[INFO] cloning repository https://github.com/Adoni5/cnv_from_bam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Adoni5/cnv_from_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c537c911efb519f10579a1dab8612025edf0c1ad
[INFO] testing Adoni5/cnv_from_bam against master#1ef7943ee607160a564655b6596f83670ef95df5 for pr-146098-6
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/Adoni5/cnv_from_bam
[INFO] finished tweaking git repo https://github.com/Adoni5/cnv_from_bam
[INFO] tweaked toml for git repo https://github.com/Adoni5/cnv_from_bam written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/Adoni5/cnv_from_bam on toolchain 1ef7943ee607160a564655b6596f83670ef95df5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 91 packages to latest Rust 1.93.0-nightly compatible versions
[INFO] [stderr]       Adding noodles v0.99.0 (available: v0.101.0)
[INFO] [stderr]       Adding noodles-bgzf v0.41.0 (available: v0.43.0)
[INFO] [stderr]       Adding pyo3 v0.25.1 (available: v0.27.1)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded indoc v2.0.7
[INFO] [stderr]   Downloaded unindent v0.2.4
[INFO] [stderr]   Downloaded noodles-core v0.17.0
[INFO] [stderr]   Downloaded natord v1.0.9
[INFO] [stderr]   Downloaded pyo3-macros v0.25.1
[INFO] [stderr]   Downloaded target-lexicon v0.13.3
[INFO] [stderr]   Downloaded ctrlc v3.5.1
[INFO] [stderr]   Downloaded lexical-core v1.0.6
[INFO] [stderr]   Downloaded lexical-parse-integer v1.0.6
[INFO] [stderr]   Downloaded noodles-csi v0.49.0
[INFO] [stderr]   Downloaded indicatif v0.18.2
[INFO] [stderr]   Downloaded noodles-bam v0.81.0
[INFO] [stderr]   Downloaded lexical-write-float v1.0.6
[INFO] [stderr]   Downloaded lexical-util v1.0.7
[INFO] [stderr]   Downloaded noodles-sam v0.77.0
[INFO] [stderr]   Downloaded pyo3-ffi v0.25.1
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.25.1
[INFO] [stderr]   Downloaded lexical-parse-float v1.0.6
[INFO] [stderr]   Downloaded lexical-write-integer v1.0.6
[INFO] [stderr]   Downloaded libdeflate-sys v1.25.0
[INFO] [stderr]   Downloaded libdeflater v1.25.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.41.0
[INFO] [stderr]   Downloaded noodles v0.99.0
[INFO] [stderr]   Downloaded pyo3-build-config v0.25.1
[INFO] [stderr]   Downloaded bstr v1.12.1
[INFO] [stderr]   Downloaded pyo3 v0.25.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7c67c786c6cf994a4326a6c44a9823ef9ad43149c355ba3ba3ba1ecb82823f8f
[INFO] running `Command { std: "docker" "start" "-a" "7c67c786c6cf994a4326a6c44a9823ef9ad43149c355ba3ba3ba1ecb82823f8f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7c67c786c6cf994a4326a6c44a9823ef9ad43149c355ba3ba3ba1ecb82823f8f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7c67c786c6cf994a4326a6c44a9823ef9ad43149c355ba3ba3ba1ecb82823f8f", kill_on_drop: false }`
[INFO] [stdout] 7c67c786c6cf994a4326a6c44a9823ef9ad43149c355ba3ba3ba1ecb82823f8f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f884ac8825e0fd6c1c7ec6f107c11052c2692aec9cbf6b5502913b95c0777ca4
[INFO] running `Command { std: "docker" "start" "-a" "f884ac8825e0fd6c1c7ec6f107c11052c2692aec9cbf6b5502913b95c0777ca4", kill_on_drop: false }`
[INFO] [stderr]    Compiling target-lexicon v0.13.3
[INFO] [stderr]    Compiling cfg-if v1.0.4
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling lexical-util v1.0.7
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
[INFO] [stderr]    Compiling zlib-rs v0.5.2
[INFO] [stderr]    Compiling quote v1.0.42
[INFO] [stderr]    Compiling regex-automata v0.4.13
[INFO] [stderr]    Compiling unicode-ident v1.0.22
[INFO] [stderr]    Compiling cc v1.2.45
