[INFO] fetching crate convert_genome 0.1.0... [INFO] testing convert_genome-0.1.0 against master#c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 for pr-146098-7 [INFO] extracting crate convert_genome 0.1.0 into /workspace/builds/worker-5-tc1/source [INFO] removed /workspace/builds/worker-5-tc1/source/rust-toolchain.toml [INFO] started tweaking crates.io crate convert_genome 0.1.0 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate convert_genome 0.1.0 [INFO] tweaked toml for crates.io crate convert_genome 0.1.0 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate convert_genome 0.1.0 on toolchain c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate convert_genome 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded lru v0.16.2 [INFO] [stderr] Downloaded noodles v0.101.0 [INFO] [stderr] Downloaded noodles-core v0.18.0 [INFO] [stderr] Downloaded grep v0.4.1 [INFO] [stderr] Downloaded noodles-tabix v0.57.0 [INFO] [stderr] Downloaded noodles-fasta v0.56.0 [INFO] [stderr] Downloaded grep-cli v0.1.12 [INFO] [stderr] Downloaded grep-searcher v0.1.16 [INFO] [stderr] Downloaded noodles-bcf v0.78.0 [INFO] [stderr] Downloaded curl v0.4.49 [INFO] [stderr] Downloaded noodles-vcf v0.81.0 [INFO] [stderr] Downloaded grep-printer v0.3.1 [INFO] [stderr] Downloaded grep-regex v0.1.14 [INFO] [stderr] Downloaded grep-matcher v0.1.8 [INFO] [stderr] Downloaded noodles-bgzf v0.43.0 [INFO] [stderr] Downloaded noodles-csi v0.51.0 [INFO] [stderr] Downloaded curl-sys v0.4.83+curl-8.15.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f7feedcfd392fd2d5fbadfbf31c85b584dbb7c89d10f24b50f9f1571269e86ee [INFO] running `Command { std: "docker" "start" "-a" "f7feedcfd392fd2d5fbadfbf31c85b584dbb7c89d10f24b50f9f1571269e86ee", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f7feedcfd392fd2d5fbadfbf31c85b584dbb7c89d10f24b50f9f1571269e86ee", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f7feedcfd392fd2d5fbadfbf31c85b584dbb7c89d10f24b50f9f1571269e86ee", kill_on_drop: false }` [INFO] [stdout] f7feedcfd392fd2d5fbadfbf31c85b584dbb7c89d10f24b50f9f1571269e86ee [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 20cc21f949ef6a4d93c55294c4676ba2263900891cdb56cd645ff0f635b81a56 [INFO] running `Command { std: "docker" "start" "-a" "20cc21f949ef6a4d93c55294c4676ba2263900891cdb56cd645ff0f635b81a56", kill_on_drop: false }` [INFO] [stderr] Compiling stable_deref_trait v1.2.1 [INFO] [stderr] Compiling simd-adler32 v0.3.7 [INFO] [stderr] Compiling zlib-rs v0.5.2 [INFO] [stderr] Compiling cc v1.2.43 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling foldhash v0.2.0 [INFO] [stderr] Compiling bstr v1.12.1 [INFO] [stderr] Compiling syn v2.0.108 [INFO] [stderr] Compiling encoding_rs v0.8.35 [INFO] [stderr] Compiling grep-matcher v0.1.8 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling memmap2 v0.9.9 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling ryu v1.0.20 [INFO] [stderr] Compiling regex-automata v0.4.13 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling hashbrown v0.16.0 [INFO] [stderr] Compiling serde_json v1.0.145 [INFO] [stderr] Compiling curl v0.4.49 [INFO] [stderr] Compiling time-macros v0.2.24 [INFO] [stderr] Compiling lock_api v0.4.14 [INFO] [stderr] Compiling zopfli v0.8.2 [INFO] [stderr] Compiling indexmap v2.12.0 [INFO] [stderr] Compiling parking_lot_core v0.9.12 [INFO] [stderr] Compiling form_urlencoded v1.2.2 [INFO] [stderr] Compiling socket2 v0.6.1 [INFO] [stderr] Compiling tempfile v3.23.0 [INFO] [stderr] Compiling parking_lot v0.12.5 [INFO] [stderr] Compiling lru v0.16.2 [INFO] [stderr] Compiling noodles-core v0.18.0 [INFO] [stderr] Compiling openssl-sys v0.9.110 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Compiling curl-sys v0.4.83+curl-8.15.0 [INFO] [stderr] Compiling time v0.3.44 [INFO] [stderr] Compiling encoding_rs_io v0.1.7 [INFO] [stderr] Compiling matchers v0.2.0 [INFO] [stderr] Compiling libz-rs-sys v0.5.2 [INFO] [stderr] Compiling flate2 v1.1.5 [INFO] [stderr] Compiling noodles-bgzf v0.43.0 [INFO] [stderr] Compiling zip v6.0.0 [INFO] [stderr] Compiling noodles-csi v0.51.0 [INFO] [stderr] Compiling noodles-fasta v0.56.0 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling