[INFO] fetching crate yacrd 0.6.2...
[INFO] testing yacrd-0.6.2 against try#c2e32f1c9652b13ed99608599c1e855462f421f3 for pr-146098-7
[INFO] extracting crate yacrd 0.6.2 into /workspace/builds/worker-7-tc2/source
[INFO] started tweaking crates.io crate yacrd 0.6.2
[INFO] finished tweaking crates.io crate yacrd 0.6.2
[INFO] tweaked toml for crates.io crate yacrd 0.6.2 written to /workspace/builds/worker-7-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate yacrd 0.6.2 on toolchain c2e32f1c9652b13ed99608599c1e855462f421f3
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate yacrd 0.6.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5182fd26e89fd446bfe8976d71e9a74db5e25a2221910642811500f8ee93c973
[INFO] running `Command { std: "docker" "start" "-a" "5182fd26e89fd446bfe8976d71e9a74db5e25a2221910642811500f8ee93c973", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5182fd26e89fd446bfe8976d71e9a74db5e25a2221910642811500f8ee93c973", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5182fd26e89fd446bfe8976d71e9a74db5e25a2221910642811500f8ee93c973", kill_on_drop: false }`
[INFO] [stdout] 5182fd26e89fd446bfe8976d71e9a74db5e25a2221910642811500f8ee93c973
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8789ce2aaa9858c3228ed27ff7b787d4bfda043d5211d7c73f1728a7c514a855
[INFO] running `Command { std: "docker" "start" "-a" "8789ce2aaa9858c3228ed27ff7b787d4bfda043d5211d7c73f1728a7c514a855", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.18
[INFO] [stderr]    Compiling syn v1.0.34
[INFO] [stderr]    Compiling libc v0.2.72
[INFO] [stderr]    Compiling serde_derive v1.0.114
[INFO] [stderr]    Compiling serde v1.0.114
[INFO] [stderr]    Compiling cc v1.0.58
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling aho-corasick v0.7.13
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling hashbrown v0.8.1
[INFO] [stderr]    Compiling crc32fast v1.2.0
[INFO] [stderr]    Compiling regex-syntax v0.6.18
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling ppv-lite86 v0.2.8
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling indexmap v1.5.0
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling proc-macro-error-attr v0.4.12
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling proc-macro-error v0.4.12
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling adler v0.2.3
[INFO] [stderr]    Compiling log v0.4.11
[INFO] [stderr]    Compiling matrixmultiply v0.2.3
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling miniz_oxide v0.4.0
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling num-traits v0.1.43
[INFO] [stderr]    Compiling anyhow v1.0.31
[INFO] [stderr]    Compiling bio v0.31.0
[INFO] [stderr]    Compiling bit-vec v0.6.2
[INFO] [stderr]    Compiling itoa v0.4.6
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling fixedbitset v0.1.9
[INFO] [stderr]    Compiling ordermap v0.3.5
[INFO] [stderr]    Compiling either v1.5.3
[INFO] [stderr]    Compiling termcolor v1.1.0
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling enum_primitive v0.1.1
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling flate2 v1.0.16
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling petgraph v0.4.13
[INFO] [stderr]    Compiling ordered-float v1.1.0
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling xz2 v0.1.6
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling os_str_bytes v2.3.1
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling bzip2 v0.3.3
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]    Compiling syn-mid v0.5.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.20
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.1
[INFO] [stderr]    Compiling thiserror v1.0.20
[INFO] [stderr]    Compiling niffler v2.2.0
[INFO] [stderr]    Compiling snafu v0.6.8
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.13
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling bio-types v0.7.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling clap v3.0.0-beta.1
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling yacrd v0.6.2 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `self::fullmemory::*`
[INFO] [stdout]   --> src/reads2ovl/mod.rs:35:9
[INFO] [stdout]    |
[INFO] [stdout] 35 | pub use self::fullmemory::*;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 35.46s
[INFO] running `Command { std: "docker" "inspect" "8789ce2aaa9858c3228ed27ff7b787d4bfda043d5211d7c73f1728a7c514a855", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8789ce2aaa9858c3228ed27ff7b787d4bfda043d5211d7c73f1728a7c514a855", kill_on_drop: false }`
[INFO] [stdout] 8789ce2aaa9858c3228ed27ff7b787d4bfda043d5211d7c73f1728a7c514a855
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fda91a179031f248cf14200d354131bc6c33bd83257102cbd6d9b2eab7224336
[INFO] running `Command { std: "docker" "start" "-a" "fda91a179031f248cf14200d354131bc6c33bd83257102cbd6d9b2eab7224336", kill_on_drop: false }`
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling tempfile v3.1.0
[INFO] [stderr]    Compiling yacrd v0.6.2 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `self::fullmemory::*`