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling bitflags v2.10.0
[INFO] [stderr]    Compiling indexmap v2.12.0
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling portable-atomic v1.11.1
[INFO] [stderr]    Compiling unicode-width v0.2.2
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling unit-prefix v0.5.1
[INFO] [stderr]    Compiling indoc v2.0.7
[INFO] [stderr]    Compiling unindent v0.2.4
[INFO] [stderr]    Compiling natord v1.0.9
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling lexical-write-integer v1.0.6
[INFO] [stderr]    Compiling syn v2.0.109
[INFO] [stderr]    Compiling lexical-write-float v1.0.6
[INFO] [stderr]    Compiling pyo3-build-config v0.25.1
[INFO] [stderr]    Compiling lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling libdeflate-sys v1.25.0
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling lexical-core v1.0.6
[INFO] [stderr]    Compiling noodles-core v0.17.0
[INFO] [stderr]    Compiling parking_lot_core v0.9.12
[INFO] [stderr]    Compiling pyo3-macros-backend v0.25.1
[INFO] [stderr]    Compiling pyo3-ffi v0.25.1
[INFO] [stderr]    Compiling pyo3 v0.25.1
[INFO] [stderr]    Compiling console v0.16.1
[INFO] [stderr]    Compiling ctrlc v3.5.1
[INFO] [stderr]    Compiling indicatif v0.18.2
[INFO] [stderr]    Compiling libz-rs-sys v0.5.2
[INFO] [stderr]    Compiling flate2 v1.1.5
[INFO] [stderr]    Compiling libdeflater v1.25.0
[INFO] [stderr]    Compiling noodles-bgzf v0.41.0
[INFO] [stderr]    Compiling noodles-csi v0.49.0
[INFO] [stderr]    Compiling noodles-sam v0.77.0
[INFO] [stderr]    Compiling noodles-bam v0.81.0
[INFO] [stderr]    Compiling noodles v0.99.0
[INFO] [stderr]    Compiling pyo3-macros v0.25.1
[INFO] [stderr]    Compiling cnv_from_bam v0.4.5 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `PyList`
[INFO] [stdout]   --> src/lib.rs:71:27
[INFO] [stdout]    |
[INFO] [stdout] 71 | use pyo3::types::{PyDict, PyList};
[INFO] [stdout]    |                           ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 33.72s
[INFO] running `Command { std: "docker" "inspect" "f884ac8825e0fd6c1c7ec6f107c11052c2692aec9cbf6b5502913b95c0777ca4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f884ac8825e0fd6c1c7ec6f107c11052c2692aec9cbf6b5502913b95c0777ca4", kill_on_drop: false }`
[INFO] [stdout] f884ac8825e0fd6c1c7ec6f107c11052c2692aec9cbf6b5502913b95c0777ca4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1a9bd1b772882577d0658a7d969b1d91de6f09bfe5aa2ad488969153d8c21872
[INFO] running `Command { std: "docker" "start" "-a" "1a9bd1b772882577d0658a7d969b1d91de6f09bfe5aa2ad488969153d8c21872", kill_on_drop: false }`
[INFO] [stderr]    Compiling cnv_from_bam v0.4.5 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `PyList`
[INFO] [stdout]   --> src/lib.rs:71:27
[INFO] [stdout]    |
[INFO] [stdout] 71 | use pyo3::types::{PyDict, PyList};
[INFO] [stdout]    |                           ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note:  "cc" "-m64" "/tmp/rustct5Vkey/symbols.o" "<17 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libctrlc-640b140150630de2,libnix-141b21c4a5ed106a}.rlib" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libtest-*,libgetopts-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/debug/deps/{libpyo3-d76792a8b3203ba0,libmemoffset-b97817c90c352208,libpyo3_ffi-647521a1f5c80cf5,libunindent-37c9ebf01f989e9d,libnoodles-104949b9eb7f6a84,libnoodles_bam-00f08f2366fc474e,libnoodles_sam-e6eaa83ded78e8d7,libbitflags-443c99b827427271,liblexical_core-ec304a685e5b8ed2,liblexical_write_float-249cab2e4401e90b,liblexical_write_integer-2a179ab244176dc8,liblexical_parse_float-928b2ef778e39506,liblexical_parse