[INFO] fetching crate omics-variation 0.2.0... [INFO] testing omics-variation-0.2.0 against master#c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 for pr-146098-7 [INFO] extracting crate omics-variation 0.2.0 into /workspace/builds/worker-7-tc1/source [INFO] started tweaking crates.io crate omics-variation 0.2.0 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate omics-variation 0.2.0 [INFO] tweaked toml for crates.io crate omics-variation 0.2.0 written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate omics-variation 0.2.0 on toolchain c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate omics-variation 0.2.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded anyhow v1.0.94 [INFO] [stderr] Downloaded thiserror-impl v2.0.9 [INFO] [stderr] Downloaded omics-molecule v0.1.0 [INFO] [stderr] Downloaded thiserror v2.0.9 [INFO] [stderr] Downloaded omics-coordinate v0.2.0 [INFO] [stderr] Downloaded omics-core v0.1.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 5ace52e45415f982c8ece20a01f2b42d8d00bfc4c413f61d47ac08a0a899f907 [INFO] running `Command { std: "docker" "start" "-a" "5ace52e45415f982c8ece20a01f2b42d8d00bfc4c413f61d47ac08a0a899f907", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5ace52e45415f982c8ece20a01f2b42d8d00bfc4c413f61d47ac08a0a899f907", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5ace52e45415f982c8ece20a01f2b42d8d00bfc4c413f61d47ac08a0a899f907", kill_on_drop: false }` [INFO] [stdout] 5ace52e45415f982c8ece20a01f2b42d8d00bfc4c413f61d47ac08a0a899f907 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ceb8a5a663e844408b770a7de3fabbdb0cbedc2c45351ee658dc5a82b8b0a11d [INFO] running `Command { std: "docker" "start" "-a" "ceb8a5a663e844408b770a7de3fabbdb0cbedc2c45351ee658dc5a82b8b0a11d", kill_on_drop: false }` [INFO] [stderr] Compiling thiserror v2.0.9 [INFO] [stderr] Compiling omics-core v0.1.0 [INFO] [stderr] Compiling quote v1.0.38 [INFO] [stderr] Compiling omics-molecule v0.1.0 [INFO] [stderr] Compiling syn v2.0.93 [INFO] [stderr] Compiling thiserror-impl v2.0.9 [INFO] [stderr] Compiling omics-coordinate v0.2.0 [INFO] [stderr] Compiling omics-variation v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 4.94s [INFO] running `Command { std: "docker" "inspect" "ceb8a5a663e844408b770a7de3fabbdb0cbedc2c45351ee658dc5a82b8b0a11d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ceb8a5a663e844408b770a7de3fabbdb0cbedc2c45351ee658dc5a82b8b0a11d", kill_on_drop: false }` [INFO] [stdout] ceb8a5a663e844408b770a7de3fabbdb0cbedc2c45351ee658dc5a82b8b0a11d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] aaae4e61fd6cfec7d05efae37e1b7e3ad56255af2fb4c9f2a87825ed42ad2ba1 [INFO] running `Command { std: "docker" "start" "-a" "aaae4e61fd6cfec7d05efae37e1b7e3ad56255af2fb4c9f2a87825ed42ad2ba1", kill_on_drop: false }` [INFO] [stderr] Compiling anyhow v1.0.94 [INFO] [stderr] Compiling omics-variation v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.85s [INFO] running `Command { std: "docker" "inspect" "aaae4e61fd6cfec7d05efae37e1b7e3ad56255af2fb4c9f2a87825ed42ad2ba1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aaae4e61fd6cfec7d05efae37e1b7e3ad56255af2fb4c9f2a87825ed42ad2ba1", kill_on_drop: false }` [INFO] [stdout] aaae4e61fd6cfec7d05efae37e1b7e3ad56255af2fb4c9f2a87825ed42ad2ba1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] e758d22d46b138d90a1ce6aaa6fab8e825dcf6a69e982d09af92ac8ece336478 [INFO] running `Command { std: "docker" "start" "-a" "e758d22d46b138d90a1ce6aaa6fab8e825dcf6a69e982d09af92ac8ece336478", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.03s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/omics_variation-7a393c8533b2b568) [INFO] [stdout] running 13 tests [INFO] [stdout] test snv::tests::it_creates_a_variant_in_a_rna_context ... ok [INFO] [stdout] test snv::tests::it_creates_a_variant_on_the_negative_strand_in_a_rna_context ... ok [INFO] [stdout] test snv::tests::it_creates_a_variant_with_no_specified_strand_in_a_rna_context ... ok [INFO] [stdout] test snv::tests::it_creates_a_variant_with_no_specified_strand_in_a_dna_context ... ok [INFO] [stdout] test snv::tests::it_fails_when_attempting_to_represent_an_empty_pair ... ok [INFO] [stdout] test snv::tests::it_fails_when_creating_a_variant_with_identical_nucleotides ... ok [INFO] [stdout] test snv::tests::it_fails_when_attempting_to_represent_an_insertion ... ok [INFO] [stdout] test snv::tests::it_fails_when_attempting_to_represent_a_deletion ... ok [INFO] [stdout] test tests::it_errors_when_attempting_to_parse_invalid_variants ... ok [INFO] [stdout] test tests::it_parses_dna_snvs_correctly ... ok [INFO] [stdout] test tests::it_serializes_correctly ... ok [INFO] [stdout] test snv::tests::it_creates_a_variant_on_the_negative_strand_in_a_dna_context ... ok [INFO] [stdout] test snv::tests::it_creates_a_variant_in_a_dna_context ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 13 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests omics_variation [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test src/snv.rs - snv::Variant::try_new (line 109) ... ok [INFO] [stdout] test src/snv.rs - snv::Variant::coordinate (line 149) ... ok [INFO] [stdout] test src/snv.rs - snv::Variant::reference (line 176) ... ok [INFO] [stdout] test src/snv.rs - snv::Variant::alternate (line 198) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.69s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "e758d22d46b138d90a1ce6aaa6fab8e825dcf6a69e982d09af92ac8ece336478", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e758d22d46b138d90a1ce6aaa6fab8e825dcf6a69e982d09af92ac8ece336478", kill_on_drop: false }` [INFO] [stdout] e758d22d46b138d90a1ce6aaa6fab8e825dcf6a69e982d09af92ac8ece336478