2
[INFO] [stderr]    Compiling lz-str v0.2.1
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling inquire v0.9.1
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling tinystr v0.7.6
[INFO] [stderr]    Compiling icu_collections v1.5.0
[INFO] [stderr]    Compiling icu_locid v1.5.0
[INFO] [stderr]    Compiling pest_meta v2.8.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.10.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling icu_provider v1.5.0
[INFO] [stderr]    Compiling pest_generator v2.8.0
[INFO] [stderr]    Compiling icu_locid_transform v1.5.0
[INFO] [stderr]    Compiling pest_derive v2.8.0
[INFO] [stderr]    Compiling tera v1.20.0
[INFO] [stderr]    Compiling icu_properties v1.5.1
[INFO] [stderr]    Compiling structopt v0.3.26
[INFO] [stderr]    Compiling icu_normalizer v1.5.0
[INFO] [stderr]    Compiling idna_adapter v1.2.0
[INFO] [stderr]    Compiling idna v1.0.3
[INFO] [stderr]    Compiling url v2.5.4
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling rust-htslib v0.51.0
[INFO] [stderr]    Compiling alignoth v1.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 19s
[INFO] running `Command { std: "docker" "inspect" "04479173cc1792fe51675453bd538f546be0613e735d4b898008880a55046349", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "04479173cc1792fe51675453bd538f546be0613e735d4b898008880a55046349", kill_on_drop: false }`
[INFO] [stdout] 04479173cc1792fe51675453bd538f546be0613e735d4b898008880a55046349
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4205ba58faf201e40feec72072977907e41231c4786cfda3863ddbff721ec9b0
[INFO] running `Command { std: "docker" "start" "-a" "4205ba58faf201e40feec72072977907e41231c4786cfda3863ddbff721ec9b0", kill_on_drop: false }`
[INFO] [stderr]    Compiling alignoth v1.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 3.76s
[INFO] running `Command { std: "docker" "inspect" "4205ba58faf201e40feec72072977907e41231c4786cfda3863ddbff721ec9b0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4205ba58faf201e40feec72072977907e41231c4786cfda3863ddbff721ec9b0", kill_on_drop: false }`
[INFO] [stdout] 4205ba58faf201e40feec72072977907e41231c4786cfda3863ddbff721ec9b0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] b8ab6bfe9b76b208fb47532c511ceafd8fd860dfb3426c29bc1572ed1b3f248f
[INFO] running `Command { std: "docker" "start" "-a" "b8ab6bfe9b76b208fb47532c511ceafd8fd860dfb3426c29bc1572ed1b3f248f", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.32s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/alignoth-3b2338dc9f7a842b)
[INFO] [stdout] 
[INFO] [stdout] running 31 tests
[INFO] [stdout] test cli::tests::test_interval_deserialization ... ok
[INFO] [stdout] test cli::tests::test_around_deserialization ... ok
[INFO] [stdout] test cli::tests::test_data_format_to_string ... ok
[INFO] [stdout] test cli::tests::test_data_format_deserialization ... ok
[INFO] [stdout] test plot::tests::test_aux_record_to_string ... ok
[INFO] [stdout] test plot::tests::test_aux_record ... ok
[INFO] [stdout] test cli::tests::test_region_length ... ok
[INFO] [stdout] test plot::tests::test_coverage_from_reads_basic_overlap ... ok
[INFO] [stdout] test highlight::tests::test_bed_intervals ... ok
[INFO] [stdout] test highlight::tests::test_vcf_intervals ... ok
[INFO] [stdout] test cli::tests::test_region_from_around ... ok
[INFO] [stdout] test cli::tests::test_region_deserialization ... ok
[INFO] [stdout] test plot::tests::test_empty_aux_record ... ok
[INFO] [stdout] test plot::tests::test_create_plot_data ... ok
[INFO] [stdout] test plot::tests::test_fetch_reference ... ok
[INFO] [stdout] test plot::tests::test_matching_bases ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_deletion ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_from_str ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_insertion ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_string_serialization ... ok
[INFO] [stdout] test plot::tests::test_read_ordering ... ok
[INFO] [stdout] test plot::tests::test_read_ordering_with_max_read_depth ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_match ... ok
[INFO] [stdout] test utils::tests::test_ellipsis ... ok
[INFO] [stdout] test utils::tests::test_get_fasta_contigs ... ok
[INFO] [stdout] test utils::tests::test_get_fasta_length ... ok
[INFO] [stdout] test utils::tests::test_get_ref_and_bam_from_empty_cwd ... ok
[INFO] [stdout] test tests::test_write_files ... ok
[INFO] [stdout] test highlight::tests::test_vcf_interval_out_of_bounds ... ok
[INFO] [stdout] test plot::tests::test_read_position_with_softclips ... ok
[INFO] [stdout] test plot::tests::test_create_plot_data_2 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 31 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.19s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "b8ab6bfe9b76b208fb47532c511ceafd8fd860dfb3426c29bc1572ed1b3f248f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b8ab6bfe9b76b208fb47532c511ceafd8fd860dfb3426c29bc1572ed1b3f248f", kill_on_drop: false }`
[INFO] [stdout] b8ab6bfe9b76b208fb47532c511ceafd8fd860dfb3426c29bc1572ed1b3f248f