[INFO] cloning repository https://github.com/ARU-life-sciences/hmm_tblout
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/hmm_tblout" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fhmm_tblout", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fhmm_tblout'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] bd40a6d4da0c7f2a6e9a2e04603bc7753cf0cd4e
[INFO] testing ARU-life-sciences/hmm_tblout against try#9f93af291970322f4f1c6315ccde4d7078201159 for pr-146098-6
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fhmm_tblout" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ARU-life-sciences/hmm_tblout
[INFO] finished tweaking git repo https://github.com/ARU-life-sciences/hmm_tblout
[INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/hmm_tblout written to /workspace/builds/worker-7-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ARU-life-sciences/hmm_tblout on toolchain 9f93af291970322f4f1c6315ccde4d7078201159
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ARU-life-sciences/hmm_tblout already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b5b6def36a6789b56fd6e1ec6bacf31674d6b242d3ebe67664f657acddb057a4
[INFO] running `Command { std: "docker" "start" "-a" "b5b6def36a6789b56fd6e1ec6bacf31674d6b242d3ebe67664f657acddb057a4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b5b6def36a6789b56fd6e1ec6bacf31674d6b242d3ebe67664f657acddb057a4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b5b6def36a6789b56fd6e1ec6bacf31674d6b242d3ebe67664f657acddb057a4", kill_on_drop: false }`
[INFO] [stdout] b5b6def36a6789b56fd6e1ec6bacf31674d6b242d3ebe67664f657acddb057a4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7951c19745413be6b15ddc1a006ac26a84d960612ac98c2e35372e0a984667d4
[INFO] running `Command { std: "docker" "start" "-a" "7951c19745413be6b15ddc1a006ac26a84d960612ac98c2e35372e0a984667d4", kill_on_drop: false }`
[INFO] [stderr]    Compiling hmm_tblout v0.4.23 (/opt/rustwide/workdir)
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]    --> src/reader.rs:476:20
[INFO] [stdout]     |
[INFO] [stdout] 476 |     pub fn records(&mut self) -> RecordsIter<R> {
[INFO] [stdout]     |                    ^^^^^^^^^     ^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]     |                    |
[INFO] [stdout]     |                    the lifetime is elided here
[INFO] [stdout]     |
[INFO] [stdout]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]     |
[INFO] [stdout] 476 |     pub fn records(&mut self) -> RecordsIter<'_, R> {
[INFO] [stdout]     |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.37s
[INFO] running `Command { std: "docker" "inspect" "7951c19745413be6b15ddc1a006ac26a84d960612ac98c2e35372e0a984667d4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7951c19745413be6b15ddc1a006ac26a84d960612ac98c2e35372e0a984667d4", kill_on_drop: false }`
[INFO] [stdout] 7951c19745413be6b15ddc1a006ac26a84d960612ac98c2e35372e0a984667d4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d7a024f0f708c830054122f975ccffc6a903c40587c45403334eb53fb2b163b6
[INFO] running `Command { std: "docker" "start" "-a" "d7a024f0f708c830054122f975ccffc6a903c40587c45403334eb53fb2b163b6", kill_on_drop: false }`
[INFO] [stderr]    Compiling hmm_tblout v0.4.23 (/opt/rustwide/workdir)
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]    --> src/reader.rs:476:20
[INFO] [stdout]     |
[INFO] [stdout] 476 |     pub fn records(&mut self) -> RecordsIter<R> {
[INFO] [stdout]     |                    ^^^^^^^^^     ^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]     |                    |
[INFO] [stdout]     |                    the lifetime is elided here
[INFO] [stdout]     |
[INFO] [stdout]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]     |
[INFO] [stdout] 476 |     pub fn records(&mut self) -> RecordsIter<'_, R> {
[INFO] [stdout]     |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `NHMMSCAN_FILE` is never used
[INFO] [stdout]    --> src/lib.rs:140:11
[INFO] [stdout]     |
[INFO] [stdout] 140 |     const NHMMSCAN_FILE: &str = "# target name        accession  query name           accession  hmmfrom hmm to alifrom  ali to envfrom  ...
[INFO] [stdout]     |           ^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `HMMSCAN_FILE` is never used
[INFO] [stdout]    --> src/lib.rs:161:11
[INFO] [stdout]     |
[INFO] [stdout] 161 |     const HMMSCAN_FILE: &str = "#                                                               --- full sequence ---- --- best 1 domain ...
[INFO] [stdout]     |           ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `HMMSEARCH_FILE` is never used
[INFO] [stdout]    --> src/lib.rs:189:11
[INFO] [stdout]     |
[INFO] [stdout] 189 |     const HMMSEARCH_FILE: &str = "#                                                               --- full sequence ---- --- best 1 domai...