noodles-tabix v0.57.0 [INFO] [stderr] Compiling globset v0.4.18 [INFO] [stderr] Compiling grep-searcher v0.1.16 [INFO] [stderr] Compiling grep-regex v0.1.14 [INFO] [stderr] Compiling noodles-vcf v0.81.0 [INFO] [stderr] Compiling zerovec-derive v0.11.1 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling tracing-attributes v0.1.30 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling clap_derive v4.5.49 [INFO] [stderr] Compiling thiserror-impl v2.0.17 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.0 [INFO] [stderr] Compiling grep-printer v0.3.1 [INFO] [stderr] Compiling grep-cli v0.1.12 [INFO] [stderr] Compiling thiserror v2.0.17 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling grep v0.4.1 [INFO] [stderr] Compiling yoke v0.8.0 [INFO] [stderr] Compiling convert_genome v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling tracing v0.1.41 [INFO] [stderr] Compiling zerotrie v0.2.2 [INFO] [stderr] Compiling tracing-subscriber v0.3.20 [INFO] [stderr] Compiling zerovec v0.11.4 [INFO] [stderr] Compiling clap v4.5.50 [INFO] [stderr] Compiling noodles-bcf v0.78.0 [INFO] [stderr] warning: convert_genome@0.1.0: build stage: initialization [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check: running rustc [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: selected rustc executable: "/opt/rustwide/rustup-home/toolchains/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/bin/rustc" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: HOST environment: "x86_64-unknown-linux-gnu" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: TARGET environment: "x86_64-unknown-linux-gnu" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: cfg target arch: "x86_64" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: build context arch/os: x86_64 / linux [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check: preparing rustc command [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: command preview: "/opt/rustwide/rustup-home/toolchains/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/bin/rustc" "--edition" "2021" "-D" "unused_variables" "-D" "dead_code" "-D" "unused_imports" "--crate-type" "bin" "--error-format" "human" "-o" "/opt/rustwide/target/debug/build/convert_genome-684b0586727c7e0d/out/build_lint_check" "-L" "dependency=/opt/rustwide/target/debug/deps" "--extern" "grep=/opt/rustwide/target/debug/deps/libgrep-ceca1707ed7367e2.rlib" "--extern" "walkdir=/opt/rustwide/target/debug/deps/libwalkdir-1a00c768f8c7f3de.rlib" "/opt/rustwide/workdir/build.rs" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: current dir before spawn: "/opt/rustwide/workdir" [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check: invoking rustc [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: calling Command::output() for rustc self-lint [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check: rustc invocation returned [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: rustc exit status: Some(0) [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: rustc stdout bytes: 0 / stderr bytes: 0 [INFO] [stderr] warning: convert_genome@0.1.0: build detail: Completed rustc self-lint for build.rs [INFO] [stderr] warning: convert_genome@0.1.0: build stage: scan underscore-prefixed bindings [INFO] [stderr] warning: convert_genome@0.1.0: build detail: underscore scan identified 0 violation groups [INFO] [stderr] warning: convert_genome@0.1.0: build stage: scan forbidden comment patterns [INFO] [stderr] warning: convert_genome@0.1.0: build detail: forbidden comment scan identified 0 violation groups [INFO] [stderr] warning: convert_genome@0.1.0: build stage: scan allow(dead_code) attributes [INFO] [stderr] warning: convert_genome@0.1.0: build detail: allow(dead_code) scan identified 0 violation groups [INFO] [stderr] warning: convert_genome@0.1.0: build stage: scan #[ignore] test annotations [INFO] [stderr] warning: convert_genome@0.1.0: build detail: ignored test scan identified 0 violation groups [INFO] [stderr] warning: convert_genome@0.1.0: build stage: build script completed [INFO] [stderr] warning: convert_genome@0.1.0: build detail: Validation checks completed without errors [INFO] [stderr] Compiling