[INFO] cloning repository https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/extract_nhmmer_tblout" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b463b611c347c1f23d68f2061296df531711728f
[INFO] testing ARU-life-sciences/extract_nhmmer_tblout against master#1ef7943ee607160a564655b6596f83670ef95df5 for pr-146098-6
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] finished tweaking git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout on toolchain 1ef7943ee607160a564655b6596f83670ef95df5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-bgzf v0.29.0
[INFO] [stderr]   Downloaded serde_derive v1.0.201
[INFO] [stderr]   Downloaded noodles-core v0.15.0
[INFO] [stderr]   Downloaded anyhow v1.0.82
[INFO] [stderr]   Downloaded serde v1.0.201
[INFO] [stderr]   Downloaded crossbeam-channel v0.5.12
[INFO] [stderr]   Downloaded syn v2.0.61
[INFO] [stderr]   Downloaded bstr v1.9.1
[INFO] [stderr]   Downloaded hmm_tblout v0.2.1
[INFO] [stderr]   Downloaded noodles-fasta v0.37.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 49ec369254eff9e6b376b610da37a5f1aa164cec30aa13b87a5969722375e4f5
[INFO] running `Command { std: "docker" "start" "-a" "49ec369254eff9e6b376b610da37a5f1aa164cec30aa13b87a5969722375e4f5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "49ec369254eff9e6b376b610da37a5f1aa164cec30aa13b87a5969722375e4f5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "49ec369254eff9e6b376b610da37a5f1aa164cec30aa13b87a5969722375e4f5", kill_on_drop: false }`
[INFO] [stdout] 49ec369254eff9e6b376b610da37a5f1aa164cec30aa13b87a5969722375e4f5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a450e0012fff1009f07d7347d8f72ee28c740feb071711b9dab8615f4333794d
[INFO] running `Command { std: "docker" "start" "-a" "a450e0012fff1009f07d7347d8f72ee28c740feb071711b9dab8615f4333794d", kill_on_drop: false }`
[INFO] [stderr]    Compiling crc32fast v1.4.0
[INFO] [stderr]    Compiling adler2 v2.0.1
[INFO] [stderr]    Compiling utf8parse v0.2.1
[INFO] [stderr]    Compiling anstyle v1.0.7
[INFO] [stderr]    Compiling colorchoice v1.0.1
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]    Compiling anstyle-query v1.0.3
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.0
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling clap_lex v0.7.0
[INFO] [stderr]    Compiling linux-raw-sys v0.4.13
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]    Compiling fastrand v2.1.0
[INFO] [stderr]    Compiling hmm_tblout v0.2.1
[INFO] [stderr]    Compiling crossbeam-channel v0.5.12
[INFO] [stderr]    Compiling anstyle-parse v0.2.4
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling anstream v0.6.14
[INFO] [stderr]    Compiling flate2 v1.1.2
[INFO] [stderr]    Compiling clap_builder v4.5.2
[INFO] [stderr]    Compiling bstr v1.9.1
[INFO] [stderr]    Compiling noodles-bgzf v0.29.0
[INFO] [stderr]    Compiling noodles-core v0.15.0
[INFO] [stderr]    Compiling noodles-fasta v0.37.0
[INFO] [stderr]    Compiling tempfile v3.10.1
[INFO] [stderr]    Compiling clap v4.5.4
[INFO] [stderr]    Compiling extract_nhmmer_tblout v0.1.31 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 8.35s
[INFO] running `Command { std: "docker" "inspect" "a450e0012fff1009f07d7347d8f72ee28c740feb071711b9dab8615f4333794d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a450e0012fff1009f07d7347d8f72ee28c740feb071711b9dab8615f4333794d", kill_on_drop: false }`
[INFO] [stdout] a450e0012fff1009f07d7347d8f72ee28c740feb071711b9dab8615f4333794d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d330a32f5b79fb5aef926dd77af15285d707ee271a6e52ca6fe73866e2e45602
[INFO] running `Command { std: "docker" "start" "-a" "d330a32f5b79fb5aef926dd77af15285d707ee271a6e52ca6fe73866e2e45602", kill_on_drop: false }`
[INFO] [stderr]    Compiling extract_nhmmer_tblout v0.1.31 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.73s
[INFO] running `Command { std: "docker" "inspect" "d330a32f5b79fb5aef926dd77af15285d707ee271a6e52ca6fe73866e2e45602", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d330a32f5b79fb5aef926dd77af15285d707ee271a6e52ca6fe73866e2e45602", kill_on_drop: false }`
[INFO] [stdout] d330a32f5b79fb5aef926dd77af15285d707ee271a6e52ca6fe73866e2e45602
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 73ba54b5df433e4911981cfaaf2e3972f110339539652acb5ea8d6d5702c0961
[INFO] running `Command { std: "docker" "start" "-a" "73ba54b5df433e4911981cfaaf2e3972f110339539652acb5ea8d6d5702c0961", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/extract_nhmmer_tblout-a7fdaace5cf0940e)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "73ba54b5df433e4911981cfaaf2e3972f110339539652acb5ea8d6d5702c0961", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "73ba54b5df433e4911981cfaaf2e3972f110339539652acb5ea8d6d5702c0961", kill_on_drop: false }`
[INFO] [stdout] 73ba54b5df433e4911981cfaaf2e3972f110339539652acb5ea8d6d5702c0961