_integer-47426558b7b9f981,liblexical_util-9b713496bcbc54a4,libnoodles_csi-d238d3755ca3d307,libbit_vec-4078949085e9c884,libnoodles_core-99068f7bca0574da,libnoodles_bgzf-38eb04f681f80e10,libbytes-bfe11088fe358bd1,libcrossbeam_channel-a5156ef294398bef,liblibdeflater-a3a9acd5339cdaf9,liblibdeflate_sys-b9f1df0f93a379a8,libflate2-05855d9b07d86dad,liblibz_rs_sys-38079c6bb2b4a1da,libzlib_rs-bb4005d77c524b7b,libcrc32fast-dd4d00f496d54ff6,libindexmap-b8e31cf84a4d825d,libequivalent-7e0e8cbe6c474a67,libhashbrown-39a1ad584b454bfa,libbyteorder-1efcbe4f07366651,libnatord-17df5b7ba74eac9e,liblog-45f74354a8b36c20,libbstr-3263546421f719fe,libregex_automata-b62ad27c7430f0fd,libmemchr-f9c66c7ba21bf873,libindicatif-adfc1bccc5a7f975,libportable_atomic-d05f93fb4b6471e6,librayon-380c63807d2b5582,librayon_core-e3d7e751b31f5166,libcrossbeam_deque-ce08bd9aba37d973,libcrossbeam_epoch-0e344cb0f6dc787c,libcrossbeam_utils-57acb8582d3ed5fe,libeither-3b4351e3b18e236a,libunit_prefix-bb44c7495081a207,libconsole-3edac7fece743c5c,libunicode_width-11318280e9097d13,libonce_cell-0523c262e64d05cf,libparking_lot_core-b6d8e223755d592e,liblibc-5123f14f31b09f0b,libcfg_if-5af52f617df93f8f,libsmallvec-45f6e3b8047adea1,libfnv-2d77ec4f6f971b24}.rlib" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustct5Vkey/raw-dylibs" "-B<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-db7685cf376c0a78/out/lib" "-L" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/cnv_from_bam-57f27239931d866b" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: some arguments are omitted. use `--verbose` to show all linker arguments
[INFO] [stdout]   = note: rust-lld: error: undefined symbol: PyExc_SystemExit
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/pyo3-0.25.1/src/exceptions.rs:282)
[INFO] [stdout]           >>>               /opt/rustwide/target/debug/deps/cnv_from_bam-57f27239931d866b.cnv_from_bam.cc1f930f85669a3a-cgu.15.rcgu.o:(_$LT$pyo3..exceptions..PySystemExit$u20$as$u20$pyo3..type_object..PyTypeInfo$GT$::type_object_raw::_$u7b$$u7b$closure$u7d$$u7d$::hda8ce0636d8566a5)
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/pyo3-0.25.1/src/exceptions.rs:282)
[INFO] [stdout]           >>>               /opt/rustwide/target/debug/deps/cnv_from_bam-57f27239931d866b.cnv_from_bam.cc1f930f85669a3a-cgu.15.rcgu.o:(_$LT$pyo3..exceptions..PySystemExit$u20$as$u20$pyo3..type_object..PyTypeInfo$GT$::type_object_raw::_$u7b$$u7b$closure$u7d$$u7d$::hda8ce0636d8566a5)
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyEval_SaveThread
[INFO] [stdout]           >>> referenced by gil.rs:304 (src/gil.rs:304)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.03.rcgu.o:(pyo3::gil::SuspendGIL::new::hde40956a16da546a) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           >>> referenced by gil.rs:72 (src/gil.rs:72)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.03.rcgu.o:(pyo3::gil::prepare_freethreaded_python::_$u7b$$u7b$closure$u7d$$u7d$::h3bb604fe49c11b07) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: _Py_Dealloc
[INFO] [stdout]           >>> referenced by refcount.rs:305 (/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/pyo3-ffi-0.25.1/src/refcount.rs:305)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.03.rcgu.o:(pyo3::gil::ReferencePool::update_counts::h23dcb3097588d700) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           >>> referenced by refcount.rs:305 (/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/pyo3-ffi-0.25.1/src/refcount.rs:305)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.03.rcgu.o:(pyo3::gil::register_decref::h85647058ff44490f) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           >>> referenced by refcount.rs:305 (/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/pyo3-ffi-0.25.1/src/refcount.rs:305)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.00.rcgu.o:(_$LT$pyo3..instance..Bound$LT$T$GT$$u20$as$u20$core..ops..drop..Drop$GT$::drop::h1589db2ca0ab690c) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           >>> referenced 6 more times
