[INFO] cloning repository https://github.com/sstadick/rumi [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sstadick/rumi" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsstadick%2Frumi", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsstadick%2Frumi'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 34a92eb41857a1a1c4c096f516a0271ed57d16f4 [INFO] testing sstadick/rumi against try#c2e32f1c9652b13ed99608599c1e855462f421f3 for pr-146098-7 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsstadick%2Frumi" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/sstadick/rumi [INFO] finished tweaking git repo https://github.com/sstadick/rumi [INFO] tweaked toml for git repo https://github.com/sstadick/rumi written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/sstadick/rumi on toolchain c2e32f1c9652b13ed99608599c1e855462f421f3 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/sstadick/rumi already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bdcf16cf7b345c1d2130a4cb428c4f943cbc60bf6b5274844c7b6b9c6b37ae39 [INFO] running `Command { std: "docker" "start" "-a" "bdcf16cf7b345c1d2130a4cb428c4f943cbc60bf6b5274844c7b6b9c6b37ae39", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bdcf16cf7b345c1d2130a4cb428c4f943cbc60bf6b5274844c7b6b9c6b37ae39", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bdcf16cf7b345c1d2130a4cb428c4f943cbc60bf6b5274844c7b6b9c6b37ae39", kill_on_drop: false }` [INFO] [stdout] bdcf16cf7b345c1d2130a4cb428c4f943cbc60bf6b5274844c7b6b9c6b37ae39 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3841379c79be1d5a250ed7814d6c4ad90382e830f1edc0044524ea0b891c03de [INFO] running `Command { std: "docker" "start" "-a" "3841379c79be1d5a250ed7814d6c4ad90382e830f1edc0044524ea0b891c03de", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.37 [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling cfg-if v0.1.9 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling pkg-config v0.3.14 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Compiling clang-sys v0.28.0 [INFO] [stderr] Compiling aho-corasick v0.7.6 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Compiling regex-syntax v0.6.12 [INFO] [stderr] Compiling syn v0.15.39 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling log v0.4.7 [INFO] [stderr] Compiling memoffset v0.5.1 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling atty v0.2.13 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling arrayvec v0.4.11 [INFO] [stderr] Compiling backtrace-sys v0.1.32 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling nodrop v0.1.13 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bindgen v0.51.1 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling termcolor v1.0.5 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling rustc-hash v1.0.1 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling which v3.1.0 [INFO] [stderr] Compiling matches v0.1.8 [INFO] [stderr] Compiling doc-comment v0.3.1 [INFO] [stderr] Compiling regex v1.3.1 [INFO] [stderr] Compiling scopeguard v1.0.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling serde v1.0.97 [INFO] [stderr] Compiling smallvec v0.6.10 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling unicode-normalization v0.1.8 [INFO] [stderr] Compiling crossbeam-epoch v0.7.2 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Compiling rayon-core v1.5.0 [INFO] [stderr] Compiling rustc-demangle v0.1.16 [INFO] [stderr] Compiling either v1.5.2 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling idna v0.2.0 [INFO] [stderr] Compiling backtrace v0.3.40 [INFO] [stderr] Compiling crossbeam-deque v0.6.3 [INFO] [stderr] Compiling crossbeam-queue v0.1.2 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling url v2.1.0 [INFO] [stderr] Compiling itertools v0.8.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling rayon v1.1.0 [INFO] [stderr] Compiling snafu-derive v0.5.0 [INFO] [stderr] Compiling serde_derive v1.0.97 [INFO] [stderr] Compiling basebits v1.2.0 [INFO] [stderr] Compiling snafu v0.5.0 [INFO] [stderr] Compiling rust-htslib v0.26.0 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] error: failed to run custom build command for `rust-htslib v0.26.0` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/rust-htslib-6f0ffefaa74d37b9/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] OPT_LEVEL = Some("0") [INFO] [stderr] TARGET = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] HOST = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] CC_x86_64-unknown-linux-gnu = None [INFO] [stderr] CC_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CC = None [INFO] [stderr] CC = None [INFO] [stderr] CFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CFLAGS = None [INFO] [stderr] CFLAGS = None [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some("true") [INFO] [stderr] echo '/* Default config.h generated by Makefile */' > config.h [INFO] [stderr] echo '#define HAVE_LIBBZ2 1' >> config.h [INFO] [stderr] echo '#define HAVE_LIBLZMA 1' >> config.h [INFO] [stderr] echo '#define HAVE_LZMA_H 1' >> config.h [INFO] [stderr] echo '#define HAVE_FSEEKO 1' >> config.h [INFO] [stderr] echo '#define HAVE_DRAND48 1' >> config.