[INFO] cloning repository https://github.com/ormorni/bio_utils [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ormorni/bio_utils" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Formorni%2Fbio_utils", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Formorni%2Fbio_utils'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] c41f1e42db2a238633814bed7e64f05c652fe7fa [INFO] testing ormorni/bio_utils against try#9f93af291970322f4f1c6315ccde4d7078201159 for pr-146098-6 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Formorni%2Fbio_utils" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/ormorni/bio_utils [INFO] finished tweaking git repo https://github.com/ormorni/bio_utils [INFO] tweaked toml for git repo https://github.com/ormorni/bio_utils written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/ormorni/bio_utils on toolchain 9f93af291970322f4f1c6315ccde4d7078201159 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/ormorni/bio_utils already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded transpose v0.2.1 [INFO] [stderr] Downloaded realfft v3.0.1 [INFO] [stderr] Downloaded primal-check v0.3.2 [INFO] [stderr] Downloaded simba v0.7.2 [INFO] [stderr] Downloaded uuid v1.1.2 [INFO] [stderr] Downloaded libm v0.2.5 [INFO] [stderr] Downloaded itertools v0.10.4 [INFO] [stderr] Downloaded rustfft v6.0.1 [INFO] [stderr] Downloaded nalgebra v0.31.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 066c9c1762455f377ced6fddc890496f433c004324c4d906734a8baf0c6daf92 [INFO] running `Command { std: "docker" "start" "-a" "066c9c1762455f377ced6fddc890496f433c004324c4d906734a8baf0c6daf92", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "066c9c1762455f377ced6fddc890496f433c004324c4d906734a8baf0c6daf92", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "066c9c1762455f377ced6fddc890496f433c004324c4d906734a8baf0c6daf92", kill_on_drop: false }` [INFO] [stdout] 066c9c1762455f377ced6fddc890496f433c004324c4d906734a8baf0c6daf92 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0760736d46352dcf3bd2937d5b6c0117f480ad35dbbf5bf8fc88a1c896d218f4 [INFO] running `Command { std: "docker" "start" "-a" "0760736d46352dcf3bd2937d5b6c0117f480ad35dbbf5bf8fc88a1c896d218f4", kill_on_drop: false }` [INFO] [stderr] Compiling libm v0.2.5 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling libc v0.2.132 [INFO] [stderr] Compiling crossbeam-utils v0.8.11 [INFO] [stderr] Compiling proc-macro2 v1.0.43 [INFO] [stderr] Compiling once_cell v1.14.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.10 [INFO] [stderr] Compiling quote v1.0.21 [INFO] [stderr] Compiling unicode-ident v1.0.4 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling bytemuck v1.12.1 [INFO] [stderr] Compiling syn v1.0.99 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling memoffset v0.6.5 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling rayon-core v1.9.3 [INFO] [stderr] Compiling typenum v1.15.0 [INFO] [stderr] Compiling strength_reduce v0.2.3 [INFO] [stderr] Compiling ppv-lite86 v0.2.16 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling safe_arch v0.6.0 [INFO] [stderr] Compiling paste v1.0.9 [INFO] [stderr] Compiling either v1.8.0 [INFO] [stderr] Compiling matrixmultiply v0.3.2 [INFO] [stderr] Compiling rayon v1.5.3 [INFO] [stderr] Compiling regex-syntax v0.6.27 [INFO] [stderr] Compiling byteorder v1.4.3 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling wide v0.7.4 [INFO] [stderr] Compiling itertools v0.10.4 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.6 [INFO] [stderr] Compiling aho-corasick v0.7.19 [INFO] [stderr] Compiling getrandom v0.2.7 [INFO] [stderr] Compiling num_cpus v1.13.1 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling uuid v1.1.2 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling crossbeam-deque v0.8.2 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling num-complex v0.4.2 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling primal-check v0.3.2 [INFO] [stderr] Compiling transpose v0.2.1 [INFO] [stderr] Compiling simba v0.7.2 [INFO] [stderr] Compiling rustfft v6.0.1 [INFO] [stderr] Compiling regex v1.6.