[INFO] fetching crate grz-check 0.2.0...
[INFO] testing grz-check-0.2.0 against master#c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 for pr-146098-7
[INFO] extracting crate grz-check 0.2.0 into /workspace/builds/worker-6-tc1/source
[INFO] started tweaking crates.io crate grz-check 0.2.0
[INFO] finished tweaking crates.io crate grz-check 0.2.0
[INFO] tweaked toml for crates.io crate grz-check 0.2.0 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate grz-check 0.2.0 on toolchain c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate grz-check 0.2.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded niffler v3.0.0
[INFO] [stderr]   Downloaded noodles-csi v0.50.0
[INFO] [stderr]   Downloaded noodles-core v0.18.0
[INFO] [stderr]   Downloaded noodles v0.100.0
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] [stderr]   Downloaded noodles-bgzf v0.42.0
[INFO] [stderr]   Downloaded noodles-bam v0.82.0
[INFO] [stderr]   Downloaded liblzma v0.3.6
[INFO] [stderr]   Downloaded noodles-sam v0.78.0
[INFO] [stderr]   Downloaded liblzma-sys v0.3.13
[INFO] [stderr]   Downloaded noodles-fastq v0.20.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] d11bc016bc6006da38a34fa3024a6775c66ba4eb66abd0731323cd463d5cab9e
[INFO] running `Command { std: "docker" "start" "-a" "d11bc016bc6006da38a34fa3024a6775c66ba4eb66abd0731323cd463d5cab9e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d11bc016bc6006da38a34fa3024a6775c66ba4eb66abd0731323cd463d5cab9e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d11bc016bc6006da38a34fa3024a6775c66ba4eb66abd0731323cd463d5cab9e", kill_on_drop: false }`
[INFO] [stdout] d11bc016bc6006da38a34fa3024a6775c66ba4eb66abd0731323cd463d5cab9e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1243e214688d65d6cdcc2687d1bd2abda8c6fed0960ffecfb730154115d50410
[INFO] running `Command { std: "docker" "start" "-a" "1243e214688d65d6cdcc2687d1bd2abda8c6fed0960ffecfb730154115d50410", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.174
[INFO] [stderr]    Compiling zlib-rs v0.5.1
[INFO] [stderr]    Compiling lexical-util v1.0.6
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling bstr v1.12.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling hashbrown v0.15.4
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.5
[INFO] [stderr]    Compiling lexical-write-integer v1.0.5
[INFO] [stderr]    Compiling lexical-parse-float v1.0.5
[INFO] [stderr]    Compiling jobserver v0.1.33
[INFO] [stderr]    Compiling noodles-core v0.18.0
[INFO] [stderr]    Compiling lexical-write-float v1.0.5
[INFO] [stderr]    Compiling cc v1.2.29
[INFO] [stderr]    Compiling indexmap v2.10.0
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling lexical-core v1.0.5
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling anstyle-query v1.1.3
[INFO] [stderr]    Compiling portable-atomic v1.11.1
[INFO] [stderr]    Compiling anstream v0.6.19
[INFO] [stderr]    Compiling console v0.16.0
[INFO] [stderr]    Compiling clap_builder v4.5.41
[INFO] [stderr]    Compiling noodles-fastq v0.20.0
[INFO] [stderr]    Compiling unit-prefix v0.5.1
[INFO] [stderr]    Compiling sha2 v0.10.9
[INFO] [stderr]    Compiling zstd-sys v2.0.15+zstd.1.5.7
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling bzip2 v0.5.2
[INFO] [stderr]    Compiling indicatif v0.18.0
[INFO] [stderr]    Compiling ctrlc v3.4.7
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling libz-rs-sys v0.5.1
[INFO] [stderr]    Compiling flate2 v1.1.2
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling clap_derive v4.5.41
[INFO] [stderr]    Compiling noodles-bgzf v0.42.0
[INFO] [stderr]    Compiling thiserror v2.0.12
[INFO] [stderr]    Compiling bgzip v0.3.1
[INFO] [stderr]    Compiling noodles-csi v0.50.0
[INFO] [stderr]    Compiling noodles-sam v0.78.0
[INFO] [stderr]    Compiling clap v4.5.41
[INFO] [stderr]    Compiling liblzma v0.3.6
[INFO] [stderr]    Compiling noodles-bam v0.82.0
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling zstd v0.13.3
[INFO] [stderr]    Compiling niffler v3.0.0
[INFO] [stderr]    Compiling noodles v0.100.0
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling grz-check v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 19s
[INFO] running `Command { std: "docker" "inspect" "1243e214688d65d6cdcc2687d1bd2abda8c6fed0960ffecfb730154115d50410", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1243e214688d65d6cdcc2687d1bd2abda8c6fed0960ffecfb730154115d50410", kill_on_drop: false }`
[INFO] [stdout] 1243e214688d65d6cdcc2687d1bd2abda8c6fed0960ffecfb730154115d50410
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 422bdae76e9110d0f54fcae92dee7fdd76a74fe010f33ef55ff4c03ba27e6b71
[INFO] running `Command { std: "docker" "start" "-a" "422bdae76e9110d0f54fcae92dee7fdd76a74fe010f33ef55ff4c03ba27e6b71", kill_on_drop: false }`
[INFO] [stderr]    Compiling noodles-sam v0.78.0
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]    Compiling tempfile v3.20.0
[INFO] [stderr]    Compiling noodles-bam v0.82.0
[INFO] [stderr]    Compiling ctrlc v3.4.7
[INFO] [stderr]    Compiling noodles v0.100.0
[INFO] [stderr]    Compiling grz-check v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 11.84s
[INFO] running `Command { std: "docker" "inspect" "422bdae76e9110d0f54fcae92dee7fdd76a74fe010f33ef55ff4c03ba27e6b71", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "422bdae76e9110d0f54fcae92dee7fdd76a74fe010f33ef55ff4c03ba27e6b71", kill_on_drop: false }`
[INFO] [stdout] 422bdae76e9110d0f54fcae92dee7fdd76a74fe010f33ef55ff4c03ba27e6b71
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 8d6dc5393f48ee23ab1d67bc7aecbe1592938a0d2f803a426ffaba4da319ceac
[INFO] running `Command { std: "docker" "start" "-a" "8d6dc5393f48ee23ab1d67bc7aecbe1592938a0d2f803a426ffaba4da319ceac", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.25s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/grz_check-c39832a2e9e38e57)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test checker::tests::test_checksum_only ... ok
[INFO] [stdout] test checker::tests::test_bam_with_mixed_warnings ... ok
[INFO] [stdout] test checker::tests::test_bam_with_multiple_secondary_alignments ... ok
[INFO] [stdout] test checker::tests::test_bam_with_multiple_hard_clipped_alignments ... ok
[INFO] [stdout] test checker::tests::test_valid_bam_check ... ok
[INFO] [stdout] test checker::tests::test_valid_pair_with_different_lengths ... ok
[INFO] [stdout] test checker::tests::test_multiple_inputs_with_continue_on_error ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "8d6dc5393f48ee23ab1d67bc7aecbe1592938a0d2f803a426ffaba4da319ceac", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8d6dc5393f48ee23ab1d67bc7aecbe1592938a0d2f803a426ffaba4da319ceac", kill_on_drop: false }`
[INFO] [stdout] 8d6dc5393f48ee23ab1d67bc7aecbe1592938a0d2f803a426ffaba4da319ceac