[INFO] cloning repository https://github.com/10XGenomics/rust-pseudoaligner
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/rust-pseudoaligner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9d9cab8a1475bc7cd34169822620c77bce0d5930
[INFO] testing 10XGenomics/rust-pseudoaligner against try#9f93af291970322f4f1c6315ccde4d7078201159 for pr-146098-6
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner
[INFO] finished tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner
[INFO] tweaked toml for git repo https://github.com/10XGenomics/rust-pseudoaligner written to /workspace/builds/worker-6-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/10XGenomics/rust-pseudoaligner on toolchain 9f93af291970322f4f1c6315ccde4d7078201159
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/10XGenomics/rust-pseudoaligner already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a231f4e11462aaa60be995491699a0cc137561ce6f4687a86f784bee262d9b65
[INFO] running `Command { std: "docker" "start" "-a" "a231f4e11462aaa60be995491699a0cc137561ce6f4687a86f784bee262d9b65", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a231f4e11462aaa60be995491699a0cc137561ce6f4687a86f784bee262d9b65", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a231f4e11462aaa60be995491699a0cc137561ce6f4687a86f784bee262d9b65", kill_on_drop: false }`
[INFO] [stdout] a231f4e11462aaa60be995491699a0cc137561ce6f4687a86f784bee262d9b65
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 06c2e4073830c806bb04191575b3fc8d52f02457f2902f87280556dff9e2bf1d
[INFO] running `Command { std: "docker" "start" "-a" "06c2e4073830c806bb04191575b3fc8d52f02457f2902f87280556dff9e2bf1d", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.39
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[INFO] [stderr]    Compiling libc v0.2.152
[INFO] [stderr]    Compiling serde_derive v1.0.147
[INFO] [stderr]    Compiling serde v1.0.147
[INFO] [stderr]    Compiling memchr v2.7.1
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[INFO] [stderr]    Compiling scopeguard v1.1.0
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[INFO] [stderr]    Compiling wyhash v0.5.0
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling itertools v0.11.0
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[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling petgraph v0.6.4
[INFO] [stderr]    Compiling miniz_oxide v0.7.1
[INFO] [stderr]    Compiling lock_api v0.4.11
[INFO] [stderr]    Compiling parking_lot_core v0.9.9
[INFO] [stderr]    Compiling regex v1.10.3
[INFO] [stderr]    Compiling ndarray v0.15.4
[INFO] [stderr]    Compiling env_logger v0.10.2
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.31
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling enum-map v1.1.1
[INFO] [stderr]    Compiling ordered-float v3.7.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling strum v0.23.0
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bytecount v0.6.3
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling dashmap v5.5.3
[INFO] [stderr]    Compiling pretty_env_logger v0.5.0
[INFO] [stderr]    Compiling flate2 v1.0.28
[INFO] [stderr]    Compiling thiserror v1.0.31
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling boomphf v0.6.0
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling docopt v1.1.1
[INFO] [stderr]    Compiling debruijn v0.3.4 (https://github.com/10XGenomics/rust-debruijn#8d9a5c52)
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.5.0
[INFO] [stderr]    Compiling debruijn_mapping v0.6.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 40s
[INFO] running `Command { std: "docker" "inspect" "06c2e4073830c806bb04191575b3fc8d52f02457f2902f87280556dff9e2bf1d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "06c2e4073830c806bb04191575b3fc8d52f02457f2902f87280556dff9e2bf1d", kill_on_drop: false }`
[INFO] [stdout] 06c2e4073830c806bb04191575b3fc8d52f02457f2902f87280556dff9e2bf1d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9e551346bad5873aa7ea3495af80867e5ba3409283c9488c63bfbd1d397816a7
[INFO] running `Command { std: "docker" "start" "-a" "9e551346bad5873aa7ea3495af80867e5ba3409283c9488c63bfbd1d397816a7", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustix v0.38.31
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling fastrand v2.0.1
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling rand_xorshift v0.3.0
[INFO] [stderr]    Compiling unarray v0.1.4
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling bio v1.5.0
[INFO] [stderr]    Compiling debruijn v0.3.4 (https://github.com/10XGenomics/rust-debruijn#8d9a5c52)
[INFO] [stderr]    Compiling is-terminal v0.4.10
[INFO] [stderr]    Compiling tempfile v3.10.0
[INFO] [stderr]    Compiling env_logger v0.10.2
[INFO] [stderr]    Compiling pretty_env_logger v0.5.0
[INFO] [stderr]    Compiling rusty-fork v0.3.0
[INFO] [stderr]    Compiling proptest v1.4.0
[INFO] [stderr]    Compiling debruijn_mapping v0.6.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 25.34s
[INFO] running `Command { std: "docker" "inspect" "9e551346bad5873aa7ea3495af80867e5ba3409283c9488c63bfbd1d397816a7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9e551346bad5873aa7ea3495af80867e5ba3409283c9488c63bfbd1d397816a7", kill_on_drop: false }`
[INFO] [stdout] 9e551346bad5873aa7ea3495af80867e5ba3409283c9488c63bfbd1d397816a7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+9f93af291970322f4f1c6315ccde4d7078201159" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] de5ab7cc1664640176a74a766d2e2289616a5e482bfd570054ed78ddf7bded1f
[INFO] running `Command { std: "docker" "start" "-a" "de5ab7cc1664640176a74a766d2e2289616a5e482bfd570054ed78ddf7bded1f", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.25s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/debruijn_mapping-6b057b010f1fda9d)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test pseudoaligner::test::intersect_test ... ok
[INFO] [stdout] test build_index::test::group_by_slices_test ... ok
[INFO] [stdout] test pseudoaligner::test::intersect_prop_test ... ok
[INFO] [stdout] test build_index::test::test_gencode_small_build_20 has been running for over 60 seconds
[INFO] [stdout] test build_index::test::test_gencode_small_build_64 has been running for over 60 seconds
[INFO] [stdout] test build_index::test::test_gencode_small_build_64 ... ok
[INFO] [stdout] test build_index::test::test_gencode_small_build_20 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 73.99s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/pseudoaligner.rs (/opt/rustwide/target/debug/deps/pseudoaligner-b912806d03103624)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests debruijn_mapping
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "de5ab7cc1664640176a74a766d2e2289616a5e482bfd570054ed78ddf7bded1f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "de5ab7cc1664640176a74a766d2e2289616a5e482bfd570054ed78ddf7bded1f", kill_on_drop: false }`
[INFO] [stdout] de5ab7cc1664640176a74a766d2e2289616a5e482bfd570054ed78ddf7bded1f