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling nalgebra v0.31.1 [INFO] [stderr] Compiling realfft v3.0.1 [INFO] [stderr] Compiling bio_utils v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `Lines` [INFO] [stdout] --> src/alignment/parsers.rs:2:64 [INFO] [stdout] | [INFO] [stdout] 2 | use std::io::{BufRead, BufReader, BufWriter, Error, ErrorKind, Lines, Read, Write}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Float` [INFO] [stdout] --> src/distributions/conv.rs:3:27 [INFO] [stdout] | [INFO] [stdout] 3 | use realfft::num_traits::{Float, FromPrimitive, Zero}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `name_length` [INFO] [stdout] --> src/alignment/parsers.rs:86:17 [INFO] [stdout] | [INFO] [stdout] 86 | let name_length = reader.read_until(b'\n', &mut self.buf).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_name_length` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `FastaIterState` is never used [INFO] [stdout] --> src/alignment/parsers.rs:43:6 [INFO] [stdout] | [INFO] [stdout] 43 | enum FastaIterState { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/phylogeny/tree.rs:108:24 [INFO] [stdout] | [INFO] [stdout] 108 | pub fn child_edges(&self) -> impl Iterator> + Clone { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 108 | pub fn child_edges(&self) -> impl Iterator> + Clone { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/alignment/alignment.rs:77:17 [INFO] [stdout] | [INFO] [stdout] 77 | pub fn iter(&self) -> Iter { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 77 | pub fn iter(&self) -> Iter<'_, String, Sequence> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/alignment/alignment.rs:80:21 [INFO] [stdout] | [INFO] [stdout] 80 | pub fn iter_mut(&mut self) -> IterMut { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 80 | pub fn iter_mut(&mut self) -> IterMut<'_, String, Sequence> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/alignment/alignment.rs:83:19 [INFO] [stdout] | [INFO] [stdout] 83 | pub fn values(&self) -> Values { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 83 | pub fn values(&self) -> Values<'_, String, Sequence> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/alignment/alignment.rs:86:17 [INFO] [stdout] | [INFO] [stdout] 86 | pub fn keys(&self) -> Keys { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 86 | pub fn keys(&self) -> Keys<'_, String, Sequence> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [optimized + debuginfo] target(s) in 1m 06s [INFO] running `Command { std: "docker" "inspect" "0760736d46352dcf3bd2937d5b6c0117f480ad35dbbf5bf8fc88a1c896d218f4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0760736d46352dcf3bd2937d5b6c0117f480ad35dbbf5bf8fc88a1c896d218f4", kill_on_drop: false }` [INFO] [stdout] 0760736d46352dcf3bd2937d5b6c0117f480ad35dbbf5bf8fc88a1c896d218f4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] acea855cac78ee54f1d2b3bfb0ce12e72be3d02bb728a9e3ca3befbc4c941247 [INFO] running `Command { std: "docker" "start" "-a" "acea855cac78ee54f1d2b3bfb0ce12e72be3d02bb728a9e3ca3befbc4c941247", kill_on_drop: false }` [INFO] [stderr] Compiling bio_utils v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `Lines` [INFO] [stdout] --> src/alignment/parsers.rs:2:64 [INFO] [stdout] | [INFO] [stdout] 2 | use std::io::{BufRead, BufReader, BufWriter, Error, ErrorKind, Lines, Read, Write}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Float` [INFO] [stdout] --> src/distributions/conv.rs:3:27 [INFO] [stdout] | [INFO] [stdout] 3 | use realfft::num_traits::{Float, FromPrimitive, Zero}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `name_length` [INFO] [stdout] --> src/alignment/parsers.rs:86:17 [INFO] [stdout] | [INFO] [stdout] 86 | let name_length = reader.read_until(b'\n', &mut self.buf).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_name_length` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `FastaIterState` is never used [INFO] [stdout] --> src/alignment/parsers.rs:43:6 [INFO] [stdout] | [INFO] [stdout] 43 | enum FastaIterState { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/phylogeny/tree.rs:108:24 [INFO] [stdout] | [INFO] [stdout] 108 | pub fn child_edges(&self) -> impl Iterator> + Clone { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 108 | pub fn child_edges(&self) -> impl Iterator> + Clone { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/alignment/alignment.rs:77:17 [INFO] [stdout] | [INFO] [stdout] 77 | pub fn iter(&self) -> Iter { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 77 | pub fn iter(&self) -> Iter<'_, String, Sequence> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/alignment/alignment.rs:80:21 [INFO] [stdout] | [INFO] [stdout] 80 | pub fn iter_mut(&mut self) -> IterMut { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 80 | pub fn iter_mut(&mut self) -> IterMut<'_, String, Sequence> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/alignment/alignment.rs:83:19 [INFO] [stdout] | [INFO] [stdout] 83 | pub fn values(&self) -> Values { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 83 | pub fn values(&self) -> Values<'_, String, Sequence> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/alignment/alignment.rs:86:17 [INFO] [stdout] | [INFO] [stdout] 86 | pub fn keys(&self) -> Keys { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 86 | pub fn keys(&self) -> Keys<'_, String, Sequence> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Lines` [INFO] [stdout] --> src/alignment/parsers.rs:2:64 [INFO] [stdout] | [INFO] [stdout] 2 | use std::io::{BufRead, BufReader, BufWriter, Error, ErrorKind, Lines, Read, Write}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Float` [INFO] [stdout] --> src/distributions/conv.rs:3:27 [INFO] [stdout] | [INFO] [stdout] 3 | use realfft::num_traits::{Float, FromPrimitive, Zero}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `name_length` [INFO] [stdout] --> src/alignment/parsers.rs:86:17 [INFO] [stdout] | [INFO] [stdout] 86 | let name_length = reader.read_until(b'\n', &mut self.buf).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_name_length` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `FastaIterState` is never used [INFO] [stdout] --> src/alignment/parsers.rs:43:6 [INFO] [stdout] | [INFO] [stdout] 43 | enum FastaIterState { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/phylogeny/tree.rs:108:24 [INFO] [stdout] | [INFO] [stdout] 108 | pub fn child_edges(&self) -> impl Iterator> + Clone { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 108 | pub fn child_edges(&self) -> impl Iterator> + Clone { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/alignment/alignment.rs:77:17 [INFO] [stdout] | [INFO] [stdout] 77 | pub fn iter(&self) -> Iter { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 77 | pub fn iter(&self) -> Iter<'_, String, Sequence> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/alignment/alignment.rs:80:21 [INFO] [stdout] | [INFO] [stdout] 80 | pub fn iter_mut(&mut self) -> IterMut { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 80 | pub fn iter_mut(&mut self) -> IterMut<'_, String, Sequence> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/alignment/alignment.rs:83:19 [INFO] [stdout] | [INFO] [stdout] 83 | pub fn values(&self) -> Values { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 83 | pub fn values(&self) -> Values<'_, String, Sequence> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/alignment/alignment.rs:86:17 [INFO] [stdout] | [INFO] [stdout] 86 | pub fn keys(&self) -> Keys { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 86 | pub fn keys(&self) -> Keys<'_, String, Sequence> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [optimized + debuginfo] target(s) in 20.36s [INFO] running `Command { std: "docker" "inspect" "acea855cac78ee54f1d2b3bfb0ce12e72be3d02bb728a9e3ca3befbc4c941247", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "acea855cac78ee54f1d2b3bfb0ce12e72be3d02bb728a9e3ca3befbc4c941247", kill_on_drop: false }` [INFO] [stdout] acea855cac78ee54f1d2b3bfb0ce12e72be3d02bb728a9e3ca3befbc4c941247 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 3a1f3996d9277264b71cbbf566846e6805d64a1f1880197f5dacd2b19d3fc68a [INFO] running `Command { std: "docker" "start" "-a" "3a1f3996d9277264b71cbbf566846e6805d64a1f1880197f5dacd2b19d3fc68a", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `Lines` [INFO] [stderr] --> src/alignment/parsers.rs:2:64 [INFO] [stderr] | [INFO] [stderr] 2 | use std::io::{BufRead, BufReader, BufWriter, Error, ErrorKind, Lines, Read, Write}; [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `Float` [INFO] [stderr] --> src/distributions/conv.rs:3:27 [INFO] [stderr] | [INFO] [stderr] 3 | use realfft::num_traits::{Float, FromPrimitive, Zero}; [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `name_length` [INFO] [stderr] --> src/alignment/parsers.rs:86:17 [INFO] [stderr] | [INFO] [stderr] 86 | let name_length = reader.read_until(b'\n', &mut self.buf).unwrap(); [INFO] [stderr] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_name_length` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: enum `FastaIterState` is never used [INFO] [stderr] --> src/alignment/parsers.rs:43:6 [INFO] [stderr] | [INFO] [stderr] 43 | enum FastaIterState { [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/phylogeny/tree.rs:108:24 [INFO] [stderr] | [INFO] [stderr] 108 | pub fn child_edges(&self) -> impl Iterator> + Clone { [INFO] [stderr] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 108 | pub fn child_edges(&self) -> impl Iterator> + Clone { [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/alignment/alignment.rs:77:17 [INFO] [stderr] | [INFO] [stderr] 77 | pub fn iter(&self) -> Iter { [INFO] [stderr] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 77 | pub fn iter(&self) -> Iter<'_, String, Sequence> { [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/alignment/alignment.rs:80:21 [INFO] [stderr] | [INFO] [stderr] 80 | pub fn iter_mut(&mut self) -> IterMut { [INFO] [stderr] | ^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 80 | pub fn iter_mut(&mut self) -> IterMut<'_, String, Sequence> { [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/alignment/alignment.rs:83:19 [INFO] [stderr] | [INFO] [stderr] 83 | pub fn values(&self) -> Values { [INFO] [stderr] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 83 | pub fn values(&self) -> Values<'_, String, Sequence> { [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/alignment/alignment.rs:86:17 [INFO] [stderr] | [INFO] [stderr] 86 | pub fn keys(&self) -> Keys { [INFO] [stderr] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 86 | pub fn keys(&self) -> Keys<'_, String, Sequence> { [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: `bio_utils` (lib) generated 9 warnings (run `cargo fix --lib -p bio_utils` to apply 8 suggestions) [INFO] [stderr] warning: `bio_utils` (lib test) generated 9 warnings (9 duplicates) [INFO] [stderr] Finished `test` profile [optimized + debuginfo] target(s) in 0.14s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/bio_utils-03619d05c45496a8) [INFO] [stdout] [INFO] [stdout] running 26 tests [INFO] [stdout] test alignment::amino::tests::test_amino_acid_int ... ok [INFO] [stdout] test alignment::amino::tests::test_amino_acid_char ... ok [INFO] [stdout] test distributions::conv::tests::test_conv ... ok [INFO] [stdout] test alignment::parsers::tests::test_stockholm ... ok [INFO] [stdout] test distributions::dist1d::tests_1d::test_av ... ok [INFO] [stdout] test distributions::dist1d::tests_1d::trim_test ... ok [INFO] [stdout] test distributions::dist1d::tests_1d::test_add_assign ... ok [INFO] [stdout] test alignment::parsers::tests::test_fasta ... ok [INFO] [stdout] test distributions::dist2d::tests_2d::test_from_f64 ... ok [INFO] [stdout] test distributions::dist1d::tests_1d::test_conv ... ok [INFO] [stdout] test distributions::dist1d::tests_1d::test_add ... ok [INFO] [stdout] test distributions::dist1d::tests_1d::test_ops ... ok [INFO] [stdout] test distributions::dist1d::tests_1d::trim_example ... ok [INFO] [stdout] test distributions::dist2d::tests_2d::test_convolve ... ok [INFO] [stdout] test distributions::dist2d::tests_2d::test_weighted_average ... ok [INFO] [stdout] test phylogeny::tree_iterators::tests::test_postorder ... ok [INFO] [stdout] test distributions::dist2d::tests_2d::test_from_fn ... ok [INFO] [stdout] test phylogeny::tree_parsers::tests::test_newick_initialization ... ok [INFO] [stdout] test phylogeny::tree_parsers::tests::test_newick_parse ... ok [INFO] [stdout] test transition::table::tests::test_matrix_exp ... ok [INFO] [stdout] test distributions::dist1d::tests_1d::test_integrate ... ok [INFO] [stdout] test transition::defs::tests::test_zero_mat ... ok [INFO] [stdout] test phylogeny::tree_iterators::tests::test_preorder ... ok [INFO] [stdout] test transition::table::tests::test_matrix_log ... ok [INFO] [stdout] test distributions::conv::tests::test_conv_2d ... ok [INFO] [stderr] Doc-tests bio_utils [INFO] [stdout] test distributions::dist2d::tests_2d::test_integrate ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 26 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.23s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "3a1f3996d9277264b71cbbf566846e6805d64a1f1880197f5dacd2b19d3fc68a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3a1f3996d9277264b71cbbf566846e6805d64a1f1880197f5dacd2b19d3fc68a", kill_on_drop: false }` [INFO] [stdout] 3a1f3996d9277264b71cbbf566846e6805d64a1f1880197f5dacd2b19d3fc68a