[INFO] cloning repository https://github.com/sstadick/rumi
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sstadick/rumi" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsstadick%2Frumi", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsstadick%2Frumi'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 34a92eb41857a1a1c4c096f516a0271ed57d16f4
[INFO] testing sstadick/rumi against master#c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 for pr-146098-7
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsstadick%2Frumi" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/sstadick/rumi
[INFO] finished tweaking git repo https://github.com/sstadick/rumi
[INFO] tweaked toml for git repo https://github.com/sstadick/rumi written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/sstadick/rumi on toolchain c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/sstadick/rumi already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded unicode-bidi v0.3.4
[INFO] [stderr]   Downloaded snafu-derive v0.5.0
[INFO] [stderr]   Downloaded idna v0.2.0
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded either v1.5.2
[INFO] [stderr]   Downloaded quick-error v1.2.2
[INFO] [stderr]   Downloaded rustc_version v0.2.3
[INFO] [stderr]   Downloaded thread_local v0.3.6
[INFO] [stderr]   Downloaded libloading v0.5.2
[INFO] [stderr]   Downloaded nodrop v0.1.13
[INFO] [stderr]   Downloaded memchr v2.2.1
[INFO] [stderr]   Downloaded backtrace v0.3.40
[INFO] [stderr]   Downloaded regex v1.3.1
[INFO] [stderr]   Downloaded regex-syntax v0.6.12
[INFO] [stderr]   Downloaded libz-sys v1.0.25
[INFO] [stderr]   Downloaded bzip2-sys v0.1.7
[INFO] [stderr]   Downloaded backtrace-sys v0.1.32
[INFO] [stderr]   Downloaded syn v0.15.39
[INFO] [stderr]   Downloaded nom v4.2.3
[INFO] [stderr]   Downloaded memoffset v0.5.1
[INFO] [stderr]   Downloaded winapi-util v0.1.2
[INFO] [stderr]   Downloaded clang-sys v0.28.0
[INFO] [stderr]   Downloaded bio-types v0.5.1
[INFO] [stderr]   Downloaded serde_derive v1.0.97
[INFO] [stderr]   Downloaded serde v1.0.97
[INFO] [stderr]   Downloaded unicode-normalization v0.1.8
[INFO] [stderr]   Downloaded fs-utils v1.1.1
[INFO] [stderr]   Downloaded smallvec v0.6.10
[INFO] [stderr]   Downloaded rayon v1.1.0
[INFO] [stderr]   Downloaded rustc-hash v1.0.1
[INFO] [stderr]   Downloaded libc v0.2.65
[INFO] [stderr]   Downloaded basebits v1.2.0
[INFO] [stderr]   Downloaded bindgen v0.51.1
[INFO] [stderr]   Downloaded itertools v0.8.0
[INFO] [stderr]   Downloaded winapi v0.3.7
[INFO] [stderr]   Downloaded arrayvec v0.4.11
[INFO] [stderr]   Downloaded scopeguard v1.0.0
[INFO] [stderr]   Downloaded crossbeam-epoch v0.7.2
[INFO] [stderr]   Downloaded crossbeam-queue v0.1.2
[INFO] [stderr]   Downloaded num_cpus v1.10.1
[INFO] [stderr]   Downloaded rayon-core v1.5.0
[INFO] [stderr]   Downloaded cexpr v0.3.5
[INFO] [stderr]   Downloaded glob v0.2.11
[INFO] [stderr]   Downloaded humantime v1.2.0
[INFO] [stderr]   Downloaded wincolor v1.0.1
[INFO] [stderr]   Downloaded env_logger v0.6.2
[INFO] [stderr]   Downloaded log v0.4.7
[INFO] [stderr]   Downloaded shlex v0.1.1
[INFO] [stderr]   Downloaded unicode-width v0.1.5
[INFO] [stderr]   Downloaded proc-macro2 v1.0.6
[INFO] [stderr]   Downloaded crossbeam-deque v0.6.3
[INFO] [stderr]   Downloaded crossbeam-utils v0.6.6
[INFO] [stderr]   Downloaded atty v0.2.13
[INFO] [stderr]   Downloaded termcolor v1.0.5
[INFO] [stderr]   Downloaded which v3.1.0
[INFO] [stderr]   Downloaded vcpkg v0.2.7
[INFO] [stderr]   Downloaded pkg-config v0.3.14
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded cc v1.0.37
[INFO] [stderr]   Downloaded cfg-if v0.1.9
[INFO] [stderr]   Downloaded url v2.1.0
[INFO] [stderr]   Downloaded rustc-demangle v0.1.16
[INFO] [stderr]   Downloaded doc-comment v0.3.1
[INFO] [stderr]   Downloaded snafu v0.5.0
[INFO] [stderr]   Downloaded lzma-sys v0.1.14
[INFO] [stderr]   Downloaded rust-htslib v0.26.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2f42f03f35ca38fd1ef31a67ff4c4fddc98345ef3595799498e43728e2920276
[INFO] running `Command { std: "docker" "start" "-a" "2f42f03f35ca38fd1ef31a67ff4c4fddc98345ef3595799498e43728e2920276", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2f42f03f35ca38fd1ef31a67ff4c4fddc98345ef3595799498e43728e2920276", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2f42f03f35ca38fd1ef31a67ff4c4fddc98345ef3595799498e43728e2920276", kill_on_drop: false }`