[INFO] [stdout]     |           ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]    --> src/reader.rs:476:20
[INFO] [stdout]     |
[INFO] [stdout] 476 |     pub fn records(&mut self) -> RecordsIter<R> {
[INFO] [stdout]     |                    ^^^^^^^^^     ^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]     |                    |
[INFO] [stdout]     |                    the lifetime is elided here
[INFO] [stdout]     |
[INFO] [stdout]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]     |
[INFO] [stdout] 476 |     pub fn records(&mut self) -> RecordsIter<'_, R> {
[INFO] [stdout]     |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.95s
[INFO] running `Command { std: "docker" "inspect" "d7a024f0f708c830054122f975ccffc6a903c40587c45403334eb53fb2b163b6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d7a024f0f708c830054122f975ccffc6a903c40587c45403334eb53fb2b163b6", kill_on_drop: false }`
[INFO] [stdout] d7a024f0f708c830054122f975ccffc6a903c40587c45403334eb53fb2b163b6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 139c9af032ecce2b55fc47f179f70fa0b71af613ac1984bccae0059450b106a4
[INFO] running `Command { std: "docker" "start" "-a" "139c9af032ecce2b55fc47f179f70fa0b71af613ac1984bccae0059450b106a4", kill_on_drop: false }`
[INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stderr]    --> src/reader.rs:476:20
[INFO] [stderr]     |
[INFO] [stderr] 476 |     pub fn records(&mut self) -> RecordsIter<R> {
[INFO] [stderr]     |                    ^^^^^^^^^     ^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stderr]     |                    |
[INFO] [stderr]     |                    the lifetime is elided here
[INFO] [stderr]     |
[INFO] [stderr]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stderr]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stderr] help: use `'_` for type paths
[INFO] [stderr]     |
[INFO] [stderr] 476 |     pub fn records(&mut self) -> RecordsIter<'_, R> {
[INFO] [stderr]     |                                              +++
[INFO] [stderr] 
[INFO] [stderr] warning: `hmm_tblout` (lib) generated 1 warning (run `cargo fix --lib -p hmm_tblout` to apply 1 suggestion)
[INFO] [stderr] warning: constant `NHMMSCAN_FILE` is never used
[INFO] [stderr]    --> src/lib.rs:140:11
[INFO] [stderr]     |
[INFO] [stderr] 140 |     const NHMMSCAN_FILE: &str = "# target name        accession  query name           accession  hmmfrom hmm to alifrom  ali to envfrom  ...
[INFO] [stderr]     |           ^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: constant `HMMSCAN_FILE` is never used
[INFO] [stderr]    --> src/lib.rs:161:11
[INFO] [stderr]     |
[INFO] [stderr] 161 |     const HMMSCAN_FILE: &str = "#                                                               --- full sequence ---- --- best 1 domain ...
[INFO] [stderr]     |           ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: constant `HMMSEARCH_FILE` is never used
[INFO] [stderr]    --> src/lib.rs:189:11
[INFO] [stderr]     |
[INFO] [stderr] 189 |     const HMMSEARCH_FILE: &str = "#                                                               --- full sequence ---- --- best 1 domai...
[INFO] [stderr]     |           ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `hmm_tblout` (lib test) generated 4 warnings (1 duplicate)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.03s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/hmm_tblout-8a0efce9e16691c1)
[INFO] [stdout] 
[INFO] [stdout] running 10 tests
[INFO] [stdout] test tests::test_header ... ok
[INFO] [stdout] test tests::test_jackhmmer_meta ... ok
[INFO] [stdout] test tests::test_meta ... ok
[INFO] [stdout] test tests::test_cmscan ... ok
[INFO] [stdout] test tests::test_phmmer_records ... ok
[INFO] [stdout] test tests::test_jackhmmer_records ... ok
[INFO] [stdout] test tests::test_whole_file ... ok
[INFO] [stdout] test tests::in_same_as_out_n ... FAILED
[INFO] [stdout] test tests::test_phmmer_write ... FAILED
[INFO] [stdout] test tests::in_same_as_out ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- tests::in_same_as_out_n stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'tests::in_same_as_out_n' (27) panicked at src/lib.rs:353:9:
[INFO] [stdout] assertion `left == right` failed
[INFO] [stdout]   left: "# target name        accession  query name           accession  hmmfrom hmm to  alifrom   ali to  envfrom   env to   sq len strand   E-value  score  bias  description of target\n#------------------- ---------- -------------------- ---------- ------- -------  -------  -------  -------  -------  ------- ------ --------- ------ ----- ---------------------\nSUPER_1              -          TR                   -                1     315 10988331 10987997 10988331 10987995 52766903   -      6.5e-34  124.1   1.2 -                    \nSUPER_3              -          TR                   -              139     204 17951382 17951472 17951359 17951492 49366223   +       7.4e-1   15.6     3 -                    \nSUPER_4              -          TR                   -               29     130 20542008 20542119 20541989 20542141 47284787   +        1.1e0   15.1   5.7 -                    \nSUPER_4              -          TR                   -               29     126 32993383 32993283 32993398 32993263 47284787   -        2.2e0   14.1     1 -                    \nSUPER_4              -          TR                   -               23     126 14861076 14861174 14861063 14861195 47284787   +        2.4e0   13.9   3.4 -                    \nSUPER_5              -          TR                   -               21     126 27641355 27641256 27641369 27641229 46997258   -        2.5e0   13.8   6.5 -                    \nSUPER_8              -          TR                   -              158     191 33162494 33162454 33162514 33162446 33878543   -        3.1e0   13.6     2 -                    \nSUPER_5              -          TR                   -              107     162 46228956 46228885 46228975 46228876 46997258   -        3.1e0   13.6     0 -                    \nSUPER_1              -          TR                   -               68     173 15697438 15697327 15697464 15697325 52766903   -        4.4e0   13.1   0.7 -                    \nSUPER_3              -          TR                   -               24     128 36147201 36147098 36147221 36147078 49366223   -        4.5e0     13   1.9 -                    \nSUPER_1              -          TR                   -                1      84 36988055 36987966 36988055 36987944 52766903   -        4.7e0     13   2.1 -                    \nSUPER_6              -          TR                   -               38     122 20863320 20863225 20863338 20863202 43664244   -          5e0   12.9   2.2 -                    \nSUPER_8              -          TR                   -                1      79 32349659 32349576 32349659 32349556 33878543   -        5.9e0   12.6   2.5 -                    \nSUPER_2              -          TR                   -               22     128 38320620 38320502 38320631 38320480 52745556   -        6.5e0   12.5     0 -                    \nSUPER_1              -          TR                   -                2      55  1602497  1602446  1602498  1602420 52766903   -        8.6e0   12.1   7.2 -                    \nSUPER_2              -          TR                   -                2     100 26735237 26735139 26735238 26735122 52745556   -          9e0     12   1.4 -                    \n#\n# Program:         nhmmer\n# Version:         3.4 (Aug 2023)\n# Pipeline mode:   SEARCH\n# Query file:      TR.hmm\n# Target file:     /lustre/scratch124/tol/projects/darwin/data/dicots/Misopates_orontium/assembly/curated/daMisOron1.1/daMisOron1.1.primary.fa.gz\n# Options:         /software/team301/hmmer-3.4/src/nhmmer --tblout Misopates_orontium.tbl --dna --cpu 10 TR.hmm /lustre/scratch124/tol/projects/darwin/data/dicots/Misopates_orontium/assembly/curated/daMisOron1.1/daMisOron1.1.primary.fa.gz\n# Current dir:     /lustre/scratch123/tol/teams/blaxter/users/mb39/ARU/tr_detection\n# Date:            Fri May  3 10:07:36 2024\n# [ok]"
[INFO] [stdout]  right: "# target name        accession  query name           accession  hmmfrom hmm to  alifrom   ali to  envfrom   env to   sq len strand   E-value  score  bias  description of target\n#------------------- ---------- -------------------- ---------- ------- -------  -------  -------  -------  -------  ------- ------ --------- ------ ----- ---------------------\nSUPER_1              -          TR                   -                1     315 10988331 10987997 10988331 10987995 52766903    -     6.5e-34  124.1   1.2  -\nSUPER_3              -          TR                   -              139     204 17951382 17951472 17951359 17951492 49366223    +        0.74   15.6   3.0  -\nSUPER_4              -          TR                   -               29     130 20542008 20542119 20541989 20542141 47284787    +         1.1   15.1   5.7  -\nSUPER_4              -          TR                   -               29     126 32993383 32993283 32993398 32993263 47284787    -         2.2   14.1   1.0  -\nSUPER_4              -          TR                   -               23     126 14861076 14861174 14861063 14861195 47284787    +         2.4   13.9   3.4  -\nSUPER_5              -          TR                   -               21     126 27641355 27641256 27641369 27641229 46997258    -         2.5   13.8   6.5  -\nSUPER_8              -          TR                   -              158     191 33162494 33162454 33162514 33162446 33878543    -         3.1   13.6   2.0  -\nSUPER_5              -          TR                   -              107     162 46228956 46228885 46228975 46228876 46997258    -         3.1   13.6   0.0  -\nSUPER_1              -          TR                   -               68     173 15697438 15697327 15697464 15697325 52766903    -         4.4   13.1   0.7  -\nSUPER_3              -          TR                   -               24     128 36147201 36147098 36147221 36147078 49366223    -         4.5   13.0   1.9  -\nSUPER_1              -          TR                   -                1      84 36988055 36987966 36988055 36987944 52766903    -         4.7   13.0   2.1  -\nSUPER_6              -          TR                   -               38     122 20863320 20863225 20863338 20863202 43664244    -           5   12.9   2.2  -\nSUPER_8              -          TR                   -                1      79 32349659 32349576 32349659 32349556 33878543    -         5.9   12.6   2.5  -\nSUPER_2              -          TR                   -               22     128 38320620 38320502 38320631 38320480 52745556    -         6.5   12.5   0.0  -\nSUPER_1              -          TR                   -                2      55  1602497  1602446  1602498  1602420 52766903    -         8.6   12.1   7.2  -\nSUPER_2              -          TR                   -                2     100 26735237 26735139 26735238 26735122 52745556    -           9   12.0   1.4  -\n#\n# Program:         nhmmer\n# Version:         3.4 (Aug 2023)\n# Pipeline mode:   SEARCH\n# Query file:      TR.hmm\n# Target file:     /lustre/scratch124/tol/projects/darwin/data/dicots/Misopates_orontium/assembly/curated/daMisOron1.1/daMisOron1.1.primary.fa.gz\n# Option settings: /software/team301/hmmer-3.4/src/nhmmer --tblout Misopates_orontium.tbl --dna --cpu 10 TR.hmm /lustre/scratch124/tol/projects/darwin/data/dicots/Misopates_orontium/assembly/curated/daMisOron1.1/daMisOron1.1.primary.fa.gz\n# Current dir:     /lustre/scratch123/tol/teams/blaxter/users/mb39/ARU/tr_detection\n# Date:            Fri May  3 10:07:36 2024\n# [ok]"
