[INFO] cloning repository https://github.com/sheny-bio/bamqc [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sheny-bio/bamqc" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsheny-bio%2Fbamqc", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsheny-bio%2Fbamqc'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] d85d29f96340ec07060290923749225a8e6946af [INFO] testing sheny-bio/bamqc against master#c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 for pr-146098-7 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsheny-bio%2Fbamqc" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/sheny-bio/bamqc [INFO] finished tweaking git repo https://github.com/sheny-bio/bamqc [INFO] tweaked toml for git repo https://github.com/sheny-bio/bamqc written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/sheny-bio/bamqc on toolchain c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/sheny-bio/bamqc already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded noodles v0.101.0 [INFO] [stderr] Downloaded noodles-csi v0.51.0 [INFO] [stderr] Downloaded windows-link v0.2.0 [INFO] [stderr] Downloaded windows-targets v0.53.4 [INFO] [stderr] Downloaded noodles-core v0.18.0 [INFO] [stderr] Downloaded lexical-core v1.0.6 [INFO] [stderr] Downloaded noodles-tabix v0.57.0 [INFO] [stderr] Downloaded clap_derive v4.5.47 [INFO] [stderr] Downloaded clap v4.5.48 [INFO] [stderr] Downloaded noodles-bam v0.83.0 [INFO] [stderr] Downloaded noodles-sam v0.79.0 [INFO] [stderr] Downloaded lexical-write-float v1.0.6 [INFO] [stderr] Downloaded lexical-util v1.0.7 [INFO] [stderr] Downloaded lexical-parse-integer v1.0.6 [INFO] [stderr] Downloaded lexical-write-integer v1.0.6 [INFO] [stderr] Downloaded lexical-parse-float v1.0.6 [INFO] [stderr] Downloaded clap_builder v4.5.48 [INFO] [stderr] Downloaded noodles-bed v0.28.0 [INFO] [stderr] Downloaded noodles-bgzf v0.43.0 [INFO] [stderr] Downloaded bstr v1.12.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3d32a42b2a1996c011a53186b0dbdc28fad21aca4412123c4cea628e11bed4f6 [INFO] running `Command { std: "docker" "start" "-a" "3d32a42b2a1996c011a53186b0dbdc28fad21aca4412123c4cea628e11bed4f6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3d32a42b2a1996c011a53186b0dbdc28fad21aca4412123c4cea628e11bed4f6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3d32a42b2a1996c011a53186b0dbdc28fad21aca4412123c4cea628e11bed4f6", kill_on_drop: false }` [INFO] [stdout] 3d32a42b2a1996c011a53186b0dbdc28fad21aca4412123c4cea628e11bed4f6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7dc89530cc5fdc4100fbba676d98694f576c9c8da22fb53ef274b1eb56590876 [INFO] running `Command { std: "docker" "start" "-a" "7dc89530cc5fdc4100fbba676d98694f576c9c8da22fb53ef274b1eb56590876", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.101 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling unicode-ident v1.0.19 [INFO] [stderr] Compiling lexical-util v1.0.7 [INFO] [stderr] Compiling hashbrown v0.16.0 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling libz-rs-sys v0.5.2 [INFO] [stderr] Compiling bstr v1.12.0 [INFO] [stderr] Compiling tracing-core v0.1.34 [INFO] [stderr] Compiling thiserror v2.0.17 [INFO] [stderr] Compiling anstyle v1.0.11 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling clap_lex v0.7.5 [INFO] [stderr] Compiling regex-syntax v0.8.6 [INFO] [stderr] Compiling smallvec v1.15.1 [INFO] [stderr] Compiling nu-ansi-term v0.50.1 [INFO] [stderr] Compiling flate2 v1.1.2 [INFO] [stderr] Compiling anstream v0.6.20 [INFO] [stderr] Compiling tracing-log v0.2.0 [INFO] [stderr] Compiling clap_builder v4.5.48 [INFO] [stderr] Compiling lexical-parse-integer v1.0.6 [INFO] [stderr] Compiling lexical-write-integer v1.0.6 [INFO] [stderr] Compiling crossbeam-channel v0.5.15 [INFO] [stderr] Compiling noodles-core v0.18.0 [INFO] [stderr] Compiling lexical-parse-float v1.0.6 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling lexical-write-float v1.0.6 [INFO] [stderr] Compiling indexmap v2.11.4 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling noodles-bgzf v0.43.0 [INFO] [stderr] Compiling lexical-core v1.0.6 [INFO] [stderr] Compiling regex-automata v0.4.11 [INFO] [stderr] Compiling noodles-csi v0.51.0 [INFO] [stderr] Compiling noodles-sam v0.79.0 [INFO] [stderr] Compiling noodles-tabix v0.57.0 [INFO] [stderr] Compiling noodles-bed v0.28.0 [INFO] [stderr] Compiling noodles-bam v0.83.0 [INFO] [stderr] Compiling matchers v0.2.0 [INFO] [stderr] Compiling noodles v0.101.0 [INFO] [stderr] Compiling tracing-attributes v0.1.30 [INFO] [stderr] Compiling thiserror-impl v2.0.17 [INFO] [stderr] Compiling clap_derive v4.5.47 [INFO] [stderr] Compiling tracing v0.1.41 [INFO] [stderr] Compiling bamqc-io v0.1.0 (/opt/rustwide/workdir/crates/io) [INFO] [stderr] Compiling tracing-subscriber v0.3.20 [INFO] [stderr] Compiling clap v4.5.48 [INFO] [stderr] Compiling bamqc-core v0.1.0 (/opt/rustwide/workdir/crates/core) [INFO] [stderr] Compiling bamqc v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 29.04s [INFO] running `Command { std: "docker" "inspect" "7dc89530cc5fdc4100fbba676d98694f576c9c8da22fb53ef274b1eb56590876", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7dc89530cc5fdc4100fbba676d98694f576c9c8da22fb53ef274b1eb56590876", kill_on_drop: false }` [INFO] [stdout] 7dc89530cc5fdc4100fbba676d98694f576c9c8da22fb53ef274b1eb56590876 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a8ef20db99740ab9052d46048e8b7c7d988d595896149776cf0d35ffd6328eb8 [INFO] running `Command { std: "docker" "start" "-a" "a8ef20db99740ab9052d46048e8b7c7d988d595896149776cf0d35ffd6328eb8", kill_on_drop: false }` [INFO] [stderr] Compiling bamqc v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.58s [INFO] running `Command { std: "docker" "inspect" "a8ef20db99740ab9052d46048e8b7c7d988d595896149776cf0d35ffd6328eb8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a8ef20db99740ab9052d46048e8b7c7d988d595896149776cf0d35ffd6328eb8", kill_on_drop: false }` [INFO] [stdout] a8ef20db99740ab9052d46048e8b7c7d988d595896149776cf0d35ffd6328eb8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] b60ee56303af2e618d162384b1f963d30b51251341805f6c0c44cdeee83c907f [INFO] running `Command { std: "docker" "start" "-a" "b60ee56303af2e618d162384b1f963d30b51251341805f6c0c44cdeee83c907f", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.10s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/bamqc-b480b94c9f768393) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "b60ee56303af2e618d162384b1f963d30b51251341805f6c0c44cdeee83c907f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b60ee56303af2e618d162384b1f963d30b51251341805f6c0c44cdeee83c907f", kill_on_drop: false }` [INFO] [stdout] b60ee56303af2e618d162384b1f963d30b51251341805f6c0c44cdeee83c907f