[INFO] cloning repository https://github.com/wdecoster/nanoget-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/wdecoster/nanoget-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwdecoster%2Fnanoget-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwdecoster%2Fnanoget-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] a2da7591e83b57ba14dcf8fb62eb726967b4aea3
[INFO] testing wdecoster/nanoget-rs against master#1ef7943ee607160a564655b6596f83670ef95df5 for pr-146098-6
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwdecoster%2Fnanoget-rs" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/wdecoster/nanoget-rs
[INFO] finished tweaking git repo https://github.com/wdecoster/nanoget-rs
[INFO] tweaked toml for git repo https://github.com/wdecoster/nanoget-rs written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/wdecoster/nanoget-rs on toolchain 1ef7943ee607160a564655b6596f83670ef95df5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/wdecoster/nanoget-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7f8d171353b898a9a532715cc68c6b84ad7eb0968eae3891870717363e2bc7c3
[INFO] running `Command { std: "docker" "start" "-a" "7f8d171353b898a9a532715cc68c6b84ad7eb0968eae3891870717363e2bc7c3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7f8d171353b898a9a532715cc68c6b84ad7eb0968eae3891870717363e2bc7c3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7f8d171353b898a9a532715cc68c6b84ad7eb0968eae3891870717363e2bc7c3", kill_on_drop: false }`
[INFO] [stdout] 7f8d171353b898a9a532715cc68c6b84ad7eb0968eae3891870717363e2bc7c3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 65faf2e962e071abfa30bf6ab52c0272da48ac493d54582d805bf2fabbb6465e
[INFO] running `Command { std: "docker" "start" "-a" "65faf2e962e071abfa30bf6ab52c0272da48ac493d54582d805bf2fabbb6465e", kill_on_drop: false }`
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[INFO] [stderr]    Compiling strum v0.26.3
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[INFO] [stderr]    Compiling iana-time-zone v0.1.64
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[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling flate2 v1.1.5
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[INFO] [stderr]    Compiling yoke-derive v0.8.0
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[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.17
[INFO] [stderr]    Compiling derive-new v0.6.0
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[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]    Compiling zerofrom v0.1.6
[INFO] [stderr]    Compiling yoke v0.8.0
[INFO] [stderr]    Compiling indicatif v0.18.2
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[INFO] [stderr]    Compiling zerotrie v0.2.2
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling clap v4.5.51
[INFO] [stderr]    Compiling tinystr v0.8.1
[INFO] [stderr]    Compiling potential_utf v0.1.3
[INFO] [stderr]    Compiling icu_collections v2.0.0
[INFO] [stderr]    Compiling icu_locale_core v2.0.0
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling chrono v0.4.42
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling env_logger v0.11.8
[INFO] [stderr]    Compiling icu_provider v2.0.0
[INFO] [stderr]    Compiling icu_properties v2.0.1
[INFO] [stderr]    Compiling icu_normalizer v2.0.0
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling url v2.5.7
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v3.0.0
[INFO] [stderr]    Compiling rust-htslib v0.51.0
[INFO] [stderr]    Compiling nanoget-rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 44s
[INFO] running `Command { std: "docker" "inspect" "65faf2e962e071abfa30bf6ab52c0272da48ac493d54582d805bf2fabbb6465e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "65faf2e962e071abfa30bf6ab52c0272da48ac493d54582d805bf2fabbb6465e", kill_on_drop: false }`
[INFO] [stdout] 65faf2e962e071abfa30bf6ab52c0272da48ac493d54582d805bf2fabbb6465e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 95d9576b7fc55375a4eb61df283e4af1089d49a122ba8387e5b15e62c04192cf
[INFO] running `Command { std: "docker" "start" "-a" "95d9576b7fc55375a4eb61df283e4af1089d49a122ba8387e5b15e62c04192cf", kill_on_drop: false }`
[INFO] [stderr]    Compiling regex-automata v0.4.10