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyObject_GetAttr
[INFO] [stdout]           >>> referenced by any.rs:984 (src/types/any.rs:984)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.05.rcgu.o:(_$LT$pyo3..instance..Bound$LT$pyo3..types..any..PyAny$GT$$u20$as$u20$pyo3..types..any..PyAnyMethods$GT$::getattr::inner::h5ee3fd9a72feebb3) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: Py_IsInitialized
[INFO] [stdout]           >>> referenced by gil.rs:68 (src/gil.rs:68)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.03.rcgu.o:(pyo3::gil::prepare_freethreaded_python::_$u7b$$u7b$closure$u7d$$u7d$::h3bb604fe49c11b07) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           >>> referenced by gil.rs:184 (src/gil.rs:184)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.03.rcgu.o:(pyo3::gil::GILGuard::acquire::_$u7b$$u7b$closure$u7d$$u7d$::h6cb4e0886c407b44) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: Py_InitializeEx
[INFO] [stdout]           >>> referenced by gil.rs:69 (src/gil.rs:69)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.03.rcgu.o:(pyo3::gil::prepare_freethreaded_python::_$u7b$$u7b$closure$u7d$$u7d$::h3bb604fe49c11b07) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyGILState_Release
[INFO] [stdout]           >>> referenced by gil.rs:243 (src/gil.rs:243)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.03.rcgu.o:(_$LT$pyo3..gil..GILGuard$u20$as$u20$core..ops..drop..Drop$GT$::drop::h2ae8c65eabd89007) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyEval_RestoreThread
[INFO] [stdout]           >>> referenced by gil.rs:314 (src/gil.rs:314)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.03.rcgu.o:(_$LT$pyo3..gil..SuspendGIL$u20$as$u20$core..ops..drop..Drop$GT$::drop::h6d298e0026ffe05d) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyErr_SetString
[INFO] [stdout]           >>> referenced by err_state.rs:357 (src/err/err_state.rs:357)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(pyo3::err::err_state::raise_lazy::hd978cfb49469b951) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyErr_SetObject
[INFO] [stdout]           >>> referenced by err_state.rs:362 (src/err/err_state.rs:362)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(pyo3::err::err_state::raise_lazy::hd978cfb49469b951) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyErr_SetRaisedException
[INFO] [stdout]           >>> referenced by err_state.rs:322 (src/err/err_state.rs:322)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(pyo3::err::err_state::PyErrStateInner::restore::he8d7e3119606ab97) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyException_GetTraceback
[INFO] [stdout]           >>> referenced by err_state.rs:179 (src/err/err_state.rs:179)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(pyo3::err::err_state::PyErrStateNormalized::ptraceback::h1689bb4ef2d3cd46) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyErr_GetRaisedException
[INFO] [stdout]           >>> referenced by err_state.rs:190 (src/err/err_state.rs:190)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(pyo3::err::err_state::PyErrStateNormalized::take::hc247b9492cf9e31d) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyUnicode_FromStringAndSize
