[INFO] cloning repository https://github.com/zaeleus/noodles-count-features
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles-count-features" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c442ab2e6a09add90a3ddeb747cb82abb74d8cb1
[INFO] testing zaeleus/noodles-count-features against master#c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 for pr-146098-7
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/zaeleus/noodles-count-features
[INFO] finished tweaking git repo https://github.com/zaeleus/noodles-count-features
[INFO] tweaked toml for git repo https://github.com/zaeleus/noodles-count-features written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/zaeleus/noodles-count-features on toolchain c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/zaeleus/noodles-count-features already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded libdeflater v1.24.0
[INFO] [stderr]   Downloaded lexical-write-integer v1.0.5
[INFO] [stderr]   Downloaded noodles-core v0.18.0
[INFO] [stderr]   Downloaded git-testament-derive v0.2.1
[INFO] [stderr]   Downloaded mimalloc v0.1.47
[INFO] [stderr]   Downloaded noodles v0.101.0
[INFO] [stderr]   Downloaded git-testament v0.2.6
[INFO] [stderr]   Downloaded noodles-csi v0.51.0
[INFO] [stderr]   Downloaded noodles-gff v0.52.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.43.0
[INFO] [stderr]   Downloaded lexical-parse-integer v1.0.5
[INFO] [stderr]   Downloaded noodles-bam v0.83.0
[INFO] [stderr]   Downloaded lexical-util v1.0.6
[INFO] [stderr]   Downloaded noodles-sam v0.79.0
[INFO] [stderr]   Downloaded lexical-write-float v1.0.5
[INFO] [stderr]   Downloaded libmimalloc-sys v0.1.43
[INFO] [stderr]   Downloaded lexical-core v1.0.5
[INFO] [stderr]   Downloaded lexical-parse-float v1.0.5
[INFO] [stderr]   Downloaded libdeflate-sys v1.24.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a74f97f1f9c01a8caf4c42997ce5655e52c4e2d74fc128fd2240103394c566e4
[INFO] running `Command { std: "docker" "start" "-a" "a74f97f1f9c01a8caf4c42997ce5655e52c4e2d74fc128fd2240103394c566e4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a74f97f1f9c01a8caf4c42997ce5655e52c4e2d74fc128fd2240103394c566e4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a74f97f1f9c01a8caf4c42997ce5655e52c4e2d74fc128fd2240103394c566e4", kill_on_drop: false }`
[INFO] [stdout] a74f97f1f9c01a8caf4c42997ce5655e52c4e2d74fc128fd2240103394c566e4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ad8111027449e0644414e22119d674989246d675ce8a0b7eb72a1b64a5155658
[INFO] running `Command { std: "docker" "start" "-a" "ad8111027449e0644414e22119d674989246d675ce8a0b7eb72a1b64a5155658", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.2.34
[INFO] [stderr]    Compiling proc-macro2 v1.0.101
[INFO] [stderr]    Compiling cfg-if v1.0.3
[INFO] [stderr]    Compiling zlib-rs v0.5.1
[INFO] [stderr]    Compiling memchr v2.7.5
[INFO] [stderr]    Compiling hashbrown v0.15.5
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling num-conv v0.1.0
[INFO] [stderr]    Compiling lexical-util v1.0.6
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling powerfmt v0.2.0
[INFO] [stderr]    Compiling time-core v0.1.4
[INFO] [stderr]    Compiling libc v0.2.175
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling itoa v1.0.15
[INFO] [stderr]    Compiling bitflags v2.9.3
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling anstyle-query v1.1.4
[INFO] [stderr]    Compiling anstream v0.6.20
[INFO] [stderr]    Compiling anyhow v1.0.99
[INFO] [stderr]    Compiling log v0.4.27
[INFO] [stderr]    Compiling time-macros v0.2.22
[INFO] [stderr]    Compiling thiserror v2.0.16
[INFO] [stderr]    Compiling deranged v0.4.0
[INFO] [stderr]    Compiling tracing-log v0.2.0
[INFO] [stderr]    Compiling thread_local v1.1.9
[INFO] [stderr]    Compiling clap_builder v4.5.44
[INFO] [stderr]    Compiling lexical-write-integer v1.0.5
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.5
[INFO] [stderr]    Compiling tracing-subscriber v0.3.19
[INFO] [stderr]    Compiling rustc-hash v2.1.1
[INFO] [stderr]    Compiling bstr v1.12.0
[INFO] [stderr]    Compiling lexical-parse-float v1.0.5
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling indexmap v2.11.0
[INFO] [stderr]    Compiling lexical-write-float v1.0.5
[INFO] [stderr]    Compiling syn v2.0.106
[INFO] [stderr]    Compiling time v0.3.41
[INFO] [stderr]    Compiling noodles-core v0.18.0
[INFO] [stderr]    Compiling lexical-core v1.0.5
[INFO] [stderr]    Compiling libdeflate-sys v1.24.0
[INFO] [stderr]    Compiling libmimalloc-sys v0.1.43
[INFO] [stderr]    Compiling mimalloc v0.1.47
[INFO] [stderr]    Compiling thiserror-impl v2.0.16
[INFO] [stderr]    Compiling tracing-attributes v0.1.30
[INFO] [stderr]    Compiling clap_derive v4.5.45
[INFO] [stderr]    Compiling git-testament-derive v0.2.1
[INFO] [stderr]    Compiling libz-rs-sys v0.5.1
[INFO] [stderr]    Compiling flate2 v1.1.2
[INFO] [stderr]    Compiling tracing v0.1.41
[INFO] [stderr]    Compiling libdeflater v1.24.0
[INFO] [stderr]    Compiling noodles-bgzf v0.43.0
[INFO] [stderr]    Compiling git-testament v0.2.6
[INFO] [stderr]    Compiling noodles-csi v0.51.0
[INFO] [stderr]    Compiling noodles-sam v0.79.0
[INFO] [stderr]    Compiling noodles-gff v0.52.0