[INFO] [stderr]    Compiling predicates-core v1.0.9
[INFO] [stderr]    Compiling rustix v1.1.2
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling float-cmp v0.10.0
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling assert_cmd v2.1.1
[INFO] [stderr]    Compiling bitflags v2.9.4
[INFO] [stderr]    Compiling termtree v0.5.1
[INFO] [stderr]    Compiling linux-raw-sys v0.11.0
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling fastrand v2.3.0
[INFO] [stderr]    Compiling predicates-tree v1.0.12
[INFO] [stderr]    Compiling tempfile v3.23.0
[INFO] [stderr]    Compiling regex v1.11.2
[INFO] [stderr]    Compiling bstr v1.12.0
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling env_filter v0.1.3
[INFO] [stderr]    Compiling predicates v3.1.3
[INFO] [stderr]    Compiling env_logger v0.11.8
[INFO] [stderr]    Compiling rust-htslib v0.51.0
[INFO] [stderr]    Compiling bio v3.0.0
[INFO] [stderr]    Compiling nanoget-rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 22.29s
[INFO] running `Command { std: "docker" "inspect" "95d9576b7fc55375a4eb61df283e4af1089d49a122ba8387e5b15e62c04192cf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "95d9576b7fc55375a4eb61df283e4af1089d49a122ba8387e5b15e62c04192cf", kill_on_drop: false }`
[INFO] [stdout] 95d9576b7fc55375a4eb61df283e4af1089d49a122ba8387e5b15e62c04192cf
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] e97dd53881149930b59efb375de48a3efdd2880ece757056942a556fd4507342
[INFO] running `Command { std: "docker" "start" "-a" "e97dd53881149930b59efb375de48a3efdd2880ece757056942a556fd4507342", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.37s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/nanoget_rs-72c8ab0282066260)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test extract::tests::test_rich_fastq_metadata_parsing ... ok
[INFO] [stdout] test metrics::tests::test_tsv_output ... ok
[INFO] [stdout] test utils::tests::test_average_quality ... ok
[INFO] [stdout] test utils::tests::test_compression_detection ... ok
[INFO] [stdout] test metrics::tests::test_read_metrics_builder ... ok
[INFO] [stdout] test utils::tests::test_percent_identity ... ok
[INFO] [stdout] test metrics::tests::test_stats_summary ... ok
[INFO] [stdout] test formats::tests::test_file_type_detection ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/nanoget-95fd2056c0d93af1)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test formats::tests::test_file_type_detection ... ok
[INFO] [stdout] test utils::tests::test_average_quality ... ok
[INFO] [stdout] test metrics::tests::test_tsv_output ... ok
[INFO] [stdout] test utils::tests::test_compression_detection ... ok
[INFO] [stdout] test utils::tests::test_percent_identity ... ok
[INFO] [stdout] test extract::tests::test_rich_fastq_metadata_parsing ... ok
[INFO] [stdout] test metrics::tests::test_read_metrics_builder ... ok
[INFO] [stdout] test metrics::tests::test_stats_summary ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/integration_tests.rs (/opt/rustwide/target/debug/deps/integration_tests-3fc7d48e8a535d23)
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test test_fastq_minimal ... ok
[INFO] [stdout] test test_fastq_extraction ... ok
[INFO] [stdout] test test_fasta_extraction ... ok
[INFO] [stdout] test test_tsv_output_format ... ok
[INFO] [stderr]      Running tests/library_api_tests.rs (/opt/rustwide/target/debug/deps/library_api_tests-4683d3ac4da491d2)
[INFO] [stdout] test test_multiple_files_combination ... ok
[INFO] [stdout] test test_track_combination ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test test_convenience_api ... ok
[INFO] [stdout] test test_dataset_functionality ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests nanoget_rs
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/lib.rs - (line 13) - compile ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.18s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "e97dd53881149930b59efb375de48a3efdd2880ece757056942a556fd4507342", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e97dd53881149930b59efb375de48a3efdd2880ece757056942a556fd4507342", kill_on_drop: false }`
[INFO] [stdout] e97dd53881149930b59efb375de48a3efdd2880ece757056942a556fd4507342