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o kfunc.o kfunc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o knetfile.o knetfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o kstring.o kstring.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o bcf_sr_sort.o bcf_sr_sort.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o bgzf.o bgzf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o errmod.o errmod.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o faidx.o faidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o hfile.o hfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o hfile_net.o hfile_net.c [INFO] [stderr] echo '#define HTS_VERSION "1.9"' > version.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o hts.o hts.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o hts_os.o hts_os.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o md5.o md5.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o multipart.o multipart.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o probaln.o probaln.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o realn.o realn.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o regidx.o regidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o sam.o sam.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o synced_bcf_reader.o synced_bcf_reader.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o vcf_sweep.o vcf_sweep.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o tbx.o tbx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o textutils.o textutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o thread_pool.o thread_pool.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o vcf.o vcf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o vcfutils.o vcfutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_codecs.o cram/cram_codecs.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_decode.o cram/cram_decode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_encode.o cram/cram_encode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_external.o cram/cram_external.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_index.o cram/cram_index.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_io.o cram/cram_io.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_samtools.o cram/cram_samtools.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_stats.o cram/cram_stats.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/files.o cram/files.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/mFILE.o cram/mFILE.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/open_trace_file.o cram/open_trace_file.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/rANS_static.o cram/rANS_static.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/sam_header.o cram/sam_header.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/string_alloc.o cram/string_alloc.c [INFO] [stderr] ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o [INFO] [stderr] ranlib libhts.a [INFO] [stderr] running: "cc" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-static" "-I" "/opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include" "-o" "/opt/rustwide/target/debug/build/rust-htslib-c132e775c77b731f/out/wrapper.o" "-c" "wrapper.c" [INFO] [stderr] exit status: 0 [INFO] [stderr] AR_x86_64-unknown-linux-gnu = None [INFO] [stderr] AR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_AR = None [INFO] [stderr] AR = None [INFO] [stderr] running: "ar" "crs" "/opt/rustwide/target/debug/build/rust-htslib-c132e775c77b731f/out/libwrapper.a" "/opt/rustwide/target/debug/build/rust-htslib-c132e775c77b731f/out/wrapper.o" [INFO] [stderr] exit status: 0 [INFO] [stderr] cargo:rustc-link-lib=static=wrapper [INFO] [stderr] cargo:rustc-link-search=native=/opt/rustwide/target/debug/build/rust-htslib-c132e775c77b731f/out [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] hts.c: In function 'hts_idx_init': [INFO] [stderr] hts.c:1386:59: warning: overflow in conversion from 'uint32_t' {aka 'unsigned int'} to 'int' changes value from 'idx->z.last_bin = 4294967295' to '-1' [-Woverflow] [INFO] [stderr] 1386 | idx->z.save_bin = idx->z.save_tid = idx->z.last_tid = idx->z.last_bin = 0xffffffffu; [INFO] [stderr] | ^~~ [INFO] [stderr] [INFO] [stderr] thread 'main' (1506) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.6/src/fallback.rs:594:9: [INFO] [stderr] "htsFormat_struct_(unnamed_at__/htslib/htslib/hts_h_154_5)" is not a valid Ident [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x559b4ad86262 - std::backtrace_rs::backtrace::libunwind::trace::h9ea1e07ac77a25d7 [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x559b4ad86262 - std::backtrace_rs::backtrace::trace_unsynchronized::h72b75eb83b53d15a [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x559b4ad86262 - std::sys::backtrace::_print_fmt::h255777b7ec902439 [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x559b4ad86262 - ::fmt::h8a1ac49fcd7ee8ce [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x559b4ad9734f - core::fmt::rt::Argument::fmt::h635cbf3c6754cc90 [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x559b4ad9734f - core::fmt::write::hbdcc0ec4f1bab1db [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/core/src/fmt/mod.rs:1469:25 [INFO] [stderr] 6: 0x559b4ad54393 - std::io::default_write_fmt::hb29d13affe7e9cd0 [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x559b4ad54393 - std::io::Write::write_fmt::hec441b8c6eca32b9 [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x559b4ad60182 - std::sys::backtrace::BacktraceLock::print::h052febbd86f7bf07 [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x559b4ad6384f - std::panicking::default_hook::{{closure}}::h66aeee20dd470abb [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x559b4ad636a9 - std::panicking::default_hook::h9d66b9642014ce48 [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x559b4ad63e25 - std::panicking::panic_with_hook::h6d5921a1a1fa5a8e [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x559b4ad63cba - std::panicking::panic_handler::{{closure}}::hafeef6f707d43542 [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/panicking.rs:707:13 [INFO] [stderr] 13: 0x559b4ad602b9 - std::sys::backtrace::__rust_end_short_backtrace::h08cbc3319a3d0120 [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x559b4ad4845d - __rustc[ce5c411ff86ab1b2]::rust_begin_unwind [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x559b4ada1470 - core::panicking::panic_fmt::h774fb860369a0f7b [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/core/src/panicking.rs:80:14 [INFO] [stderr] 16: 0x559b4ac5b47f - proc_macro2::fallback::validate_ident::he438ace861a4efe8 [INFO] [stderr] 17: 0x559b4ac5dc01 - proc_macro2::fallback::Ident::_new::hc23fbc0f1809f609 [INFO] [stderr] 18: 0x559b4ac5dbbf - proc_macro2::fallback::Ident::new::h82df1f8861ebc5e7 [INFO] [stderr] 19: 0x559b4ac53a38 - proc_macro2::Ident::new::hfc2ea058c17abfcc [INFO] [stderr] 20: 0x559b4aaec475 - bindgen::ir::context::BindgenContext::rust_ident_raw::h2711131aff4f2de9 [INFO] [stderr] 21: 0x559b4aaea470 - bindgen::ir::context::BindgenContext::rust_ident::h71cdec48e2edbcc3 [INFO] [stderr] 22: 0x559b4a9fbcba - ::codegen::h80410f0dda6f64a1 [INFO] [stderr] 23: 0x559b4aa33dbf - ::codegen::he7d854651c6ba45d [INFO] [stderr] 24: 0x559b4aa17599 - ::codegen::h947486a727b0251f [INFO] [stderr] 25: 0x559b4aa039a1 - ::codegen::h80410f0dda6f64a1 [INFO] [stderr] 26: 0x559b4aa33dbf - ::codegen::he7d854651c6ba45d [INFO] [stderr] 27: 0x559b4aa17599 - ::codegen::h947486a727b0251f [INFO] [stderr] 28: 0x559b4aad20f5 - ::codegen::{{closure}}::h28a4bb31fdccd14e [INFO] [stderr] 29: 0x559b4aa39011 - ::codegen::hcf2e4bfe7e906949 [INFO] [stderr] 30: 0x559b4aa17574 - ::codegen::h947486a727b0251f [INFO] [stderr] 31: 0x559b4aadef3c - bindgen::codegen::codegen::{{closure}}::h815920b8c03b2f7b [INFO] [stderr] 32: 0x559b4aaf71f8 - bindgen::ir::context::BindgenContext::gen::h709a4fd030a5166a [INFO] [stderr] 33: 0x559b4aade7cd - bindgen::codegen::codegen::hdce766e1a27e6a5f [INFO] [stderr] 34: 0x559b4ab1bb56 - bindgen::Bindings::generate::hc1d82a24c61f4d31 [INFO] [stderr] 35: 0x559b4ab18cb5 - bindgen::Builder::generate::h2667d448441434e3 [INFO] [stderr] 36: 0x559b4a99deef - build_script_build::main::h62a18a9ede62fd3b [INFO] [stderr] 37: 0x559b4a99f843 - core::ops::function::FnOnce::call_once::h3217bbf8ed41f95f [INFO] [stderr] 38: 0x559b4a99f526 - std::sys::backtrace::__rust_begin_short_backtrace::h1e12401c12cc420f [INFO] [stderr] 39: 0x559b4a99f489 - std::rt::lang_start::{{closure}}::he7079350f3da0fff [INFO] [stderr] 40: 0x559b4ad55cb0 - core::ops::function::impls:: for &F>::call_once::h9095abc9db71b07e [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 41: 0x559b4ad55cb0 - std::panicking::catch_unwind::do_call::h6cf5dc461761418c [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/panicking.rs:590:40 [INFO] [stderr] 42: 0x559b4ad55cb0 - std::panicking::catch_unwind::h60074fd2327f40bd [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/panicking.rs:553:19 [INFO] [stderr] 43: 0x559b4ad55cb0 - std::panic::catch_unwind::heb14fa8e39d051cf [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/panic.rs:359:14 [INFO] [stderr] 44: 0x559b4ad55cb0 - std::rt::lang_start_internal::{{closure}}::hfb550bec36306a19 [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/rt.rs:175:24 [INFO] [stderr] 45: 0x559b4ad55cb0 - std::panicking::catch_unwind::do_call::hc805f36f35b6d647 [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/panicking.rs:590:40 [INFO] [stderr] 46: 0x559b4ad55cb0 - std::panicking::catch_unwind::hb8d32f0195463ad2 [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/panicking.rs:553:19 [INFO] [stderr] 47: 0x559b4ad55cb0 - std::panic::catch_unwind::hcebe3b1d5adfc5a2 [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/panic.rs:359:14 [INFO] [stderr] 48: 0x559b4ad55cb0 - std::rt::lang_start_internal::h27f55ed238aa26df [INFO] [stderr] at /rustc/c2e32f1c9652b13ed99608599c1e855462f421f3/library/std/src/rt.rs:171:5 [INFO] [stderr] 49: 0x559b4a99f471 - std::rt::lang_start::h740e284f6c6e31f0 [INFO] [stderr] 50: 0x559b4a9a18b5 - main [INFO] [stderr] 51: 0x78e1ee9551ca - [INFO] [stderr] 52: 0x78e1ee95528b - __libc_start_main [INFO] [stderr] 53: 0x559b4a99c8f5 - _start [INFO] [stderr] 54: 0x0 - [INFO] running `Command { std: "docker" "inspect" "3841379c79be1d5a250ed7814d6c4ad90382e830f1edc0044524ea0b891c03de", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3841379c79be1d5a250ed7814d6c4ad90382e830f1edc0044524ea0b891c03de", kill_on_drop: false }` [INFO] [stdout] 3841379c79be1d5a250ed7814d6c4ad90382e830f1edc0044524ea0b891c03de