[INFO] cloning repository https://github.com/10XGenomics/rust-pseudoaligner
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/rust-pseudoaligner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9d9cab8a1475bc7cd34169822620c77bce0d5930
[INFO] testing 10XGenomics/rust-pseudoaligner against master#1ef7943ee607160a564655b6596f83670ef95df5 for pr-146098-6
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner
[INFO] finished tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner
[INFO] tweaked toml for git repo https://github.com/10XGenomics/rust-pseudoaligner written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/10XGenomics/rust-pseudoaligner on toolchain 1ef7943ee607160a564655b6596f83670ef95df5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/10XGenomics/rust-pseudoaligner already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/10XGenomics/rust-debruijn`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded tempfile v3.10.0
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b2690c303333d66c25a747420082f2d17459daa713fbcf040b854e02879209a6
[INFO] running `Command { std: "docker" "start" "-a" "b2690c303333d66c25a747420082f2d17459daa713fbcf040b854e02879209a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b2690c303333d66c25a747420082f2d17459daa713fbcf040b854e02879209a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b2690c303333d66c25a747420082f2d17459daa713fbcf040b854e02879209a6", kill_on_drop: false }`
[INFO] [stdout] b2690c303333d66c25a747420082f2d17459daa713fbcf040b854e02879209a6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3828e2442fa4857f545735ed00cd59a0ec8c7ff2edd242c94dc4d636869be456
[INFO] running `Command { std: "docker" "start" "-a" "3828e2442fa4857f545735ed00cd59a0ec8c7ff2edd242c94dc4d636869be456", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.39
[INFO] [stderr]    Compiling unicode-ident v1.0.0
[INFO] [stderr]    Compiling syn v1.0.96
[INFO] [stderr]    Compiling libm v0.2.2
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling libc v0.2.152
[INFO] [stderr]    Compiling serde_derive v1.0.147
[INFO] [stderr]    Compiling serde v1.0.147
[INFO] [stderr]    Compiling memchr v2.7.1
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.8
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling regex-syntax v0.8.2
[INFO] [stderr]    Compiling quote v1.0.18
[INFO] [stderr]    Compiling bytemuck v1.14.0
[INFO] [stderr]    Compiling aho-corasick v1.1.2
[INFO] [stderr]    Compiling safe_arch v0.7.1
[INFO] [stderr]    Compiling getrandom v0.2.6
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[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rayon-core v1.12.1
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[INFO] [stderr]    Compiling approx v0.5.1
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[INFO] [stderr]    Compiling matrixmultiply v0.3.2
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
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[INFO] [stderr]    Compiling linux-raw-sys v0.4.13
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[INFO] [stderr]    Compiling csv-core v0.1.11
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[INFO] [stderr]    Compiling miniz_oxide v0.7.1
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[INFO] [stderr]    Compiling petgraph v0.6.4
[INFO] [stderr]    Compiling regex v1.10.3
[INFO] [stderr]    Compiling lock_api v0.4.11
[INFO] [stderr]    Compiling parking_lot_core v0.9.9
[INFO] [stderr]    Compiling env_logger v0.10.2
[INFO] [stderr]    Compiling ndarray v0.15.4
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v3.7.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.31
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling enum-map v1.1.1
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling strum v0.23.0
[INFO] [stderr]    Compiling bytecount v0.6.3
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling dashmap v5.5.3
[INFO] [stderr]    Compiling thiserror v1.0.31
[INFO] [stderr]    Compiling pretty_env_logger v0.5.0
[INFO] [stderr]    Compiling flate2 v1.0.28
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling boomphf v0.6.0
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling docopt v1.1.1
[INFO] [stderr]    Compiling debruijn v0.3.4 (https://github.com/10XGenomics/rust-debruijn#8d9a5c52)
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.5.0
[INFO] [stderr]    Compiling debruijn_mapping v0.6.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 42s
[INFO] running `Command { std: "docker" "inspect" "3828e2442fa4857f545735ed00cd59a0ec8c7ff2edd242c94dc4d636869be456", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3828e2442fa4857f545735ed00cd59a0ec8c7ff2edd242c94dc4d636869be456", kill_on_drop: false }`
[INFO] [stdout] 3828e2442fa4857f545735ed00cd59a0ec8c7ff2edd242c94dc4d636869be456
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 46a62eb3bb2c9dc977f76edff28f3dfc24fc5e42e373181821a5e1b266720b08
[INFO] running `Command { std: "docker" "start" "-a" "46a62eb3bb2c9dc977f76edff28f3dfc24fc5e42e373181821a5e1b266720b08", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustix v0.38.31
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling fastrand v2.0.1
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling rand_xorshift v0.3.0
[INFO] [stderr]    Compiling unarray v0.1.4
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling debruijn v0.3.4 (https://github.com/10XGenomics/rust-debruijn#8d9a5c52)
[INFO] [stderr]    Compiling bio v1.5.0
[INFO] [stderr]    Compiling is-terminal v0.4.10
[INFO] [stderr]    Compiling tempfile v3.10.0
[INFO] [stderr]    Compiling env_logger v0.10.2
[INFO] [stderr]    Compiling rusty-fork v0.3.0
[INFO] [stderr]    Compiling pretty_env_logger v0.5.0
[INFO] [stderr]    Compiling proptest v1.4.0
[INFO] [stderr]    Compiling debruijn_mapping v0.6.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 26.71s
[INFO] running `Command { std: "docker" "inspect" "46a62eb3bb2c9dc977f76edff28f3dfc24fc5e42e373181821a5e1b266720b08", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "46a62eb3bb2c9dc977f76edff28f3dfc24fc5e42e373181821a5e1b266720b08", kill_on_drop: false }`
[INFO] [stdout] 46a62eb3bb2c9dc977f76edff28f3dfc24fc5e42e373181821a5e1b266720b08
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1ef7943ee607160a564655b6596f83670ef95df5" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 477ec3adf08626d389ae4889a132f658d76a59f4341e6891db0c4fe5baf4079a
[INFO] running `Command { std: "docker" "start" "-a" "477ec3adf08626d389ae4889a132f658d76a59f4341e6891db0c4fe5baf4079a", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.23s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/debruijn_mapping-6b057b010f1fda9d)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test pseudoaligner::test::intersect_test ... ok
[INFO] [stdout] test build_index::test::group_by_slices_test ... ok
[INFO] [stdout] test pseudoaligner::test::intersect_prop_test ... ok
[INFO] [stdout] test build_index::test::test_gencode_small_build_20 has been running for over 60 seconds
[INFO] [stdout] test build_index::test::test_gencode_small_build_64 has been running for over 60 seconds
[INFO] [stdout] test build_index::test::test_gencode_small_build_64 ... ok
[INFO] [stdout] test build_index::test::test_gencode_small_build_20 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 71.06s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/pseudoaligner.rs (/opt/rustwide/target/debug/deps/pseudoaligner-b912806d03103624)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests debruijn_mapping
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "477ec3adf08626d389ae4889a132f658d76a59f4341e6891db0c4fe5baf4079a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "477ec3adf08626d389ae4889a132f658d76a59f4341e6891db0c4fe5baf4079a", kill_on_drop: false }`
[INFO] [stdout] 477ec3adf08626d389ae4889a132f658d76a59f4341e6891db0c4fe5baf4079a