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x64232e9e7a42 - std::backtrace_rs::backtrace::libunwind::trace::h16affffe904e891e
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x64232e9e7a42 - std::backtrace_rs::backtrace::trace_unsynchronized::h5c14b13373ed4150
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x64232e9e7a42 - std::sys::backtrace::_print_fmt::hcbb507f162c816cc
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:66:9
[INFO] [stdout]    3:     0x64232e9e7a42 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h8be9aa933f14675f
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:39:26
[INFO] [stdout]    4:     0x64232e9f8a1f - core::fmt::rt::Argument::fmt::h30ed739d33467c3a
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/fmt/rt.rs:173:76
[INFO] [stdout]    5:     0x64232e9f8a1f - core::fmt::write::hfd0efbb002ac7eea
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/fmt/mod.rs:1469:25
[INFO] [stdout]    6:     0x64232e9b54c3 - std::io::default_write_fmt::hd6d24501f2d7f8d3
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x64232e9b54c3 - std::io::Write::write_fmt::h79eca2f72fc24111
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/io/mod.rs:1954:13
[INFO] [stdout]    8:     0x64232e9c12a2 - std::sys::backtrace::BacktraceLock::print::hf2554f6030d393f7
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:42:9
[INFO] [stdout]    9:     0x64232e9c5d7f - std::panicking::default_hook::{{closure}}::h8873121c56335b01
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:301:27
[INFO] [stdout]   10:     0x64232e9c5c11 - std::panicking::default_hook::hbafefc2d196267a2
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:325:9
[INFO] [stdout]   11:     0x64232e988d3e - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::ha834d5846f91b30b
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/alloc/src/boxed.rs:2099:9
[INFO] [stdout]   12:     0x64232e988d3e - test::test_main_with_exit_callback::{{closure}}::h63c167737eecb025
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x64232e9c638f - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hbf9b0f7a281291fd
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/alloc/src/boxed.rs:2099:9
[INFO] [stdout]   14:     0x64232e9c638f - std::panicking::panic_with_hook::h9f5b09d5adc1a745
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:842:13
[INFO] [stdout]   15:     0x64232e9c61ea - std::panicking::panic_handler::{{closure}}::h08111e483bdf6a89
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:707:13
[INFO] [stdout]   16:     0x64232e9c13d9 - std::sys::backtrace::__rust_end_short_backtrace::h1b86e3414ecbbe8d
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:174:18
[INFO] [stdout]   17:     0x64232e9a9c2d - __rustc[b292c645e8102103]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:698:5
[INFO] [stdout]   18:     0x64232ea01a30 - core::panicking::panic_fmt::h31cc490ecc8cc1fa
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panicking.rs:80:14
[INFO] [stdout]   19:     0x64232ea01833 - core::panicking::assert_failed_inner::h865658b89c1b891d
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panicking.rs:444:17
[INFO] [stdout]   20:     0x64232e94af9c - core::panicking::assert_failed::h75fefefb4e550242
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panicking.rs:399:5
[INFO] [stdout]   21:     0x64232e95b606 - hmm_tblout::tests::in_same_as_out_n::hb5db4df7eba01588
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:353:9
[INFO] [stdout]   22:     0x64232e95b7d7 - hmm_tblout::tests::in_same_as_out_n::{{closure}}::h9354aabe7adbd4bc
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:335:26
[INFO] [stdout]   23:     0x64232e960846 - core::ops::function::FnOnce::call_once::h84ba696d8f55f6c0
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   24:     0x64232e988b3b - core::ops::function::FnOnce::call_once::h2b2de5fdd23aab3e
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   25:     0x64232e988b3b - test::__rust_begin_short_backtrace::he551dd004770be01
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:663:18
[INFO] [stdout]   26:     0x64232e99cb9d - test::run_test_in_process::{{closure}}::h5f0b44080a35ed87
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:686:74
[INFO] [stdout]   27:     0x64232e99cb9d - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h4dbf65d14893ecf5
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   28:     0x64232e99cb9d - std::panicking::catch_unwind::do_call::hc37c563b8a006285
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:590:40
[INFO] [stdout]   29:     0x64232e99cb9d - std::panicking::catch_unwind::h616b6e2e7a27f612
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:553:19
[INFO] [stdout]   30:     0x64232e99cb9d - std::panic::catch_unwind::h1e788dd57758e6d8
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panic.rs:359:14
[INFO] [stdout]   31:     0x64232e99cb9d - test::run_test_in_process::hf073c2764f29f8ad
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:686:27