[INFO] [stderr]    Compiling clap v4.5.45
[INFO] [stderr]    Compiling noodles-bam v0.83.0
[INFO] [stderr]    Compiling noodles v0.101.0
[INFO] [stderr]    Compiling squab v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 32.31s
[INFO] running `Command { std: "docker" "inspect" "ad8111027449e0644414e22119d674989246d675ce8a0b7eb72a1b64a5155658", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ad8111027449e0644414e22119d674989246d675ce8a0b7eb72a1b64a5155658", kill_on_drop: false }`
[INFO] [stdout] ad8111027449e0644414e22119d674989246d675ce8a0b7eb72a1b64a5155658
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5972247d66ea7b9d24595a86921e37f53a9aa3f55fe8e6454367861f26482354
[INFO] running `Command { std: "docker" "start" "-a" "5972247d66ea7b9d24595a86921e37f53a9aa3f55fe8e6454367861f26482354", kill_on_drop: false }`
[INFO] [stderr]    Compiling squab v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 4.86s
[INFO] running `Command { std: "docker" "inspect" "5972247d66ea7b9d24595a86921e37f53a9aa3f55fe8e6454367861f26482354", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5972247d66ea7b9d24595a86921e37f53a9aa3f55fe8e6454367861f26482354", kill_on_drop: false }`
[INFO] [stdout] 5972247d66ea7b9d24595a86921e37f53a9aa3f55fe8e6454367861f26482354
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 47dc9944a95ab9c15a25558310cedec13903a6ed93be0d670c4b016abaafe7d9
[INFO] running `Command { std: "docker" "start" "-a" "47dc9944a95ab9c15a25558310cedec13903a6ed93be0d670c4b016abaafe7d9", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.20s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/squab-71748de274e04255)
[INFO] [stdout] 
[INFO] [stdout] running 33 tests
[INFO] [stdout] test collections::interval_tree::tests::test_find ... ok
[INFO] [stdout] test collections::interval_tree::tests::test_first_id_of_level ... ok
[INFO] [stdout] test collections::interval_tree::tests::test_left_child_id ... ok
[INFO] [stdout] test collections::interval_tree::tests::test_parent_id ... ok
[INFO] [stdout] test collections::interval_tree::tests::test_right_child_id ... ok
[INFO] [stdout] test collections::interval_tree::tests::test_root_id ... ok
[INFO] [stdout] test collections::interval_tree::tests::test_perfect_binary_tree_node_count ... ok
[INFO] [stdout] test commands::quantify::tests::test_strand_specification_from_option_or ... ok
[INFO] [stdout] test commands::normalize::tests::test_write_normalized_counts ... ok
[INFO] [stdout] test count::context::tests::test_add ... ok
[INFO] [stdout] test counts::tests::test_read_counts ... ok
[INFO] [stdout] test counts::tests::test_read_line ... ok
[INFO] [stdout] test feature::tests::test_reference_sequence_id ... ok
[INFO] [stdout] test feature::tests::test_end ... ok
[INFO] [stdout] test feature::tests::test_start ... ok
[INFO] [stdout] test feature::tests::test_strand ... ok
[INFO] [stdout] test match_intervals::tests::test_next ... ok
[INFO] [stdout] test normalization::fpkm::tests::test_normalize ... ok
[INFO] [stdout] test record_pairs::tests::test_is_mate ... ok
[INFO] [stdout] test tests::test_read_features ... ok
[INFO] [stdout] test normalization::tests::test_merge_features ... ok
[INFO] [stdout] test record_pairs::segment_position::tests::test_try_from_flag ... ok
[INFO] [stdout] test feature::tests::test_length ... ok
[INFO] [stdout] test gff::tests::test_is_gzip ... ok
[INFO] [stdout] test normalization::tests::test_sum_nonoverlapping_feature_lengths ... ok
[INFO] [stdout] test commands::quantify::tests::test_write_metadata ... ok
[INFO] [stdout] test normalization::tpm::tests::test_normalize ... ok
[INFO] [stdout] test collections::interval_tree::tests::test_index ... ok
[INFO] [stdout] test count::context::tests::test_add_event ... ok
[INFO] [stdout] test commands::quantify::tests::test_write_counts ... ok
[INFO] [stdout] test record_pairs::segment_position::tests::test_mate ... ok
[INFO] [stdout] test commands::tests::test_from_str ... ok
[INFO] [stdout] test match_intervals::tests::test_build_interval ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 33 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/squab-2cfe020d937e5a46)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/common.rs (/opt/rustwide/target/debug/deps/common-cc6fb27ea14b8554)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/quantify_paired_end_reverse_sample.rs (/opt/rustwide/target/debug/deps/quantify_paired_end_reverse_sample-df8203348d61c426)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test test_quantify_paired_end_reverse_sample ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/quantify_single_end_forward_test.rs (/opt/rustwide/target/debug/deps/quantify_single_end_forward_test-a5d0e9e588c3ea91)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stderr]    Doc-tests squab
[INFO] [stdout] test test_quantify_with_single_end_forward_sample ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "47dc9944a95ab9c15a25558310cedec13903a6ed93be0d670c4b016abaafe7d9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "47dc9944a95ab9c15a25558310cedec13903a6ed93be0d670c4b016abaafe7d9", kill_on_drop: false }`
[INFO] [stdout] 47dc9944a95ab9c15a25558310cedec13903a6ed93be0d670c4b016abaafe7d9