[INFO] fetching crate d4-hts 0.3.9... [INFO] testing d4-hts-0.3.9 against master#c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 for pr-146098-7 [INFO] extracting crate d4-hts 0.3.9 into /workspace/builds/worker-3-tc1/source [INFO] started tweaking crates.io crate d4-hts 0.3.9 [INFO] finished tweaking crates.io crate d4-hts 0.3.9 [INFO] tweaked toml for crates.io crate d4-hts 0.3.9 written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate d4-hts 0.3.9 on toolchain c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 45 packages to latest compatible versions [INFO] [stderr] Adding bindgen v0.55.1 (available: v0.72.1) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded libloading v0.8.9 [INFO] [stderr] Downloaded shlex v0.1.1 [INFO] [stderr] Downloaded which v3.1.1 [INFO] [stderr] Downloaded cexpr v0.4.0 [INFO] [stderr] Downloaded nom v5.1.3 [INFO] [stderr] Downloaded bindgen v0.55.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a82438bfbf0287a124825a7389f7176ec9a0cef123de82fab5c3565fea68d023 [INFO] running `Command { std: "docker" "start" "-a" "a82438bfbf0287a124825a7389f7176ec9a0cef123de82fab5c3565fea68d023", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a82438bfbf0287a124825a7389f7176ec9a0cef123de82fab5c3565fea68d023", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a82438bfbf0287a124825a7389f7176ec9a0cef123de82fab5c3565fea68d023", kill_on_drop: false }` [INFO] [stdout] a82438bfbf0287a124825a7389f7176ec9a0cef123de82fab5c3565fea68d023 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0a70f3d65b235e7b8cb3f01404edcea880afecdeba5a6383d1b894b469108e1f [INFO] running `Command { std: "docker" "start" "-a" "0a70f3d65b235e7b8cb3f01404edcea880afecdeba5a6383d1b894b469108e1f", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.177 [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Compiling glob v0.3.3 [INFO] [stderr] Compiling proc-macro2 v1.0.103 [INFO] [stderr] Compiling unicode-width v0.1.14 [INFO] [stderr] Compiling quote v1.0.42 [INFO] [stderr] Compiling cfg-if v1.0.4 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling nom v5.1.3 [INFO] [stderr] Compiling log v0.4.28 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling libloading v0.8.9 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling regex-automata v0.4.13 [INFO] [stderr] Compiling regex v1.12.2 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling d4-hts v0.3.9 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.3.9 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-13022ed61d433b44/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-312ea988af480537/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-312ea988af480537/out/htslib [INFO] [stderr] + git clone -b 1.11 http://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'http://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] [INFO] [stderr] thread 'main' (583) panicked at build.rs:34:5: [INFO] [stderr] assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success() [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5ab1751a0eb2 - std::backtrace_rs::backtrace::libunwind::trace::ha50a1f28c7a10cf8 [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x5ab1751a0eb2 - std::backtrace_rs::backtrace::trace_unsynchronized::h34f8c4ec82a320bc [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x5ab1751a0eb2 - std::sys::backtrace::_print_fmt::h2d23e84e13d343bc [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x5ab1751a0eb2 - ::fmt::hde21067283f7e82e [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x5ab1751b1dff - core::fmt::rt::Argument::fmt::he65307037dca33c6 [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x5ab1751b1dff - core::fmt::write::h24186904251c31cb [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/core/src/fmt/mod.rs:1469:25 [INFO] [stderr] 6: 0x5ab1751723b3 - std::io::default_write_fmt::hdc5d19b6df666f61 [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x5ab1751723b3 - std::io::Write::write_fmt::h3ab9f1f4d8d19b72 [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x5ab17517d022 - std::sys::backtrace::BacktraceLock::print::he038489aba5894a6 [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x5ab17517fd7f - std::panicking::default_hook::{{closure}}::h80a26d916c49679b [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x5ab17517fbd9 - std::panicking::default_hook::he2e9efee79b3dce9 [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x5ab175180355 - std::panicking::panic_with_hook::hf5648b7cec6bc73e [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x5ab1751801b6 - std::panicking::panic_handler::{{closure}}::h1b2ed3864ba94359 [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:700:13 [INFO] [stderr] 13: 0x5ab17517d169 - std::sys::backtrace::__rust_end_short_backtrace::hd0186b2b27f5aaa7 [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x5ab175166b8d - __rustc[f7dae8b92efe1d7a]::rust_begin_unwind [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x5ab1751bbf10 - core::panicking::panic_fmt::hb5d6b83773432920 [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/core/src/panicking.rs:80:14 [INFO] [stderr] 16: 0x5ab1751bbeec - core::panicking::panic::h1fe63ac7a400263b [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/core/src/panicking.rs:150:5 [INFO] [stderr] 17: 0x5ab174cac174 - build_script_build::build_own_htslib::h66871064dac58041 [INFO] [stderr] 18: 0x5ab174caca81 - build_script_build::main::h3d0ea2b7e0b6b977 [INFO] [stderr] 19: 0x5ab174cadb43 - core::ops::function::FnOnce::call_once::h809ccd1e8ec56018 [INFO] [stderr] 20: 0x5ab174cad856 - std::sys::backtrace::__rust_begin_short_backtrace::hb9aead564ccb18cb [INFO] [stderr] 21: 0x5ab174cad839 - std::rt::lang_start::{{closure}}::h618fbbd6d42daf05 [INFO] [stderr] 22: 0x5ab175173fe0 - core::ops::function::impls:: for &F>::call_once::h8434f550918e723f [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 23: 0x5ab175173fe0 - std::panicking::catch_unwind::do_call::h7f7a838f33db43be [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:590:40 [INFO] [stderr] 24: 0x5ab175173fe0 - std::panicking::catch_unwind::hf345702047129f6d [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:553:19 [INFO] [stderr] 25: 0x5ab175173fe0 - std::panic::catch_unwind::h42f92c278294a3a0 [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panic.rs:359:14 [INFO] [stderr] 26: 0x5ab175173fe0 - std::rt::lang_start_internal::{{closure}}::ha6834eab5ce60f45 [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/rt.rs:175:24 [INFO] [stderr] 27: 0x5ab175173fe0 - std::panicking::catch_unwind::do_call::hf4afda32c60c9e55 [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:590:40 [INFO] [stderr] 28: 0x5ab175173fe0 - std::panicking::catch_unwind::hbfda5503aab4db1e [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:553:19 [INFO] [stderr] 29: 0x5ab175173fe0 - std::panic::catch_unwind::h1a1ed11560d244f4 [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panic.rs:359:14 [INFO] [stderr] 30: 0x5ab175173fe0 - std::rt::lang_start_internal::h1f713c0146d469ad [INFO] [stderr] at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/rt.rs:171:5 [INFO] [stderr] 31: 0x5ab174cad821 - std::rt::lang_start::h7ad24c0c1ffc67b1 [INFO] [stderr] 32: 0x5ab174cafdf5 - main [INFO] [stderr] 33: 0x7301315811ca - [INFO] [stderr] 34: 0x73013158128b - __libc_start_main [INFO] [stderr] 35: 0x5ab174caba15 - _start [INFO] [stderr] 36: 0x0 - [INFO] running `Command { std: "docker" "inspect" "0a70f3d65b235e7b8cb3f01404edcea880afecdeba5a6383d1b894b469108e1f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0a70f3d65b235e7b8cb3f01404edcea880afecdeba5a6383d1b894b469108e1f", kill_on_drop: false }` [INFO] [stdout] 0a70f3d65b235e7b8cb3f01404edcea880afecdeba5a6383d1b894b469108e1f