[INFO] fetching crate fxtools 0.2.39...
[INFO] testing fxtools-0.2.39 against master#c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 for pr-146098-7
[INFO] extracting crate fxtools 0.2.39 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate fxtools 0.2.39
[INFO] finished tweaking crates.io crate fxtools 0.2.39
[INFO] tweaked toml for crates.io crate fxtools 0.2.39 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate fxtools 0.2.39 on toolchain c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate fxtools 0.2.39 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded colored v2.0.4
[INFO] [stderr]   Downloaded ndarray-stats v0.6.0
[INFO] [stderr]   Downloaded noisy_float v0.2.0
[INFO] [stderr]   Downloaded disambiseq v0.1.11
[INFO] [stderr]   Downloaded bitflags v2.3.3
[INFO] [stderr]   Downloaded foldhash v0.1.3
[INFO] [stderr]   Downloaded num-complex v0.4.3
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] [stderr]   Downloaded liblzma v0.3.4
[INFO] [stderr]   Downloaded bytes v1.4.0
[INFO] [stderr]   Downloaded pin-project v1.1.2
[INFO] [stderr]   Downloaded matrixmultiply v0.3.7
[INFO] [stderr]   Downloaded pin-project-internal v1.1.2
[INFO] [stderr]   Downloaded portable-atomic-util v0.2.2
[INFO] [stderr]   Downloaded rustix v0.38.4
[INFO] [stderr]   Downloaded niffler v2.6.0
[INFO] [stderr]   Downloaded fxread v0.2.13
[INFO] [stderr]   Downloaded core_affinity v0.8.0
[INFO] [stderr]   Downloaded thiserror-impl v1.0.44
[INFO] [stderr]   Downloaded thiserror v1.0.44
[INFO] [stderr]   Downloaded spinoff v0.8.0
[INFO] [stderr]   Downloaded linux-raw-sys v0.4.3
[INFO] [stderr]   Downloaded liblzma-sys v0.3.9
[INFO] [stderr]   Downloaded gzp v0.11.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] daafa2dd2e3d74f3a5a1afeadb52e49a316c280c11f4b6033430f418f5c1d12c
[INFO] running `Command { std: "docker" "start" "-a" "daafa2dd2e3d74f3a5a1afeadb52e49a316c280c11f4b6033430f418f5c1d12c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "daafa2dd2e3d74f3a5a1afeadb52e49a316c280c11f4b6033430f418f5c1d12c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "daafa2dd2e3d74f3a5a1afeadb52e49a316c280c11f4b6033430f418f5c1d12c", kill_on_drop: false }`
[INFO] [stdout] daafa2dd2e3d74f3a5a1afeadb52e49a316c280c11f4b6033430f418f5c1d12c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] caf2351b4bac763f531d9f4952543459457b82e12b00eab8d69e4b5e03f7746a
[INFO] running `Command { std: "docker" "start" "-a" "caf2351b4bac763f531d9f4952543459457b82e12b00eab8d69e4b5e03f7746a", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling thiserror v1.0.44
[INFO] [stderr]    Compiling zstd-safe v7.2.1
[INFO] [stderr]    Compiling allocator-api2 v0.2.18
[INFO] [stderr]    Compiling rustix v0.38.4
[INFO] [stderr]    Compiling bitflags v2.3.3
[INFO] [stderr]    Compiling serde v1.0.210
[INFO] [stderr]    Compiling miniz_oxide v0.8.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.7
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling getrandom v0.2.10
[INFO] [stderr]    Compiling linux-raw-sys v0.4.3
[INFO] [stderr]    Compiling futures-core v0.3.28
[INFO] [stderr]    Compiling anstyle-parse v0.2.3
[INFO] [stderr]    Compiling aho-corasick v1.1.1
[INFO] [stderr]    Compiling anstyle-query v1.0.2
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling colorchoice v1.0.0
[INFO] [stderr]    Compiling anstyle v1.0.8
[INFO] [stderr]    Compiling foldhash v0.1.3
[INFO] [stderr]    Compiling anyhow v1.0.89
[INFO] [stderr]    Compiling zerocopy v0.7.35
[INFO] [stderr]    Compiling paste v1.0.14
[INFO] [stderr]    Compiling anstream v0.6.13
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling nanorand v0.7.0
[INFO] [stderr]    Compiling cc v1.0.79
[INFO] [stderr]    Compiling hashbrown v0.15.0
[INFO] [stderr]    Compiling spin v0.9.8
[INFO] [stderr]    Compiling num-complex v0.4.3
[INFO] [stderr]    Compiling futures-sink v0.3.28
[INFO] [stderr]    Compiling serde_json v1.0.128
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling clap_builder v4.5.20