tinystr v0.8.1 [INFO] [stderr] Compiling potential_utf v0.1.3 [INFO] [stderr] Compiling icu_collections v2.0.0 [INFO] [stderr] Compiling icu_locale_core v2.0.0 [INFO] [stderr] Compiling noodles v0.101.0 [INFO] [stderr] Compiling icu_provider v2.0.0 [INFO] [stderr] Compiling icu_properties v2.0.1 [INFO] [stderr] Compiling icu_normalizer v2.0.0 [INFO] [stderr] Compiling idna_adapter v1.2.1 [INFO] [stderr] Compiling idna v1.1.0 [INFO] [stderr] Compiling url v2.5.7 [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 41.41s [INFO] running `Command { std: "docker" "inspect" "20cc21f949ef6a4d93c55294c4676ba2263900891cdb56cd645ff0f635b81a56", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "20cc21f949ef6a4d93c55294c4676ba2263900891cdb56cd645ff0f635b81a56", kill_on_drop: false }` [INFO] [stdout] 20cc21f949ef6a4d93c55294c4676ba2263900891cdb56cd645ff0f635b81a56 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0b87e38682829b78c91cd6e18fda028a80fabd6155db878a4aeddce8a43e2116 [INFO] running `Command { std: "docker" "start" "-a" "0b87e38682829b78c91cd6e18fda028a80fabd6155db878a4aeddce8a43e2116", kill_on_drop: false }` [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Compiling zerocopy-derive v0.8.27 [INFO] [stderr] Compiling serde_json v1.0.145 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling doc-comment v0.3.4 [INFO] [stderr] Compiling predicates-core v1.0.9 [INFO] [stderr] Compiling wait-timeout v0.2.1 [INFO] [stderr] Compiling difflib v0.4.0 [INFO] [stderr] Compiling termtree v0.5.1 [INFO] [stderr] Compiling assert_cmd v2.0.17 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling criterion-plot v0.6.0 [INFO] [stderr] Compiling unarray v0.1.4 [INFO] [stderr] Compiling yansi v1.0.1 [INFO] [stderr] Compiling tempfile v3.23.0 [INFO] [stderr] Compiling rand_core v0.9.3 [INFO] [stderr] Compiling predicates-tree v1.0.12 [INFO] [stderr] Compiling predicates v3.1.3 [INFO] [stderr] Compiling rusty-fork v0.3.1 [INFO] [stderr] Compiling pretty_assertions v1.4.1 [INFO] [stderr] Compiling rand v0.9.2 [INFO] [stderr] Compiling rand_xorshift v0.4.0 [INFO] [stderr] Compiling regex-automata v0.4.13 [INFO] [stderr] Compiling url v2.5.7 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling zerocopy v0.8.27 [INFO] [stderr] Compiling half v2.7.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling bstr v1.12.1 [INFO] [stderr] Compiling matchers v0.2.0 [INFO] [stderr] Compiling regex v1.12.2 [INFO] [stderr] Compiling tracing-subscriber v0.3.20 [INFO] [stderr] Compiling ciborium-ll v0.2.2 [INFO] [stderr] Compiling rand_chacha v0.9.0 [INFO] [stderr] Compiling ciborium v0.2.2 [INFO] [stderr] Compiling grep-searcher v0.1.16 [INFO] [stderr] Compiling globset v0.4.18 [INFO] [stderr] Compiling grep-regex v0.1.14 [INFO] [stderr] Compiling noodles-core v0.18.0 [INFO] [stderr] Compiling noodles-csi v0.51.0 [INFO] [stderr] Compiling noodles-fasta v0.56.0 [INFO] [stderr] Compiling grep-printer v0.3.1 [INFO] [stderr] Compiling grep-cli v0.1.12 [INFO] [stderr] Compiling criterion v0.7.0 [INFO] [stderr] Compiling proptest v1.9.0 [INFO] [stderr] Compiling ignore v0.4.24 [INFO] [stderr] Compiling noodles-tabix v0.57.0 [INFO] [stderr] Compiling grep v0.4.1 [INFO] [stderr] Compiling noodles-vcf v0.81.0 [INFO] [stderr] Compiling convert_genome v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling globwalk v0.9.1 [INFO] [stderr] Compiling assert_fs v1.1.3 [INFO] [stderr] Compiling noodles-bcf v0.78.0 [INFO] [stderr] warning: convert_genome@0.1.0: build stage: initialization [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check: running rustc [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: selected rustc executable: "/opt/rustwide/rustup-home/toolchains/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/bin/rustc" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: HOST environment: "x86_64-unknown-linux-gnu" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: TARGET environment: "x86_64-unknown-linux-gnu" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: cfg target arch: "x86_64" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: build context arch/os: x86_64 / linux [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check: preparing rustc command [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: command preview: "/opt/rustwide/rustup-home/toolchains/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/bin/rustc" "--edition" "2021" "-D" "unused_variables" "-D" "dead_code" "-D" "unused_imports" "--crate-type" "bin" "--error-format" "human" "-o" "/opt/rustwide/target/debug/build/convert_genome-eddd55ec68bfe722/out/build_lint_check" "-L" "dependency=/opt/rustwide/target/debug/deps" "--extern" "grep=/opt/rustwide/target/debug/deps/libgrep-363fe2a53a399de9.rlib" "--extern" "walkdir=/opt/rustwide/target/debug/deps/libwalkdir-1a00c768f8c7f3de.rlib" "/opt/rustwide/workdir/build.rs" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: current dir before spawn: "/opt/rustwide/workdir" [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check: invoking rustc [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: calling Command::output() for rustc self-lint [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check: rustc invocation returned [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: rustc exit status: Some(0) [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: rustc stdout bytes: 0 / stderr bytes: 0 [INFO] [stderr] warning: convert_genome@0.1.0: build detail: Completed rustc self-lint for build.rs [INFO] [stderr] warning: convert_genome@0.1.0: build stage: scan underscore-prefixed bindings [INFO] [stderr] warning: convert_genome@0.1.0: build detail: underscore scan identified 0 violation groups [INFO] [stderr] warning: convert_genome@0.1.0: build stage: scan forbidden comment patterns [INFO] [stderr] warning: convert_genome@0.1.0: build detail: forbidden comment scan identified 0 violation groups [INFO] [stderr] warning: convert_genome@0.1.0: build stage: scan allow(dead_code) attributes [INFO] [stderr] warning: convert_genome@0.1.0: build detail: allow(dead_code) scan identified 0 violation groups [INFO] [stderr] warning: convert_genome@0.1.0: build stage: scan #[ignore] test annotations [INFO] [stderr] warning: convert_genome@0.1.0: build detail: ignored test scan identified 0 violation groups [INFO] [stderr] warning: convert_genome@0.1.0: build stage: build script completed [INFO] [stderr] warning: convert_genome@0.1.0: build detail: Validation checks completed without errors [INFO] [stderr] Compiling noodles v0.101.0 [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 28.80s [INFO] running `Command { std: "docker" "inspect" "0b87e38682829b78c91cd6e18fda028a80fabd6155db878a4aeddce8a43e2116", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0b87e38682829b78c91cd6e18fda028a80fabd6155db878a4aeddce8a43e2116", kill_on_drop: false }` [INFO] [stdout] 0b87e38682829b78c91cd6e18fda028a80fabd6155db878a4aeddce8a43e2116 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] cdd75559825e05ee6e1943b10a94b6928e96df8d9298ea8611c0a8c8a79f6880 [INFO] running `Command { std: "docker" "start" "-a" "cdd75559825e05ee6e1943b10a94b6928e96df8d9298ea8611c0a8c8a79f6880", kill_on_drop: false }` [INFO] [stderr] warning: convert_genome@0.1.0: build stage: initialization [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check: running rustc [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: selected rustc executable: "/opt/rustwide/rustup-home/toolchains/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/bin/rustc" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: HOST environment: "x86_64-unknown-linux-gnu" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: TARGET environment: "x86_64-unknown-linux-gnu" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: cfg target arch: "x86_64" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: build context arch/os: x86_64 / linux [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check: preparing rustc command [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: command preview: "/opt/rustwide/rustup-home/toolchains/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/bin/rustc" "--edition" "2021" "-D" "unused_variables" "-D" "dead_code" "-D" "unused_imports" "--crate-type" "bin" "--error-format" "human" "-o" "/opt/rustwide/target/debug/build/convert_genome-eddd55ec68bfe722/out/build_lint_check" "-L" "dependency=/opt/rustwide/target/debug/deps" "--extern" "grep=/opt/rustwide/target/debug/deps/libgrep-363fe2a53a399de9.rlib" "--extern" "walkdir=/opt/rustwide/target/debug/deps/libwalkdir-1a00c768f8c7f3de.rlib" "/opt/rustwide/workdir/build.rs" [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: current dir before spawn: "/opt/rustwide/workdir" [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check: invoking rustc [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: calling Command::output() for rustc self-lint [INFO] [stderr] warning: convert_genome@0.1.0: build stage: manual lint self-check: rustc invocation returned [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: rustc exit status: Some(0) [INFO] [stderr] warning: convert_genome@0.1.0: build detail: manual lint self-check: rustc stdout bytes: 0 / stderr bytes: 0 [INFO] [stderr] warning: convert_genome@0.1.0: build detail: Completed rustc self-lint for build.rs [INFO] [stderr] warning: convert_genome@0.1.0: build stage: scan underscore-prefixed bindings [INFO] [stderr] warning: convert_genome@0.1.0: build detail: underscore scan identified 0 violation groups [INFO] [stderr] warning: convert_genome@0.1.0: build stage: scan forbidden comment patterns [INFO] [stderr] warning: convert_genome@0.1.0: build detail: forbidden comment scan identified 0 violation groups [INFO] [stderr] warning: convert_genome@0.1.0: build stage: scan allow(dead_code) attributes [INFO] [stderr] warning: convert_genome@0.1.0: build detail: allow(dead_code) scan identified 0 violation groups [INFO] [stderr] warning: convert_genome@0.1.0: build stage: scan #[ignore] test annotations [INFO] [stderr] warning: convert_genome@0.1.0: build detail: ignored test scan identified 0 violation groups [INFO] [stderr] warning: convert_genome@0.1.0: build stage: build script completed [INFO] [stderr] warning: convert_genome@0.1.0: build detail: Validation checks completed without errors [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.53s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/convert_genome-01c2ef03bc064183) [INFO] [stdout] [INFO] [stdout] running 9 tests [INFO] [stdout] test conversion::tests::format_genotype_strings ... ok [INFO] [stdout] test conversion::tests::genotype_parsing ... ok [INFO] [stdout] test dtc::tests::reader_skips_comments ... ok [INFO] [stdout] test dtc::tests::parse_basic_record ... ok [INFO] [stdout] test conversion::tests::build_header_sets_contigs_and_metadata ... ok [INFO] [stdout] test reference::tests::reference_fetches_base ... ok [INFO] [stdout] test remote::tests::decompresses_gzip_files ... ok [INFO] [stdout] test remote::tests::extracts_zip_archives ... ok [INFO] [stdout] test remote::tests::extracts_nested_compressed_files ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/convert_genome-f35cb7f2c056bf72) [INFO] [stderr] Running tests/integration_test.rs (/opt/rustwide/target/debug/deps/integration_test-66e99a2bcc1d118d) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test handles_empty_input ... ok [INFO] [stdout] test reports_unknown_chromosomes ... ok [INFO] [stdout] test reference_cache_populates ... ok [INFO] [stdout] test parallel_matches_single_thread ... ok [INFO] [stdout] test converts_to_vcf_and_bcf ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Running tests/proptest.rs (/opt/rustwide/target/debug/deps/proptest-dee707e9d3760df8) [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test genotype_parsing_round_trips ... ok [INFO] [stdout] test invalid_alleles_are_rejected ... ok [INFO] [stdout] test reader_handles_arbitrary_input ... ok [INFO] [stdout] test reference_lookup_returns_bases ... ok [INFO] [stdout] test concurrent_reference_access ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.69s [INFO] [stdout] [INFO] [stderr] Doc-tests convert_genome [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "cdd75559825e05ee6e1943b10a94b6928e96df8d9298ea8611c0a8c8a79f6880", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cdd75559825e05ee6e1943b10a94b6928e96df8d9298ea8611c0a8c8a79f6880", kill_on_drop: false }` [INFO] [stdout] cdd75559825e05ee6e1943b10a94b6928e96df8d9298ea8611c0a8c8a79f6880