[INFO] fetching crate bamslice 0.1.1...
[INFO] testing bamslice-0.1.1 against master#c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 for pr-146098-7
[INFO] extracting crate bamslice 0.1.1 into /workspace/builds/worker-2-tc1/source
[INFO] started tweaking crates.io crate bamslice 0.1.1
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate bamslice 0.1.1
[INFO] tweaked toml for crates.io crate bamslice 0.1.1 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate bamslice 0.1.1 on toolchain c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate bamslice 0.1.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded clap_derive v4.5.49
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded openssl-sys v0.9.110
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded rust-htslib v0.51.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded libz-sys v1.1.22
[INFO] [stderr]   Downloaded curl-sys v0.4.83+curl-8.15.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.5.4+3.5.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 88c4d51e9073bc91295f9195498944a86e1bdfa9ac891165077497fc6fea4133
[INFO] running `Command { std: "docker" "start" "-a" "88c4d51e9073bc91295f9195498944a86e1bdfa9ac891165077497fc6fea4133", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "88c4d51e9073bc91295f9195498944a86e1bdfa9ac891165077497fc6fea4133", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "88c4d51e9073bc91295f9195498944a86e1bdfa9ac891165077497fc6fea4133", kill_on_drop: false }`
[INFO] [stdout] 88c4d51e9073bc91295f9195498944a86e1bdfa9ac891165077497fc6fea4133
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 57860c39da43681337f5433b538e70b490c34beb9310f2241845aabf48e90e1f
[INFO] running `Command { std: "docker" "start" "-a" "57860c39da43681337f5433b538e70b490c34beb9310f2241845aabf48e90e1f", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.102
[INFO] [stderr]    Compiling unicode-ident v1.0.20
[INFO] [stderr]    Compiling stable_deref_trait v1.2.1
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling regex-syntax v0.8.8
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling cfg-if v1.0.4
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling bitflags v2.10.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling cc v1.2.41
[INFO] [stderr]    Compiling smallvec v1.15.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling anstyle v1.0.13
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.2
[INFO] [stderr]    Compiling anstyle-query v1.1.4
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling thiserror v2.0.17
[INFO] [stderr]    Compiling percent-encoding v2.3.2
[INFO] [stderr]    Compiling log v0.4.28
[INFO] [stderr]    Compiling clap_lex v0.7.6
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling anstream v0.6.21
[INFO] [stderr]    Compiling form_urlencoded v1.2.2
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling jiff v0.2.15
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling clap_builder v4.5.50
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling quote v1.0.41
[INFO] [stderr]    Compiling syn v2.0.108
[INFO] [stderr]    Compiling openssl-src v300.5.4+3.5.4
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling regex-automata v0.4.13
[INFO] [stderr]    Compiling openssl-sys v0.9.110
[INFO] [stderr]    Compiling libz-sys v1.1.22
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.83+curl-8.15.0
[INFO] [stderr]    Compiling regex v1.12.2
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.0
[INFO] [stderr]    Compiling zerovec-derive v0.11.1
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.17
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling env_filter v0.1.4
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling env_logger v0.11.8
[INFO] [stderr]    Compiling zerofrom v0.1.6
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling yoke v0.8.0
[INFO] [stderr]    Compiling zerovec v0.11.4
[INFO] [stderr]    Compiling zerotrie v0.2.2
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling clap v4.5.50
[INFO] [stderr]    Compiling tinystr v0.8.1
[INFO] [stderr]    Compiling potential_utf v0.1.3
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling icu_collections v2.0.0
[INFO] [stderr]    Compiling icu_locale_core v2.0.0
[INFO] [stderr]    Compiling icu_provider v2.0.0
[INFO] [stderr]    Compiling icu_normalizer v2.0.0
[INFO] [stderr]    Compiling icu_properties v2.0.1
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling url v2.5.7
[INFO] [stderr]    Compiling rust-htslib v0.51.0
[INFO] [stderr]    Compiling bamslice v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 35s
[INFO] running `Command { std: "docker" "inspect" "57860c39da43681337f5433b538e70b490c34beb9310f2241845aabf48e90e1f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "57860c39da43681337f5433b538e70b490c34beb9310f2241845aabf48e90e1f", kill_on_drop: false }`
[INFO] [stdout] 57860c39da43681337f5433b538e70b490c34beb9310f2241845aabf48e90e1f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d7c2352abfe228b9395613db8013e2757e67ded6a5ff5182c25dd12fd60fed8b
[INFO] running `Command { std: "docker" "start" "-a" "d7c2352abfe228b9395613db8013e2757e67ded6a5ff5182c25dd12fd60fed8b", kill_on_drop: false }`
[INFO] [stderr]    Compiling bamslice v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.55s
[INFO] running `Command { std: "docker" "inspect" "d7c2352abfe228b9395613db8013e2757e67ded6a5ff5182c25dd12fd60fed8b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d7c2352abfe228b9395613db8013e2757e67ded6a5ff5182c25dd12fd60fed8b", kill_on_drop: false }`
[INFO] [stdout] d7c2352abfe228b9395613db8013e2757e67ded6a5ff5182c25dd12fd60fed8b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] c5b1ac14fcc7e1bc9fa3e6dff6fcdb0126dd5e284149dddaa3a375bb1cfdb412
[INFO] running `Command { std: "docker" "start" "-a" "c5b1ac14fcc7e1bc9fa3e6dff6fcdb0126dd5e284149dddaa3a375bb1cfdb412", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.17s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/bamslice-183a795ea704de74)
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test tests::test_is_read1_paired_last ... ok
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/bamslice-f3c6b5cc1c9a639e)
[INFO] [stdout] test tests::test_is_read1_paired_first ... ok
[INFO] [stdout] test tests::test_is_read1_unpaired ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/integration_test.rs (/opt/rustwide/target/debug/deps/integration_test-0066763843204895)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test test_ont_reads ... ok
[INFO] [stdout] test test_interleaved_pairs_in_output ... ok
[INFO] [stdout] test test_first_read_content ... ok
[INFO] [stdout] test test_complete_pairs_at_boundaries ... ok
[INFO] [stdout] test test_whole_file_processing ... ok
[INFO] [stdout] test test_split_processing_produces_all_reads_no_dupes ... ok
[INFO] [stdout] test test_blocks_start_with_read1 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.41s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests bamslice
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "c5b1ac14fcc7e1bc9fa3e6dff6fcdb0126dd5e284149dddaa3a375bb1cfdb412", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c5b1ac14fcc7e1bc9fa3e6dff6fcdb0126dd5e284149dddaa3a375bb1cfdb412", kill_on_drop: false }`
[INFO] [stdout] c5b1ac14fcc7e1bc9fa3e6dff6fcdb0126dd5e284149dddaa3a375bb1cfdb412