[INFO] [stderr]    Compiling flate2 v1.0.34
[INFO] [stderr]    Compiling regex-automata v0.4.8
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling core_affinity v0.8.0
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling noisy_float v0.2.0
[INFO] [stderr]    Compiling syn v2.0.72
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling bytes v1.4.0
[INFO] [stderr]    Compiling zstd-sys v2.0.13+zstd.1.5.6
[INFO] [stderr]    Compiling liblzma-sys v0.3.9
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling disambiseq v0.1.11
[INFO] [stderr]    Compiling is-terminal v0.4.9
[INFO] [stderr]    Compiling colored v2.0.4
[INFO] [stderr]    Compiling indexmap v2.6.0
[INFO] [stderr]    Compiling spinoff v0.8.0
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling liblzma v0.3.4
[INFO] [stderr]    Compiling bstr v1.10.0
[INFO] [stderr]    Compiling regex v1.11.0
[INFO] [stderr]    Compiling ndarray-stats v0.6.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.44
[INFO] [stderr]    Compiling pin-project-internal v1.1.2
[INFO] [stderr]    Compiling serde_derive v1.0.210
[INFO] [stderr]    Compiling clap_derive v4.5.18
[INFO] [stderr]    Compiling bgzip v0.3.1
[INFO] [stderr]    Compiling zstd v0.13.2
[INFO] [stderr]    Compiling pin-project v1.1.2
[INFO] [stderr]    Compiling flume v0.10.14
[INFO] [stderr]    Compiling niffler v2.6.0
[INFO] [stderr]    Compiling gzp v0.11.3
[INFO] [stderr]    Compiling clap v4.5.20
[INFO] [stderr]    Compiling fxread v0.2.13
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling fxtools v0.2.39 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 30.55s
[INFO] running `Command { std: "docker" "inspect" "caf2351b4bac763f531d9f4952543459457b82e12b00eab8d69e4b5e03f7746a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "caf2351b4bac763f531d9f4952543459457b82e12b00eab8d69e4b5e03f7746a", kill_on_drop: false }`
[INFO] [stdout] caf2351b4bac763f531d9f4952543459457b82e12b00eab8d69e4b5e03f7746a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4210527f835a70e751de56b23485e5d6462c9bd3d0142352aa7bd04b7b43cce4
[INFO] running `Command { std: "docker" "start" "-a" "4210527f835a70e751de56b23485e5d6462c9bd3d0142352aa7bd04b7b43cce4", kill_on_drop: false }`
[INFO] [stderr]    Compiling fxtools v0.2.39 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 3.07s
[INFO] running `Command { std: "docker" "inspect" "4210527f835a70e751de56b23485e5d6462c9bd3d0142352aa7bd04b7b43cce4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4210527f835a70e751de56b23485e5d6462c9bd3d0142352aa7bd04b7b43cce4", kill_on_drop: false }`
[INFO] [stdout] 4210527f835a70e751de56b23485e5d6462c9bd3d0142352aa7bd04b7b43cce4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] c7bc7b8d005fd0470d8e95e8bba832e3044361bc8673637b733aa037d39d448c
[INFO] running `Command { std: "docker" "start" "-a" "c7bc7b8d005fd0470d8e95e8bba832e3044361bc8673637b733aa037d39d448c", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.21s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/fxtools-a12e4cb35773ce51)
[INFO] [stdout] 
[INFO] [stdout] running 63 tests
[INFO] [stdout] test commands::clip::test::fasta_clip_range_both ... ok
[INFO] [stdout] test commands::clip::test::fasta_clip_left ... ok
[INFO] [stdout] test commands::clip::test::fasta_clip_right ... ok
[INFO] [stdout] test commands::clip::test::fasta_clip_range_left ... ok
[INFO] [stdout] test commands::clip::test::fasta_clip_range_right ... ok
[INFO] [stdout] test commands::clip::test::fasta_no_clip ... ok
[INFO] [stdout] test commands::clip::test::test_parse_range ... ok
[INFO] [stdout] test commands::count::test::test_count_fasta ... ok
[INFO] [stdout] test commands::clip::test::fastq_clip_range_left ... ok
[INFO] [stdout] test commands::extract::testing::test_border ... ok
[INFO] [stdout] test commands::extract::testing::test_contiguous ... ok
[INFO] [stdout] test commands::extract::testing::test_high_entropy_positions ... ok
[INFO] [stdout] test commands::extract::testing::test_position_frequency ... ok
