[INFO] fetching crate klassify 0.1.6...
[INFO] testing klassify-0.1.6 against master#c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 for pr-146098-7
[INFO] extracting crate klassify 0.1.6 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate klassify 0.1.6
[INFO] finished tweaking crates.io crate klassify 0.1.6
[INFO] tweaked toml for crates.io crate klassify 0.1.6 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate klassify 0.1.6 on toolchain c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate klassify 0.1.6 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded semver v0.1.20
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[INFO] [stderr]   Downloaded rust-htslib v0.39.5
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded env_logger v0.11.5
[INFO] [stderr]   Downloaded needletail v0.5.1
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[INFO] [stderr]   Downloaded buffer-redux v1.0.1
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded strum_macros v0.23.1
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded flume v0.10.14
[INFO] [stderr]   Downloaded libdeflater v0.7.5
[INFO] [stderr]   Downloaded bio v0.41.0
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[INFO] [stderr]   Downloaded clap_builder v4.5.11
[INFO] [stderr]   Downloaded curl-sys v0.4.74+curl-8.9.0
[INFO] [stderr]   Downloaded gzp v0.10.1
[INFO] [stderr]   Downloaded hts-sys v2.1.4
[INFO] [stderr]   Downloaded openssl-src v300.3.1+3.3.1
[INFO] [stderr]   Downloaded perbase v1.0.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b67db4e59a7e14a4452a0b66cc4702369f3124f2cdb3028a7aa039438bbb4eea
[INFO] running `Command { std: "docker" "start" "-a" "b67db4e59a7e14a4452a0b66cc4702369f3124f2cdb3028a7aa039438bbb4eea", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b67db4e59a7e14a4452a0b66cc4702369f3124f2cdb3028a7aa039438bbb4eea", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b67db4e59a7e14a4452a0b66cc4702369f3124f2cdb3028a7aa039438bbb4eea", kill_on_drop: false }`
[INFO] [stdout] b67db4e59a7e14a4452a0b66cc4702369f3124f2cdb3028a7aa039438bbb4eea
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 662c5c954de7584833d767c9e41d4b27cd1299facd0984db798d1289ef0f5862
[INFO] running `Command { std: "docker" "start" "-a" "662c5c954de7584833d767c9e41d4b27cd1299facd0984db798d1289ef0f5862", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
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[INFO] [stderr]    Compiling rand_chacha v0.3.1
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[INFO] [stderr]    Compiling url v2.5.2
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[INFO] [stderr]    Compiling rayon-core v1.12.1
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[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling bv v0.11.1
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[INFO] [stderr]    Compiling strum_macros v0.23.1
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[INFO] [stderr]    Compiling strum v0.23.0
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[INFO] [stderr]    Compiling clap_lex v0.7.2
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[INFO] [stderr]    Compiling clap_builder v4.5.11
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[INFO] [stderr]    Compiling clap_derive v4.5.11
[INFO] [stderr]    Compiling env_filter v0.1.2
[INFO] [stderr]    Compiling bio v0.41.0
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling flate2 v1.1.2
[INFO] [stderr]    Compiling rust-lapper v1.2.0
[INFO] [stderr]    Compiling buffer-redux v1.0.1
[INFO] [stderr]    Compiling gzp v0.10.1
[INFO] [stderr]    Compiling env_home v0.1.0
[INFO] [stderr]    Compiling lru_time_cache v0.11.11
[INFO] [stderr]    Compiling which v8.0.0
[INFO] [stderr]    Compiling needletail v0.5.1
[INFO] [stderr]    Compiling env_logger v0.11.5
[INFO] [stderr]    Compiling clap v4.5.11
[INFO] [stderr]    Compiling rust-htslib v0.39.5
[INFO] [stderr]    Compiling perbase v1.0.0
[INFO] [stderr]    Compiling klassify v0.1.6 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 6m 56s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "662c5c954de7584833d767c9e41d4b27cd1299facd0984db798d1289ef0f5862", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "662c5c954de7584833d767c9e41d4b27cd1299facd0984db798d1289ef0f5862", kill_on_drop: false }`
[INFO] [stdout] 662c5c954de7584833d767c9e41d4b27cd1299facd0984db798d1289ef0f5862
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6605b8f94da713626aec8886059ef7c2f06ed1a1f35271b9b8b45c561835d7eb
[INFO] running `Command { std: "docker" "start" "-a" "6605b8f94da713626aec8886059ef7c2f06ed1a1f35271b9b8b45c561835d7eb", kill_on_drop: false }`
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling which v8.0.0
[INFO] [stderr]    Compiling filetime v0.2.25
[INFO] [stderr]    Compiling tempfile v3.20.0
[INFO] [stderr]    Compiling klassify v0.1.6 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 12.53s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "6605b8f94da713626aec8886059ef7c2f06ed1a1f35271b9b8b45c561835d7eb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6605b8f94da713626aec8886059ef7c2f06ed1a1f35271b9b8b45c561835d7eb", kill_on_drop: false }`
[INFO] [stdout] 6605b8f94da713626aec8886059ef7c2f06ed1a1f35271b9b8b45c561835d7eb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 8296b4706ad448d7817ee27152822ddcf07825e3f61d4434571171c2d5927eec
[INFO] running `Command { std: "docker" "start" "-a" "8296b4706ad448d7817ee27152822ddcf07825e3f61d4434571171c2d5927eec", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.32s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/klassify-ab2bcf5e2dfd2d20)
[INFO] [stdout] 
[INFO] [stdout] running 18 tests
[INFO] [stdout] test breakpoint::tests::breakpoint_fail_at_end ... ok
[INFO] [stdout] test breakpoint::tests::breakpoint_not_enough_kmers ... ok
[INFO] [stdout] test tools::graph_matching::tests::test_greedy_basic ... ok
[INFO] [stdout] test build::tests::test_buildargs_parse_defaults ... ok
[INFO] [stdout] test cluster_pairs::tests::test_cluster_overlaps_basic ... ok
[INFO] [stdout] test build::tests::test_get_kmers_canonicalization ... ok
[INFO] [stdout] test utils::tests::need_update_false_when_up_to_date ... ok
[INFO] [stdout] test utils::tests::need_update_when_target_missing ... ok
[INFO] [stdout] test utils::tests::prefix_until_dot_truncates_correctly ... ok
[INFO] [stdout] test utils::tests::prefix_extracts_basename ... ok
[INFO] [stdout] test utils::tests::need_update_when_source_newer_than_target ... ok
[INFO] [stdout] test utils::tests::need_update_when_target_is_zero_bytes ... ok
[INFO] [stdout] test build::tests::test_build_finds_singletons_and_writes_bincode ... ok
[INFO] [stdout] test utils::tests::sh_failure_returns_false ... ok
[INFO] [stdout] test utils::tests::sh_success_returns_true ... ok
[INFO] [stdout] test cluster_pairs::tests::test_build_read_maps_and_pairs ... ok
[INFO] [stdout] test breakpoint::tests::breakpoint_orientation_ba ... ok
[INFO] [stdout] test breakpoint::tests::breakpoint_pref_suf_orientation_ab ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 18 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/klassify-ea733034ce00578e)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests klassify
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "8296b4706ad448d7817ee27152822ddcf07825e3f61d4434571171c2d5927eec", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8296b4706ad448d7817ee27152822ddcf07825e3f61d4434571171c2d5927eec", kill_on_drop: false }`
[INFO] [stdout] 8296b4706ad448d7817ee27152822ddcf07825e3f61d4434571171c2d5927eec