[INFO] [stdout]   32:     0x64232e99cb9d - test::run_test::{{closure}}::h3dc46b7a0c340fa6
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:607:43
[INFO] [stdout]   33:     0x64232e9760e4 - test::run_test::{{closure}}::h6a4da3c57ef4505f
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:637:41
[INFO] [stdout]   34:     0x64232e9760e4 - std::sys::backtrace::__rust_begin_short_backtrace::hfd8e44bc311a5d57
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:158:18
[INFO] [stdout]   35:     0x64232e97993a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h57c4ddec344fe24c
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/thread/mod.rs:562:17
[INFO] [stdout]   36:     0x64232e97993a - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hd7cbe09591f06dfb
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   37:     0x64232e97993a - std::panicking::catch_unwind::do_call::hdcd076e8e993dfbc
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:590:40
[INFO] [stdout]   38:     0x64232e97993a - std::panicking::catch_unwind::h8f9f675f3756eab1
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:553:19
[INFO] [stdout]   39:     0x64232e97993a - std::panic::catch_unwind::he8f74a93abeceb9b
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panic.rs:359:14
[INFO] [stdout]   40:     0x64232e97993a - std::thread::Builder::spawn_unchecked_::{{closure}}::he43db13a2caa41d5
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/thread/mod.rs:560:30
[INFO] [stdout]   41:     0x64232e97993a - core::ops::function::FnOnce::call_once{{vtable.shim}}::h8f3531a7e0d83514
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   42:     0x64232e9bc7df - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h6ff05134d80ef20e
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/alloc/src/boxed.rs:2085:9
[INFO] [stdout]   43:     0x64232e9bc7df - std::sys::thread::unix::Thread::new::thread_start::h9a4a41a076a486e0
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/thread/unix.rs:124:17
[INFO] [stdout]   44:     0x71c231b1eaa4 - <unknown>
[INFO] [stdout]   45:     0x71c231baba64 - clone
[INFO] [stdout]   46:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] ---- tests::test_phmmer_write stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'tests::test_phmmer_write' (34) panicked at src/lib.rs:300:9:
[INFO] [stdout] assertion `left == right` failed
[INFO] [stdout]   left: "HBB_HUMAN            -          MYG_ESCGI            -            2.3e-11   30.3   0.1   2.5e-11   30.2   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\n"
[INFO] [stdout]  right: "HBB_HUMAN       -          MYG_ESCGI       -            2.30e-11  30.30  0.10   2.50e-11  30.20  0.10  1.00   1   0   0   1   1   1   1 Human beta hemoglobin.\n"
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x64232e9e7a42 - std::backtrace_rs::backtrace::libunwind::trace::h16affffe904e891e
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x64232e9e7a42 - std::backtrace_rs::backtrace::trace_unsynchronized::h5c14b13373ed4150
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x64232e9e7a42 - std::sys::backtrace::_print_fmt::hcbb507f162c816cc
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:66:9
[INFO] [stdout]    3:     0x64232e9e7a42 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h8be9aa933f14675f
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:39:26
[INFO] [stdout]    4:     0x64232e9f8a1f - core::fmt::rt::Argument::fmt::h30ed739d33467c3a
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/fmt/rt.rs:173:76
[INFO] [stdout]    5:     0x64232e9f8a1f - core::fmt::write::hfd0efbb002ac7eea
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/fmt/mod.rs:1469:25
[INFO] [stdout]    6:     0x64232e9b54c3 - std::io::default_write_fmt::hd6d24501f2d7f8d3
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x64232e9b54c3 - std::io::Write::write_fmt::h79eca2f72fc24111
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/io/mod.rs:1954:13
[INFO] [stdout]    8:     0x64232e9c12a2 - std::sys::backtrace::BacktraceLock::print::hf2554f6030d393f7
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:42:9
[INFO] [stdout]    9:     0x64232e9c5d7f - std::panicking::default_hook::{{closure}}::h8873121c56335b01
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:301:27
[INFO] [stdout]   10:     0x64232e9c5c11 - std::panicking::default_hook::hbafefc2d196267a2
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:325:9
[INFO] [stdout]   11:     0x64232e988d3e - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::ha834d5846f91b30b
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/alloc/src/boxed.rs:2099:9
[INFO] [stdout]   12:     0x64232e988d3e - test::test_main_with_exit_callback::{{closure}}::h63c167737eecb025
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x64232e9c638f - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hbf9b0f7a281291fd
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/alloc/src/boxed.rs:2099:9
[INFO] [stdout]   14:     0x64232e9c638f - std::panicking::panic_with_hook::h9f5b09d5adc1a745
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:842:13
[INFO] [stdout]   15:     0x64232e9c61ea - std::panicking::panic_handler::{{closure}}::h08111e483bdf6a89
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:707:13
[INFO] [stdout]   16:     0x64232e9c13d9 - std::sys::backtrace::__rust_end_short_backtrace::h1b86e3414ecbbe8d
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:174:18
[INFO] [stdout]   17:     0x64232e9a9c2d - __rustc[b292c645e8102103]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:698:5