[INFO] [stdout] 2f42f03f35ca38fd1ef31a67ff4c4fddc98345ef3595799498e43728e2920276
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9932e461c54b1d78f78a5cb982f6eb29ee9a7632dc0c5b1741b629157c0b43a9
[INFO] running `Command { std: "docker" "start" "-a" "9932e461c54b1d78f78a5cb982f6eb29ee9a7632dc0c5b1741b629157c0b43a9", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.0.37
[INFO] [stderr]    Compiling libc v0.2.65
[INFO] [stderr]    Compiling cfg-if v0.1.9
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling semver-parser v0.7.0
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling pkg-config v0.3.14
[INFO] [stderr]    Compiling quick-error v1.2.2
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]    Compiling clang-sys v0.28.0
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling rustc_version v0.2.3
[INFO] [stderr]    Compiling byteorder v1.3.2
[INFO] [stderr]    Compiling regex-syntax v0.6.12
[INFO] [stderr]    Compiling aho-corasick v0.7.6
[INFO] [stderr]    Compiling proc-macro2 v1.0.6
[INFO] [stderr]    Compiling log v0.4.7
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling syn v0.15.39
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling atty v0.2.13
[INFO] [stderr]    Compiling memoffset v0.5.1
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling arrayvec v0.4.11
[INFO] [stderr]    Compiling unicode-width v0.1.5
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling backtrace-sys v0.1.32
[INFO] [stderr]    Compiling humantime v1.2.0
[INFO] [stderr]    Compiling crossbeam-utils v0.6.6
[INFO] [stderr]    Compiling bindgen v0.51.1
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling termcolor v1.0.5
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling nodrop v0.1.13
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling cexpr v0.3.5
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling rustc-hash v1.0.1
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling bzip2-sys v0.1.7
[INFO] [stderr]    Compiling lzma-sys v0.1.14
[INFO] [stderr]    Compiling regex v1.3.1
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling which v3.1.0
[INFO] [stderr]    Compiling matches v0.1.8
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling serde v1.0.97
[INFO] [stderr]    Compiling scopeguard v1.0.0
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling smallvec v0.6.10
[INFO] [stderr]    Compiling doc-comment v0.3.1
[INFO] [stderr]    Compiling unicode-normalization v0.1.8
[INFO] [stderr]    Compiling crossbeam-epoch v0.7.2
[INFO] [stderr]    Compiling unicode-bidi v0.3.4
[INFO] [stderr]    Compiling env_logger v0.6.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling fs-utils v1.1.1
[INFO] [stderr]    Compiling either v1.5.2
[INFO] [stderr]    Compiling rustc-demangle v0.1.16
[INFO] [stderr]    Compiling rayon-core v1.5.0
[INFO] [stderr]    Compiling idna v0.2.0
[INFO] [stderr]    Compiling backtrace v0.3.40
[INFO] [stderr]    Compiling crossbeam-deque v0.6.3
[INFO] [stderr]    Compiling crossbeam-queue v0.1.2
[INFO] [stderr]    Compiling num_cpus v1.10.1
[INFO] [stderr]    Compiling percent-encoding v2.1.0
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.97
[INFO] [stderr]    Compiling url v2.1.0
[INFO] [stderr]    Compiling itertools v0.8.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling rayon v1.1.0
[INFO] [stderr]    Compiling basebits v1.2.0
[INFO] [stderr]    Compiling snafu v0.5.0
[INFO] [stderr]    Compiling rust-htslib v0.26.0
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr] error: failed to run custom build command for `rust-htslib v0.26.0`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/rust-htslib-6f0ffefaa74d37b9/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   OPT_LEVEL = Some("0")
[INFO] [stderr]   TARGET = Some("x86_64-unknown-linux-gnu")
[INFO] [stderr]   HOST = Some("x86_64-unknown-linux-gnu")
[INFO] [stderr]   CC_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CC_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CC = None
[INFO] [stderr]   CC = None
