[INFO] fetching crate genovo 0.3.2... [INFO] testing genovo-0.3.2 against master#c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 for pr-146098-7 [INFO] extracting crate genovo 0.3.2 into /workspace/builds/worker-4-tc1/source [INFO] started tweaking crates.io crate genovo 0.3.2 [INFO] finished tweaking crates.io crate genovo 0.3.2 [INFO] tweaked toml for crates.io crate genovo 0.3.2 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate genovo 0.3.2 on toolchain c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate genovo 0.3.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded serde_repr v0.1.9 [INFO] [stderr] Downloaded twobit v0.1.1 [INFO] [stderr] Downloaded miniz_oxide v0.5.4 [INFO] [stderr] Downloaded pattern_partition_prediction v0.1.4 [INFO] [stderr] Downloaded tabfile v0.2.1 [INFO] [stderr] Downloaded mutexpect v0.2.7 [INFO] [stderr] Downloaded serde_derive v1.0.144 [INFO] [stderr] Downloaded anyhow v1.0.65 [INFO] [stderr] Downloaded bigdecimal v0.2.2 [INFO] [stderr] Downloaded flate2 v1.0.24 [INFO] [stderr] Downloaded csv v1.1.6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3dcf693bb6404565ae3cf4ea85d262b794430fbc8cfe1b0d4f4e2f53f30f88b4 [INFO] running `Command { std: "docker" "start" "-a" "3dcf693bb6404565ae3cf4ea85d262b794430fbc8cfe1b0d4f4e2f53f30f88b4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3dcf693bb6404565ae3cf4ea85d262b794430fbc8cfe1b0d4f4e2f53f30f88b4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3dcf693bb6404565ae3cf4ea85d262b794430fbc8cfe1b0d4f4e2f53f30f88b4", kill_on_drop: false }` [INFO] [stdout] 3dcf693bb6404565ae3cf4ea85d262b794430fbc8cfe1b0d4f4e2f53f30f88b4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e90ed41c9c8fc7e0e7fe881470af9fe6bb3ac1b533ac6f3f15535b30768085a6 [INFO] running `Command { std: "docker" "start" "-a" "e90ed41c9c8fc7e0e7fe881470af9fe6bb3ac1b533ac6f3f15535b30768085a6", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.43 [INFO] [stderr] Compiling unicode-ident v1.0.4 [INFO] [stderr] Compiling quote v1.0.21 [INFO] [stderr] Compiling syn v1.0.99 [INFO] [stderr] Compiling libc v0.2.132 [INFO] [stderr] Compiling serde_derive v1.0.144 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling serde v1.0.144 [INFO] [stderr] Compiling thiserror v1.0.35 [INFO] [stderr] Compiling ppv-lite86 v0.2.16 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling num-bigint v0.3.3 [INFO] [stderr] Compiling anyhow v1.0.65 [INFO] [stderr] Compiling tabfile v0.2.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling pattern_partition_prediction v0.1.4 [INFO] [stderr] Compiling miniz_oxide v0.5.4 [INFO] [stderr] Compiling ryu v1.0.11 [INFO] [stderr] Compiling twobit v0.1.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling flate2 v1.0.24 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling bigdecimal v0.2.2 [INFO] [stderr] Compiling thiserror-impl v1.0.35 [INFO] [stderr] Compiling serde_repr v0.1.9 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling mutexpect v0.2.7 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling genovo v0.3.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 19.22s [INFO] running `Command { std: "docker" "inspect" "e90ed41c9c8fc7e0e7fe881470af9fe6bb3ac1b533ac6f3f15535b30768085a6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e90ed41c9c8fc7e0e7fe881470af9fe6bb3ac1b533ac6f3f15535b30768085a6", kill_on_drop: false }` [INFO] [stdout] e90ed41c9c8fc7e0e7fe881470af9fe6bb3ac1b533ac6f3f15535b30768085a6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] bab77f45783cdc33c099c73397979bf84b7ac7e1f734f7e079f3c10e984309fb [INFO] running `Command { std: "docker" "start" "-a" "bab77f45783cdc33c099c73397979bf84b7ac7e1f734f7e079f3c10e984309fb", kill_on_drop: false }` [INFO] [stderr] Compiling genovo v0.3.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.62s [INFO] running `Command { std: "docker" "inspect" "bab77f45783cdc33c099c73397979bf84b7ac7e1f734f7e079f3c10e984309fb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bab77f45783cdc33c099c73397979bf84b7ac7e1f734f7e079f3c10e984309fb", kill_on_drop: false }` [INFO] [stdout] bab77f45783cdc33c099c73397979bf84b7ac7e1f734f7e079f3c10e984309fb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 009c8e3aecade422ed33fa2c0fb4be7cad4fe06b4aaf21b6f85db09641d83e07 [INFO] running `Command { std: "docker" "start" "-a" "009c8e3aecade422ed33fa2c0fb4be7cad4fe06b4aaf21b6f85db09641d83e07", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/genovo-fa2cefd0d11d5523) [INFO] [stdout] [INFO] [stdout] running 8 tests [INFO] [stdout] test counts::tests::test_conf_interval ... ok [INFO] [stdout] test counts::tests::test_p_values ... ok [INFO] [stdout] test transform::tests::test_gff3_io ... ok [INFO] [stdout] test transform::tests::test_region_file_io ... ok [INFO] [stdout] test sample::tests::test_sampled_mutations_io ... ok [INFO] [stdout] test observed::tests::test_observed_mutations_io ... ok [INFO] [stdout] test expect::tests::test_expected_mutations_io ... ok [INFO] [stdout] test enumerate::tests::test_possible_mutations_io ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "009c8e3aecade422ed33fa2c0fb4be7cad4fe06b4aaf21b6f85db09641d83e07", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "009c8e3aecade422ed33fa2c0fb4be7cad4fe06b4aaf21b6f85db09641d83e07", kill_on_drop: false }` [INFO] [stdout] 009c8e3aecade422ed33fa2c0fb4be7cad4fe06b4aaf21b6f85db09641d83e07