[INFO] cloning repository https://github.com/ARU-life-sciences/gfa_recomb
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/gfa_recomb" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fgfa_recomb", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fgfa_recomb'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] fe5fb3959c9710a376b8c65320ca4050742e251c
[INFO] testing ARU-life-sciences/gfa_recomb against master#1ef7943ee607160a564655b6596f83670ef95df5 for pr-146098-6
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fgfa_recomb" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ARU-life-sciences/gfa_recomb
[INFO] finished tweaking git repo https://github.com/ARU-life-sciences/gfa_recomb
[INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/gfa_recomb written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ARU-life-sciences/gfa_recomb on toolchain 1ef7943ee607160a564655b6596f83670ef95df5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ARU-life-sciences/gfa_recomb already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded once_cell v1.21.1
[INFO] [stderr]   Downloaded bytemuck_derive v1.9.2
[INFO] [stderr]   Downloaded nom v5.1.3
[INFO] [stderr]   Downloaded bstr v1.11.3
[INFO] [stderr]   Downloaded gfa v0.10.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a4008aec5f390b387fb4193542a371c52f221b43066662556d39af8ca25cf18c
[INFO] running `Command { std: "docker" "start" "-a" "a4008aec5f390b387fb4193542a371c52f221b43066662556d39af8ca25cf18c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a4008aec5f390b387fb4193542a371c52f221b43066662556d39af8ca25cf18c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a4008aec5f390b387fb4193542a371c52f221b43066662556d39af8ca25cf18c", kill_on_drop: false }`
[INFO] [stdout] a4008aec5f390b387fb4193542a371c52f221b43066662556d39af8ca25cf18c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9329445deefb2e6dd4aa75dd0efbcda2f6334b50e259e8fe23a174ba67060574
[INFO] running `Command { std: "docker" "start" "-a" "9329445deefb2e6dd4aa75dd0efbcda2f6334b50e259e8fe23a174ba67060574", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling anyhow v1.0.97
[INFO] [stderr]    Compiling anstyle v1.0.10
[INFO] [stderr]    Compiling colorchoice v1.0.3
[INFO] [stderr]    Compiling arrayvec v0.5.2
[INFO] [stderr]    Compiling nom v5.1.3
[INFO] [stderr]    Compiling anstyle-parse v0.2.6
[INFO] [stderr]    Compiling anstyle-query v1.1.2
[INFO] [stderr]    Compiling clap_lex v0.7.4
[INFO] [stderr]    Compiling memmap v0.7.0
[INFO] [stderr]    Compiling syn v2.0.100
[INFO] [stderr]    Compiling anstream v0.6.18
[INFO] [stderr]    Compiling clap_builder v4.5.32
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling bytemuck_derive v1.9.2
[INFO] [stderr]    Compiling clap v4.5.32
[INFO] [stderr]    Compiling bytemuck v1.22.0
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling bstr v1.11.3
[INFO] [stderr]    Compiling gfa v0.10.1
[INFO] [stderr]    Compiling gfa_recomb v0.2.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 15.17s
[INFO] running `Command { std: "docker" "inspect" "9329445deefb2e6dd4aa75dd0efbcda2f6334b50e259e8fe23a174ba67060574", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9329445deefb2e6dd4aa75dd0efbcda2f6334b50e259e8fe23a174ba67060574", kill_on_drop: false }`
[INFO] [stdout] 9329445deefb2e6dd4aa75dd0efbcda2f6334b50e259e8fe23a174ba67060574
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ea21aec3cae7aa0688286effa75daa8f3a236f9bba11b2aaf90d67cdc60dba45
[INFO] running `Command { std: "docker" "start" "-a" "ea21aec3cae7aa0688286effa75daa8f3a236f9bba11b2aaf90d67cdc60dba45", kill_on_drop: false }`
[INFO] [stderr]    Compiling gfa_recomb v0.2.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.31s
[INFO] running `Command { std: "docker" "inspect" "ea21aec3cae7aa0688286effa75daa8f3a236f9bba11b2aaf90d67cdc60dba45", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ea21aec3cae7aa0688286effa75daa8f3a236f9bba11b2aaf90d67cdc60dba45", kill_on_drop: false }`
[INFO] [stdout] ea21aec3cae7aa0688286effa75daa8f3a236f9bba11b2aaf90d67cdc60dba45
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] a27f11c5bd56d2d12e95c22c3b4af73857c1192e69a880c25220da12a26dc95f
[INFO] running `Command { std: "docker" "start" "-a" "a27f11c5bd56d2d12e95c22c3b4af73857c1192e69a880c25220da12a26dc95f", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/gfa_recomb-7f850e5aca7c952d)
[INFO] [stdout] 
[INFO] [stdout] running 14 tests
[INFO] [stdout] 
[INFO] [stdout] repeat_node	path_count	entropy
[INFO] [stdout] u66	3	1.522
[INFO] [stdout] 
[INFO] [stdout] Mean entropy: 1.522
[INFO] [stdout] Total entropy: 1.522
[INFO] [stdout] test gaf::tests::test_path_parse ... ok
[INFO] [stdout] test gaf::tests::test_is_reverse_2 ... ok
[INFO] [stdout] test gaf::tests::test_split_into_repeats_merges_by_repeat_id ... ok
[INFO] [stdout] test gaf::tests::test_is_reverse ... ok
[INFO] [stdout] test gaf::tests::test_compute_path_entropy_single_node ... ok
[INFO] [stdout] test gaf::tests::test_extract_middle_segment_invalid ... ok
[INFO] [stdout] test gaf::tests::test_compute_rci_empty ... ok
[INFO] [stdout] test gaf::tests::test_extract_middle_segment_valid ... ok
[INFO] [stdout] test gaf::tests::test_extract_repeat_info_mismatch ... ok
[INFO] [stdout] test gaf::tests::test_compute_rci_balanced ... ok
[INFO] [stdout] test gaf::tests::test_compute_rci_unbalanced ... ok
[INFO] [stdout] test gaf::tests::test_split_repeats_multiple ... ok
[INFO] [stdout] test gaf::tests::test_split_repeats ... ok
[INFO] [stdout] test gaf::tests::test_extract_repeat_info_valid_pair ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 14 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "a27f11c5bd56d2d12e95c22c3b4af73857c1192e69a880c25220da12a26dc95f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a27f11c5bd56d2d12e95c22c3b4af73857c1192e69a880c25220da12a26dc95f", kill_on_drop: false }`
[INFO] [stdout] a27f11c5bd56d2d12e95c22c3b4af73857c1192e69a880c25220da12a26dc95f