[INFO] [stderr]   CFLAGS_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CFLAGS_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CFLAGS = None
[INFO] [stderr]   CFLAGS = None
[INFO] [stderr]   CRATE_CC_NO_DEFAULTS = None
[INFO] [stderr]   DEBUG = Some("true")
[INFO] [stderr]   echo '/* Default config.h generated by Makefile */' > config.h
[INFO] [stderr]   echo '#define HAVE_LIBBZ2 1' >> config.h
[INFO] [stderr]   echo '#define HAVE_LIBLZMA 1' >> config.h
[INFO] [stderr]   echo '#define HAVE_LZMA_H 1' >> config.h
[INFO] [stderr]   echo '#define HAVE_FSEEKO 1' >> config.h
[INFO] [stderr]   echo '#define HAVE_DRAND48 1' >> config.h
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o kfunc.o kfunc.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o knetfile.o knetfile.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o kstring.o kstring.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o bcf_sr_sort.o bcf_sr_sort.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o bgzf.o bgzf.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o errmod.o errmod.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o faidx.o faidx.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o hfile.o hfile.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o hfile_net.o hfile_net.c
[INFO] [stderr]   echo '#define HTS_VERSION "1.9"' > version.h
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o hts.o hts.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o hts_os.o hts_os.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o md5.o md5.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o multipart.o multipart.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o probaln.o probaln.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o realn.o realn.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o regidx.o regidx.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o sam.o sam.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o synced_bcf_reader.o synced_bcf_reader.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o vcf_sweep.o vcf_sweep.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o tbx.o tbx.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o textutils.o textutils.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o thread_pool.o thread_pool.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o vcf.o vcf.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o vcfutils.o vcfutils.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/cram_codecs.o cram/cram_codecs.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/cram_decode.o cram/cram_decode.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/cram_encode.o cram/cram_encode.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/cram_external.o cram/cram_external.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/cram_index.o cram/cram_index.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/cram_io.o cram/cram_io.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/cram_samtools.o cram/cram_samtools.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/cram_stats.o cram/cram_stats.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/files.o cram/files.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/mFILE.o cram/mFILE.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/open_trace_file.o cram/open_trace_file.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/pooled_alloc.o cram/pooled_alloc.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/rANS_static.o cram/rANS_static.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/sam_header.o cram/sam_header.c
[INFO] [stderr]   cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I.  -c -o cram/string_alloc.o cram/string_alloc.c
[INFO] [stderr]   ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o
[INFO] [stderr]   ranlib libhts.a
[INFO] [stderr]   running: "cc" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-static" "-I" "/opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include" "-o" "/opt/rustwide/target/debug/build/rust-htslib-c132e775c77b731f/out/wrapper.o" "-c" "wrapper.c"
[INFO] [stderr]   exit status: 0
[INFO] [stderr]   AR_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   AR_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_AR = None
[INFO] [stderr]   AR = None