[INFO] [stdout]   18:     0x64232ea01a30 - core::panicking::panic_fmt::h31cc490ecc8cc1fa
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panicking.rs:80:14
[INFO] [stdout]   19:     0x64232ea01833 - core::panicking::assert_failed_inner::h865658b89c1b891d
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panicking.rs:444:17
[INFO] [stdout]   20:     0x64232e94af9c - core::panicking::assert_failed::h75fefefb4e550242
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panicking.rs:399:5
[INFO] [stdout]   21:     0x64232e95bf80 - hmm_tblout::tests::test_phmmer_write::he83a3b83c2d208c2
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:300:9
[INFO] [stdout]   22:     0x64232e95c007 - hmm_tblout::tests::test_phmmer_write::{{closure}}::h32aeec8909f29506
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:285:27
[INFO] [stdout]   23:     0x64232e960806 - core::ops::function::FnOnce::call_once::h833eb8cc7b950503
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   24:     0x64232e988b3b - core::ops::function::FnOnce::call_once::h2b2de5fdd23aab3e
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   25:     0x64232e988b3b - test::__rust_begin_short_backtrace::he551dd004770be01
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:663:18
[INFO] [stdout]   26:     0x64232e99cb9d - test::run_test_in_process::{{closure}}::h5f0b44080a35ed87
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:686:74
[INFO] [stdout]   27:     0x64232e99cb9d - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h4dbf65d14893ecf5
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   28:     0x64232e99cb9d - std::panicking::catch_unwind::do_call::hc37c563b8a006285
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:590:40
[INFO] [stdout]   29:     0x64232e99cb9d - std::panicking::catch_unwind::h616b6e2e7a27f612
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:553:19
[INFO] [stdout]   30:     0x64232e99cb9d - std::panic::catch_unwind::h1e788dd57758e6d8
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panic.rs:359:14
[INFO] [stdout]   31:     0x64232e99cb9d - test::run_test_in_process::hf073c2764f29f8ad
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:686:27
[INFO] [stdout]   32:     0x64232e99cb9d - test::run_test::{{closure}}::h3dc46b7a0c340fa6
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:607:43
[INFO] [stdout]   33:     0x64232e9760e4 - test::run_test::{{closure}}::h6a4da3c57ef4505f
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:637:41
[INFO] [stdout]   34:     0x64232e9760e4 - std::sys::backtrace::__rust_begin_short_backtrace::hfd8e44bc311a5d57
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:158:18
[INFO] [stdout]   35:     0x64232e97993a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h57c4ddec344fe24c
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/thread/mod.rs:562:17
[INFO] [stdout]   36:     0x64232e97993a - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hd7cbe09591f06dfb
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   37:     0x64232e97993a - std::panicking::catch_unwind::do_call::hdcd076e8e993dfbc
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:590:40
[INFO] [stdout]   38:     0x64232e97993a - std::panicking::catch_unwind::h8f9f675f3756eab1
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:553:19
[INFO] [stdout]   39:     0x64232e97993a - std::panic::catch_unwind::he8f74a93abeceb9b
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panic.rs:359:14
[INFO] [stdout]   40:     0x64232e97993a - std::thread::Builder::spawn_unchecked_::{{closure}}::he43db13a2caa41d5
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/thread/mod.rs:560:30
[INFO] [stdout]   41:     0x64232e97993a - core::ops::function::FnOnce::call_once{{vtable.shim}}::h8f3531a7e0d83514
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   42:     0x64232e9bc7df - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h6ff05134d80ef20e
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/alloc/src/boxed.rs:2085:9
[INFO] [stdout]   43:     0x64232e9bc7df - std::sys::thread::unix::Thread::new::thread_start::h9a4a41a076a486e0
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/thread/unix.rs:124:17
[INFO] [stdout]   44:     0x71c231b1eaa4 - <unknown>
[INFO] [stdout]   45:     0x71c231baba64 - clone
[INFO] [stdout]   46:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] ---- tests::in_same_as_out stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'tests::in_same_as_out' (26) panicked at src/lib.rs:327:9:
[INFO] [stdout] assertion `left == right` failed
[INFO] [stdout]   left: "#                                                               --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----\n# target name        accession  query name           accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target\n#------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------\nHBB_HUMAN            -          MYG_ESCGI            -            2.3e-11   30.3   0.1   2.5e-11   30.2   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          MYG_HORSE            -            5.1e-12   32.3   0.1   6.1e-12   32.1   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          MYG_PROGU            -            9.3e-13   34.6     0   1.1e-12   34.4     0   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          MYG_SAISC            -            7.4e-13   35.1     0     8e-13     35     0   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB_LARRI            -                0e0  222.2   0.1       0e0    222   