[INFO] [stdout]           >>> referenced by string.rs:166 (src/types/string.rs:166)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(pyo3::types::string::PyString::new::h5abefe34c2df4d36) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           >>> referenced by string.rs:184 (src/types/string.rs:184)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(pyo3::types::string::PyString::intern::h2780fd41c3543bb1) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyUnicode_InternInPlace
[INFO] [stdout]           >>> referenced by string.rs:186 (src/types/string.rs:186)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(pyo3::types::string::PyString::intern::h2780fd41c3543bb1) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyExc_OSError
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(_$LT$pyo3..exceptions..PyOSError$u20$as$u20$pyo3..type_object..PyTypeInfo$GT$::type_object_raw::_$u7b$$u7b$closure$u7d$$u7d$::h63d5d216f2c8f5c7) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(_$LT$pyo3..exceptions..PyOSError$u20$as$u20$pyo3..type_object..PyTypeInfo$GT$::type_object_raw::_$u7b$$u7b$closure$u7d$$u7d$::h63d5d216f2c8f5c7) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyExc_TypeError
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(_$LT$pyo3..exceptions..PyTypeError$u20$as$u20$pyo3..type_object..PyTypeInfo$GT$::type_object_raw::_$u7b$$u7b$closure$u7d$$u7d$::h70c2f3ab1506eb5d) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(_$LT$pyo3..exceptions..PyTypeError$u20$as$u20$pyo3..type_object..PyTypeInfo$GT$::type_object_raw::_$u7b$$u7b$closure$u7d$$u7d$::h70c2f3ab1506eb5d) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyExc_RuntimeError
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(_$LT$pyo3..exceptions..PyRuntimeError$u20$as$u20$pyo3..type_object..PyTypeInfo$GT$::type_object_raw::_$u7b$$u7b$closure$u7d$$u7d$::h7f46f679ffb5475a) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(_$LT$pyo3..exceptions..PyRuntimeError$u20$as$u20$pyo3..type_object..PyTypeInfo$GT$::type_object_raw::_$u7b$$u7b$closure$u7d$$u7d$::h7f46f679ffb5475a) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyExc_TimeoutError
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(_$LT$pyo3..exceptions..PyTimeoutError$u20$as$u20$pyo3..type_object..PyTypeInfo$GT$::type_object_raw::_$u7b$$u7b$closure$u7d$$u7d$::h60060c8b5006022c) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.04.rcgu.o:(_$LT$pyo3..exceptions..PyTimeoutError$u20$as$u20$pyo3..type_object..PyTypeInfo$GT$::type_object_raw::_$u7b$$u7b$closure$u7d$$u7d$::h60060c8b5006022c) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyObject_Str
[INFO] [stdout]           >>> referenced by any.rs:1522 (src/types/any.rs:1522)
[INFO] [stdout]           >>>               pyo3-d76792a8b3203ba0.pyo3.4eef17ba669c96ff-cgu.00.rcgu.o:(_$LT$pyo3..instance..Bound$LT$pyo3..types..any..PyAny$GT$$u20$as$u20$pyo3..types..any..PyAnyMethods$GT$::str::h28e08b0f435dad82) in archive /opt/rustwide/target/debug/deps/libpyo3-d76792a8b3203ba0.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: too many errors emitted, stopping now (use --error-limit=0 to see all errors)
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `cnv_from_bam` (lib test) due to 1 previous error; 1 warning emitted
[INFO] running `Command { std: "docker" "inspect" "1a9bd1b772882577d0658a7d969b1d91de6f09bfe5aa2ad488969153d8c21872", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1a9bd1b772882577d0658a7d969b1d91de6f09bfe5aa2ad488969153d8c21872", kill_on_drop: false }`
[INFO] [stdout] 1a9bd1b772882577d0658a7d969b1d91de6f09bfe5aa2ad488969153d8c21872