[INFO] [stderr]   running: "ar" "crs" "/opt/rustwide/target/debug/build/rust-htslib-c132e775c77b731f/out/libwrapper.a" "/opt/rustwide/target/debug/build/rust-htslib-c132e775c77b731f/out/wrapper.o"
[INFO] [stderr]   exit status: 0
[INFO] [stderr]   cargo:rustc-link-lib=static=wrapper
[INFO] [stderr]   cargo:rustc-link-search=native=/opt/rustwide/target/debug/build/rust-htslib-c132e775c77b731f/out
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   hts.c: In function 'hts_idx_init':
[INFO] [stderr]   hts.c:1386:59: warning: overflow in conversion from 'uint32_t' {aka 'unsigned int'} to 'int' changes value from 'idx->z.last_bin = 4294967295' to '-1' [-Woverflow]
[INFO] [stderr]    1386 |     idx->z.save_bin = idx->z.save_tid = idx->z.last_tid = idx->z.last_bin = 0xffffffffu;
[INFO] [stderr]         |                                                           ^~~
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (1512) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.6/src/fallback.rs:594:9:
[INFO] [stderr]   "htsFormat_struct_(unnamed_at__/htslib/htslib/hts_h_154_5)" is not a valid Ident
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x648584284ae2 - std::backtrace_rs::backtrace::libunwind::trace::ha50a1f28c7a10cf8
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x648584284ae2 - std::backtrace_rs::backtrace::trace_unsynchronized::h34f8c4ec82a320bc
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x648584284ae2 - std::sys::backtrace::_print_fmt::h2d23e84e13d343bc
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x648584284ae2 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::hde21067283f7e82e
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x648584295bcf - core::fmt::rt::Argument::fmt::he65307037dca33c6
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/core/src/fmt/rt.rs:173:76
[INFO] [stderr]      5:     0x648584295bcf - core::fmt::write::h24186904251c31cb
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/core/src/fmt/mod.rs:1469:25
[INFO] [stderr]      6:     0x6485842529b3 - std::io::default_write_fmt::hdc5d19b6df666f61
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x6485842529b3 - std::io::Write::write_fmt::h3ab9f1f4d8d19b72
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/io/mod.rs:1954:13
[INFO] [stderr]      8:     0x64858425ea02 - std::sys::backtrace::BacktraceLock::print::he038489aba5894a6
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x6485842620cf - std::panicking::default_hook::{{closure}}::h80a26d916c49679b
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:301:27
[INFO] [stderr]     10:     0x648584261f29 - std::panicking::default_hook::he2e9efee79b3dce9
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:328:9
[INFO] [stderr]     11:     0x6485842626a5 - std::panicking::panic_with_hook::hf5648b7cec6bc73e
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:834:13
[INFO] [stderr]     12:     0x64858426253a - std::panicking::panic_handler::{{closure}}::h1b2ed3864ba94359
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:707:13
[INFO] [stderr]     13:     0x64858425eb49 - std::sys::backtrace::__rust_end_short_backtrace::hd0186b2b27f5aaa7
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/sys/backtrace.rs:174:18
[INFO] [stderr]     14:     0x648584246cdd - __rustc[f7dae8b92efe1d7a]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:698:5
[INFO] [stderr]     15:     0x64858429fcf0 - core::panicking::panic_fmt::hb5d6b83773432920
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/core/src/panicking.rs:80:14
[INFO] [stderr]     16:     0x648584159d0f - proc_macro2::fallback::validate_ident::h86d0c8e5634015a7
[INFO] [stderr]     17:     0x64858415c491 - proc_macro2::fallback::Ident::_new::h416686ce95357f0e
[INFO] [stderr]     18:     0x64858415c44f - proc_macro2::fallback::Ident::new::h2eae8e919d8e342d
[INFO] [stderr]     19:     0x6485841522a8 - proc_macro2::Ident::new::h5aed34f5171dcdbd
[INFO] [stderr]     20:     0x648583feaee5 - bindgen::ir::context::BindgenContext::rust_ident_raw::h4ae9e1c9d1f8a9ac
[INFO] [stderr]     21:     0x648583fe8ed0 - bindgen::ir::context::BindgenContext::rust_ident::h3c783783420330a5
[INFO] [stderr]     22:     0x648583efaaea - <bindgen::ir::comp::CompInfo as bindgen::codegen::CodeGenerator>::codegen::h7a8e69cef5622f01