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB1_VAREX           -                0e0  210.6   0.2       0e0  210.5   0.2   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB2_XENTR           -                0e0  163.9   0.1       0e0  163.7   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBBL_RANCA           -                0e0    180   0.1       0e0  179.9   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB2_TRICR           -                0e0    143     0       0e0  142.8     0   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\n#\n# Program:         phmmer\n# Version:         3.2 (June 2018)\n# Pipeline mode:   SEARCH\n# Query file:      /var/lib/cwl/stgc72dd3bc-8891-4b83-83e7-215178692be8/globins45.fa\n# Target file:     /var/lib/cwl/stgf46f4fb0-f7ec-4fbf-b608-74ca6d8a20a0/HBB_HUMAN\n# Options:         phmmer -o globins45.fa.phmmer_matches.out --tblout globins45.fa.phmmer_matches.tblout /var/lib/cwl/stgc72dd3bc-8891-4b83-83e7-215178692be8/globins45.fa /var/lib/cwl/stgf46f4fb0-f7ec-4fbf-b608-74ca6d8a20a0/HBB_HUMAN\n# Current dir:     /tmp/cwl\n# Date:            Tue Jul 17 13:01:19 2018\n# [ok]"
[INFO] [stdout]  right: "#                                                               --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----\n# target name        accession  query name           accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target\n#------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------\nHBB_HUMAN            -          MYG_ESCGI            -            2.3e-11   30.3   0.1   2.5e-11   30.2   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          MYG_HORSE            -            5.1e-12   32.3   0.1   6.1e-12   32.1   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          MYG_PROGU            -            9.3e-13   34.6   0.0   1.1e-12   34.4   0.0   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          MYG_SAISC            -            7.4e-13   35.1   0.0     8e-13   35.0   0.0   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB_LARRI            -            1.5e-70  222.2   0.1   1.6e-70  222.0   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB1_VAREX           -              7e-67  210.6   0.2   7.7e-67  210.5   0.2   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB2_XENTR           -            1.2e-52  163.9   0.1   1.4e-52  163.7   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBBL_RANCA           -            1.5e-57  180.0   0.1   1.7e-57  179.9   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB2_TRICR           -            3.4e-46  143.0   0.0   3.7e-46  142.8   0.0   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\n#\n# Program:         phmmer\n# Version:         3.2 (June 2018)\n# Pipeline mode:   SEARCH\n# Query file:      /var/lib/cwl/stgc72dd3bc-8891-4b83-83e7-215178692be8/globins45.fa\n# Target file:     /var/lib/cwl/stgf46f4fb0-f7ec-4fbf-b608-74ca6d8a20a0/HBB_HUMAN\n# Option settings: phmmer -o globins45.fa.phmmer_matches.out --tblout globins45.fa.phmmer_matches.tblout /var/lib/cwl/stgc72dd3bc-8891-4b83-83e7-215178692be8/globins45.fa /var/lib/cwl/stgf46f4fb0-f7ec-4fbf-b608-74ca6d8a20a0/HBB_HUMAN \n# Current dir:     /tmp/cwl\n# Date:            Tue Jul 17 13:01:19 2018\n# [ok]"
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x64232e9e7a42 - std::backtrace_rs::backtrace::libunwind::trace::h16affffe904e891e
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x64232e9e7a42 - std::backtrace_rs::backtrace::trace_unsynchronized::h5c14b13373ed4150
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x64232e9e7a42 - std::sys::backtrace::_print_fmt::hcbb507f162c816cc
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:66:9
[INFO] [stdout]    3:     0x64232e9e7a42 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h8be9aa933f14675f
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:39:26
[INFO] [stdout]    4:     0x64232e9f8a1f - core::fmt::rt::Argument::fmt::h30ed739d33467c3a
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/fmt/rt.rs:173:76
[INFO] [stdout]    5:     0x64232e9f8a1f - core::fmt::write::hfd0efbb002ac7eea
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/fmt/mod.rs:1469:25
[INFO] [stdout]    6:     0x64232e9b54c3 - std::io::default_write_fmt::hd6d24501f2d7f8d3
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x64232e9b54c3 - std::io::Write::write_fmt::h79eca2f72fc24111
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/io/mod.rs:1954:13
[INFO] [stdout]    8:     0x64232e9c12a2 - std::sys::backtrace::BacktraceLock::print::hf2554f6030d393f7
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:42:9
[INFO] [stdout]    9:     0x64232e9c5d7f - std::panicking::default_hook::{{closure}}::h8873121c56335b01
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:301:27
[INFO] [stdout]   10:     0x64232e9c5c11 - std::panicking::default_hook::hbafefc2d196267a2
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:325:9
[INFO] [stdout]   11:     0x64232e988d3e - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::ha834d5846f91b30b
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/alloc/src/boxed.rs:2099:9
[INFO] [stdout]   12:     0x64232e988d3e - test::test_main_with_exit_callback::{{closure}}::h63c167737eecb025
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x64232e9c638f - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hbf9b0f7a281291fd
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/alloc/src/boxed.rs:2099:9
[INFO] [stdout]   14:     0x64232e9c638f - std::panicking::panic_with_hook::h9f5b09d5adc1a745