[INFO] [stdout] test commands::extract::testing::test_longest_contiguous ... ok
[INFO] [stdout] test commands::extract::testing::test_positional_entropy_high ... ok
[INFO] [stdout] test commands::extract::testing::test_position_counts ... ok
[INFO] [stdout] test commands::clip::test::fastq_clip_range_both ... ok
[INFO] [stdout] test commands::filter::test::test_fasta_header ... ok
[INFO] [stdout] test commands::filter::test::test_fastq_header_inverse ... ok
[INFO] [stdout] test commands::filter::test::test_fasta_header_inverse ... ok
[INFO] [stdout] test commands::filter::test::test_fasta_sequence_inverse ... ok
[INFO] [stdout] test commands::filter::test::test_fastq_sequence_inverse ... ok
[INFO] [stdout] test commands::filter::test::test_fastq_header ... ok
[INFO] [stdout] test commands::extract::testing::test_positional_entropy_none ... ok
[INFO] [stdout] test commands::filter::test::test_fastq_sequence ... ok
[INFO] [stdout] test commands::fix::test::run_fasta ... ok
[INFO] [stdout] test commands::fix::test::run_fasta_nochange ... ok
[INFO] [stdout] test commands::fix::test::run_fastq_nochange ... ok
[INFO] [stdout] test commands::fix::test::run_fastq ... ok
[INFO] [stdout] test commands::fix::test::run_invalid_fasta_allow_invalid ... ok
[INFO] [stdout] test commands::fix::test::run_invalid_fastq_allow_invalid ... ok
[INFO] [stdout] test commands::filter::test::test_fasta_sequence ... ok
[INFO] [stdout] test commands::sgrna_table::test::table_fasta ... ok
[INFO] [stdout] test commands::sgrna_table::test::table_fastq ... ok
[INFO] [stdout] test commands::extract::testing::test_base_map ... ok
[INFO] [stdout] test commands::sort::testing::sort_paired_fasta_by_r2 ... ok
[INFO] [stdout] test commands::reverse::test::run_fastq ... ok
[INFO] [stdout] test commands::reverse::test::run_fasta ... ok
[INFO] [stdout] test commands::clip::test::fastq_clip_range_right ... ok
[INFO] [stdout] test commands::sort::testing::sort_paired_fasta_by_r1 ... ok
[INFO] [stdout] test commands::clip::test::fastq_clip_right ... ok
[INFO] [stdout] test commands::sort::testing::sort_single_fastq ... ok
[INFO] [stdout] test commands::count::test::test_count_fastq ... ok
[INFO] [stdout] test commands::sort::testing::sort_paired_fastq_by_r1 ... ok
[INFO] [stdout] test commands::t2g::testing::run_fasta_dot_gene_id ... ok
[INFO] [stdout] test commands::t2g::testing::run_fasta_dot_missing_gene_name ... ok
[INFO] [stdout] test commands::sort::testing::sort_paired_fastq_by_r2 ... ok
[INFO] [stdout] test commands::t2g::testing::run_fasta_nodot_gene_symbol ... ok
[INFO] [stdout] test commands::sort::testing::sort_single_fasta ... ok
[INFO] [stdout] test commands::t2g::testing::run_fasta_nodot_gene_id ... ok
[INFO] [stdout] test commands::unique::test::unique_fasta ... ok
[INFO] [stdout] test commands::unique::test::unique_fastq ... ok
[INFO] [stdout] test commands::t2g::testing::run_fasta_nodot_missing_gene_name ... ok
[INFO] [stdout] test commands::clip::test::fastq_no_clip ... ok
[INFO] [stdout] test commands::upper::test::run_fasta ... ok
[INFO] [stdout] test commands::upper::test::run_fastq ... ok
[INFO] [stdout] test commands::upper::test::run_invalid_fasta_allow_invalid ... ok
[INFO] [stdout] test commands::upper::test::run_invalid_fastq_allow_invalid ... ok
[INFO] [stdout] test commands::clip::test::fastq_clip_left ... ok
[INFO] [stdout] test commands::reverse::test::run_invalid_fasta - should panic ... ok
[INFO] [stdout] test commands::reverse::test::run_invalid_fastq - should panic ... ok
[INFO] [stdout] test commands::upper::test::run_invalid_fasta - should panic ... ok
[INFO] [stdout] test commands::upper::test::run_invalid_fastq - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 63 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "c7bc7b8d005fd0470d8e95e8bba832e3044361bc8673637b733aa037d39d448c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c7bc7b8d005fd0470d8e95e8bba832e3044361bc8673637b733aa037d39d448c", kill_on_drop: false }`
[INFO] [stdout] c7bc7b8d005fd0470d8e95e8bba832e3044361bc8673637b733aa037d39d448c