[INFO] [stderr]     23:     0x648583f32b0f - <bindgen::ir::ty::Type as bindgen::codegen::CodeGenerator>::codegen::hcd1c1fd1ad7f75b4
[INFO] [stderr]     24:     0x648583f16649 - <bindgen::ir::item::Item as bindgen::codegen::CodeGenerator>::codegen::hce5f8f284d745362
[INFO] [stderr]     25:     0x648583f027d1 - <bindgen::ir::comp::CompInfo as bindgen::codegen::CodeGenerator>::codegen::h7a8e69cef5622f01
[INFO] [stderr]     26:     0x648583f32b0f - <bindgen::ir::ty::Type as bindgen::codegen::CodeGenerator>::codegen::hcd1c1fd1ad7f75b4
[INFO] [stderr]     27:     0x648583f16649 - <bindgen::ir::item::Item as bindgen::codegen::CodeGenerator>::codegen::hce5f8f284d745362
[INFO] [stderr]     28:     0x648583fd0d95 - <bindgen::ir::module::Module as bindgen::codegen::CodeGenerator>::codegen::{{closure}}::h02b38bd50176670d
[INFO] [stderr]     29:     0x648583f37d71 - <bindgen::ir::module::Module as bindgen::codegen::CodeGenerator>::codegen::h8b7958cb0bf6d755
[INFO] [stderr]     30:     0x648583f16624 - <bindgen::ir::item::Item as bindgen::codegen::CodeGenerator>::codegen::hce5f8f284d745362
[INFO] [stderr]     31:     0x648583fddbdc - bindgen::codegen::codegen::{{closure}}::h60f175f47d95c7b2
[INFO] [stderr]     32:     0x648583ff5da8 - bindgen::ir::context::BindgenContext::gen::hd6b3e65776c67b3b
[INFO] [stderr]     33:     0x648583fdd46d - bindgen::codegen::codegen::h3c22a82d8f9cbfd1
[INFO] [stderr]     34:     0x64858401a9d6 - bindgen::Bindings::generate::h1443f415f1e86dfd
[INFO] [stderr]     35:     0x648584017b35 - bindgen::Builder::generate::h4bbf678ba1106766
[INFO] [stderr]     36:     0x648583e9ccaf - build_script_build::main::h9474e35dc7188893
[INFO] [stderr]     37:     0x648583e9e603 - core::ops::function::FnOnce::call_once::h82e1334bbfcf52dd
[INFO] [stderr]     38:     0x648583e9e2e6 - std::sys::backtrace::__rust_begin_short_backtrace::he418083ea5191031
[INFO] [stderr]     39:     0x648583e9e249 - std::rt::lang_start::{{closure}}::habf970079025e7e1
[INFO] [stderr]     40:     0x648584254530 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h8434f550918e723f
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/core/src/ops/function.rs:287:21
[INFO] [stderr]     41:     0x648584254530 - std::panicking::catch_unwind::do_call::h7f7a838f33db43be
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:590:40
[INFO] [stderr]     42:     0x648584254530 - std::panicking::catch_unwind::hf345702047129f6d
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:553:19
[INFO] [stderr]     43:     0x648584254530 - std::panic::catch_unwind::h42f92c278294a3a0
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panic.rs:359:14
[INFO] [stderr]     44:     0x648584254530 - std::rt::lang_start_internal::{{closure}}::ha6834eab5ce60f45
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/rt.rs:175:24
[INFO] [stderr]     45:     0x648584254530 - std::panicking::catch_unwind::do_call::hf4afda32c60c9e55
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:590:40
[INFO] [stderr]     46:     0x648584254530 - std::panicking::catch_unwind::hbfda5503aab4db1e
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panicking.rs:553:19
[INFO] [stderr]     47:     0x648584254530 - std::panic::catch_unwind::h1a1ed11560d244f4
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/panic.rs:359:14
[INFO] [stderr]     48:     0x648584254530 - std::rt::lang_start_internal::h1f713c0146d469ad
[INFO] [stderr]                                  at /rustc/c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38/library/std/src/rt.rs:171:5
[INFO] [stderr]     49:     0x648583e9e231 - std::rt::lang_start::h0847c4a53634f30b
[INFO] [stderr]     50:     0x648583ea0675 - main
[INFO] [stderr]     51:     0x74154ee711ca - <unknown>
[INFO] [stderr]     52:     0x74154ee7128b - __libc_start_main
[INFO] [stderr]     53:     0x648583e9b6b5 - _start
[INFO] [stderr]     54:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "9932e461c54b1d78f78a5cb982f6eb29ee9a7632dc0c5b1741b629157c0b43a9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9932e461c54b1d78f78a5cb982f6eb29ee9a7632dc0c5b1741b629157c0b43a9", kill_on_drop: false }`
[INFO] [stdout] 9932e461c54b1d78f78a5cb982f6eb29ee9a7632dc0c5b1741b629157c0b43a9