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:842:13
[INFO] [stdout]   15:     0x64232e9c61ea - std::panicking::panic_handler::{{closure}}::h08111e483bdf6a89
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:707:13
[INFO] [stdout]   16:     0x64232e9c13d9 - std::sys::backtrace::__rust_end_short_backtrace::h1b86e3414ecbbe8d
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:174:18
[INFO] [stdout]   17:     0x64232e9a9c2d - __rustc[b292c645e8102103]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:698:5
[INFO] [stdout]   18:     0x64232ea01a30 - core::panicking::panic_fmt::h31cc490ecc8cc1fa
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panicking.rs:80:14
[INFO] [stdout]   19:     0x64232ea01833 - core::panicking::assert_failed_inner::h865658b89c1b891d
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panicking.rs:444:17
[INFO] [stdout]   20:     0x64232e94af9c - core::panicking::assert_failed::h75fefefb4e550242
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panicking.rs:399:5
[INFO] [stdout]   21:     0x64232e95a645 - hmm_tblout::tests::in_same_as_out::heef62b16ce1a66b3
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:327:9
[INFO] [stdout]   22:     0x64232e95a817 - hmm_tblout::tests::in_same_as_out::{{closure}}::he313fa774e354d57
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:309:24
[INFO] [stdout]   23:     0x64232e9608c6 - core::ops::function::FnOnce::call_once::hdb074b2bb2a2eaff
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   24:     0x64232e988b3b - core::ops::function::FnOnce::call_once::h2b2de5fdd23aab3e
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   25:     0x64232e988b3b - test::__rust_begin_short_backtrace::he551dd004770be01
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:663:18
[INFO] [stdout]   26:     0x64232e99cb9d - test::run_test_in_process::{{closure}}::h5f0b44080a35ed87
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:686:74
[INFO] [stdout]   27:     0x64232e99cb9d - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h4dbf65d14893ecf5
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   28:     0x64232e99cb9d - std::panicking::catch_unwind::do_call::hc37c563b8a006285
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:590:40
[INFO] [stdout]   29:     0x64232e99cb9d - std::panicking::catch_unwind::h616b6e2e7a27f612
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:553:19
[INFO] [stdout]   30:     0x64232e99cb9d - std::panic::catch_unwind::h1e788dd57758e6d8
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panic.rs:359:14
[INFO] [stdout]   31:     0x64232e99cb9d - test::run_test_in_process::hf073c2764f29f8ad
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:686:27
[INFO] [stdout]   32:     0x64232e99cb9d - test::run_test::{{closure}}::h3dc46b7a0c340fa6
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:607:43
[INFO] [stdout]   33:     0x64232e9760e4 - test::run_test::{{closure}}::h6a4da3c57ef4505f
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/test/src/lib.rs:637:41
[INFO] [stdout]   34:     0x64232e9760e4 - std::sys::backtrace::__rust_begin_short_backtrace::hfd8e44bc311a5d57
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/backtrace.rs:158:18
[INFO] [stdout]   35:     0x64232e97993a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h57c4ddec344fe24c
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/thread/mod.rs:562:17
[INFO] [stdout]   36:     0x64232e97993a - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hd7cbe09591f06dfb
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   37:     0x64232e97993a - std::panicking::catch_unwind::do_call::hdcd076e8e993dfbc
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:590:40
[INFO] [stdout]   38:     0x64232e97993a - std::panicking::catch_unwind::h8f9f675f3756eab1
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panicking.rs:553:19
[INFO] [stdout]   39:     0x64232e97993a - std::panic::catch_unwind::he8f74a93abeceb9b
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/panic.rs:359:14
[INFO] [stdout]   40:     0x64232e97993a - std::thread::Builder::spawn_unchecked_::{{closure}}::he43db13a2caa41d5
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/thread/mod.rs:560:30
[INFO] [stdout]   41:     0x64232e97993a - core::ops::function::FnOnce::call_once{{vtable.shim}}::h8f3531a7e0d83514
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   42:     0x64232e9bc7df - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h6ff05134d80ef20e
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/alloc/src/boxed.rs:2085:9
[INFO] [stdout]   43:     0x64232e9bc7df - std::sys::thread::unix::Thread::new::thread_start::h9a4a41a076a486e0
[INFO] [stdout]                                at /rustc/9f93af291970322f4f1c6315ccde4d7078201159/library/std/src/sys/thread/unix.rs:124:17
[INFO] [stdout]   44:     0x71c231b1eaa4 - <unknown>
[INFO] [stdout]   45:     0x71c231baba64 - clone
[INFO] [stdout]   46:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     tests::in_same_as_out
[INFO] [stdout]     tests::in_same_as_out_n
[INFO] [stdout]     tests::test_phmmer_write
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 7 passed; 3 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] running `Command { std: "docker" "inspect" "139c9af032ecce2b55fc47f179f70fa0b71af613ac1984bccae0059450b106a4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "139c9af032ecce2b55fc47f179f70fa0b71af613ac1984bccae0059450b106a4", kill_on_drop: false }`
[INFO] [stdout] 139c9af032ecce2b55fc47f179f70fa0b71af613ac1984bccae0059450b106a4