[INFO] [stdout]   --> src/reads2ovl/mod.rs:35:9
[INFO] [stdout]    |
[INFO] [stdout] 35 | pub use self::fullmemory::*;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 2.29s
[INFO] running `Command { std: "docker" "inspect" "fda91a179031f248cf14200d354131bc6c33bd83257102cbd6d9b2eab7224336", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fda91a179031f248cf14200d354131bc6c33bd83257102cbd6d9b2eab7224336", kill_on_drop: false }`
[INFO] [stdout] fda91a179031f248cf14200d354131bc6c33bd83257102cbd6d9b2eab7224336
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c2e32f1c9652b13ed99608599c1e855462f421f3" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 9c60246504808a0491000632fc2604ae488e4a5affb2a3f75abd410d10b34197
[INFO] running `Command { std: "docker" "start" "-a" "9c60246504808a0491000632fc2604ae488e4a5affb2a3f75abd410d10b34197", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `self::fullmemory::*`
[INFO] [stderr]   --> src/reads2ovl/mod.rs:35:9
[INFO] [stderr]    |
[INFO] [stderr] 35 | pub use self::fullmemory::*;
[INFO] [stderr]    |         ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `yacrd` (bin "yacrd" test) generated 1 warning (run `cargo fix --bin "yacrd" -p yacrd --tests` to apply 1 suggestion)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/yacrd-6cf29a8a5bf70499)
[INFO] [stdout] 
[INFO] [stdout] running 52 tests
[INFO] [stdout] test editor::extract::tests::fastq_file ... ok
[INFO] [stdout] test editor::extract::tests::fasta_file ... ok
[INFO] [stdout] test editor::extract::tests::paf_file ... ok
[INFO] [stdout] test editor::filter::tests::fastq_file ... ok
[INFO] [stdout] test editor::filter::tests::m4_file ... ok
[INFO] [stdout] test editor::filter::tests::paf_file ... ok
[INFO] [stdout] test editor::filter::tests::fasta_file ... ok
[INFO] [stdout] test editor::scrubbing::tests::fasta_keep_middle ... ok
[INFO] [stdout] test editor::scrubbing::tests::fastq_keep_begin_end ... ok
[INFO] [stdout] test editor::scrubbing::tests::fasta_keep_begin_end ... ok
[INFO] [stdout] test editor::scrubbing::tests::fastq_keep_middle ... ok
[INFO] [stdout] test editor::split::tests::fasta_file ... ok
[INFO] [stdout] test editor::extract::tests::m4_file ... ok
[INFO] [stdout] test stack::tests::coverage_upper_than_0 ... ok
[INFO] [stdout] test util::tests::file_type::fasta_with_nopoint ... ok
[INFO] [stdout] test util::tests::file_type::fa_with_nopoint ... ok
[INFO] [stdout] test util::tests::file_type::fasta_with_other_ext ... ok
[INFO] [stdout] test util::tests::file_type::fa_with_other_ext ... ok
[INFO] [stdout] test util::tests::file_type::fastq_with_other_ext ... ok
[INFO] [stdout] test util::tests::file_type::fastq_with_nopoint ... ok
[INFO] [stdout] test util::tests::file_type::fq_with_other_ext ... ok
[INFO] [stdout] test util::tests::file_type::fq ... ok
[INFO] [stdout] test util::tests::file_type::fasta ... ok
[INFO] [stdout] test util::tests::file_type::m4 ... ok
[INFO] [stdout] test editor::split::tests::fastq_file ... ok
[INFO] [stdout] test editor::tests::read_type_assignation ... ok
[INFO] [stdout] test util::tests::file_type::fq_with_nopoint ... ok
[INFO] [stdout] test stack::tests::from_overlap ... ok
[INFO] [stdout] test util::tests::file_type::m4_with_other_ext ... ok
[INFO] [stdout] test util::tests::file_type::mhap_with_other_ext ... ok
[INFO] [stdout] test util::tests::file_type::paf ... ok
[INFO] [stdout] test util::tests::file_type::yacrd_overlap_with_nopoint ... ok
[INFO] [stdout] test util::tests::str2u32::failed ... ok
[INFO] [stdout] test stack::tests::failled_correctly_on_corrupt_yacrd ... ok
[INFO] [stdout] test util::tests::file_type::yacrd_overlap ... ok
[INFO] [stdout] test util::tests::file_type::m4_with_nopoint ... ok
[INFO] [stdout] test util::tests::file_type::mhap ... ok
[INFO] [stdout] test stack::tests::from_report ... ok
[INFO] [stdout] test util::tests::file_type::paf_with_nopoint ... ok
[INFO] [stdout] test util::tests::file_type::paf_with_other_ext ... ok
[INFO] [stdout] test util::tests::str2u64::failed ... ok
[INFO] [stdout] test util::tests::file_type::fastq ... ok
[INFO] [stdout] test util::tests::str2usize::failed ... ok
[INFO] [stdout] test util::tests::str2usize::succeeded ... ok
[INFO] [stdout] test stack::tests::perfect_read_in_report ... ok
[INFO] [stdout] test util::tests::str2u64::succeeded ... ok
[INFO] [stdout] test util::tests::file_type::mhap_with_nopoint ... ok
[INFO] [stdout] test reads2ovl::tests::paf ... ok
[INFO] [stdout] test reads2ovl::tests::m4 ... ok
[INFO] [stdout] test util::tests::file_type::yacrd_overlap_with_other_ext ... ok
[INFO] [stdout] test util::tests::file_type::fa ... ok
[INFO] [stdout] test util::tests::str2u32::succeeded ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 52 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "9c60246504808a0491000632fc2604ae488e4a5affb2a3f75abd410d10b34197", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9c60246504808a0491000632fc2604ae488e4a5affb2a3f75abd410d10b34197", kill_on_drop: false }`
[INFO] [stdout] 9c60246504808a0491000632fc2604ae488e4a5affb2a3f75abd410d10b34197
