[INFO] fetching crate sfs-cli 0.1.0...
[INFO] testing sfs-cli-0.1.0 against try#2440211fe03bc45c89b6dc1a3df18382ce91e32b for pr-146098-1
[INFO] extracting crate sfs-cli 0.1.0 into /workspace/builds/worker-1-tc2/source
[INFO] started tweaking crates.io crate sfs-cli 0.1.0
[INFO] finished tweaking crates.io crate sfs-cli 0.1.0
[INFO] tweaked toml for crates.io crate sfs-cli 0.1.0 written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate sfs-cli 0.1.0 on toolchain 2440211fe03bc45c89b6dc1a3df18382ce91e32b
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate sfs-cli 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] d2b6b5a935cdbe92bac634433c298d1b616831f5b9d182e11e6057103f502bf2
[INFO] running `Command { std: "docker" "start" "-a" "d2b6b5a935cdbe92bac634433c298d1b616831f5b9d182e11e6057103f502bf2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d2b6b5a935cdbe92bac634433c298d1b616831f5b9d182e11e6057103f502bf2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d2b6b5a935cdbe92bac634433c298d1b616831f5b9d182e11e6057103f502bf2", kill_on_drop: false }`
[INFO] [stdout] d2b6b5a935cdbe92bac634433c298d1b616831f5b9d182e11e6057103f502bf2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] af37480642634c21d640b4ffa12742da76569617e5ea426544f4e666c850fffa
[INFO] running `Command { std: "docker" "start" "-a" "af37480642634c21d640b4ffa12742da76569617e5ea426544f4e666c850fffa", kill_on_drop: false }`
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.16
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling proc-macro2 v1.0.66
[INFO] [stderr]    Compiling hashbrown v0.14.0
[INFO] [stderr]    Compiling bytes v1.4.0
[INFO] [stderr]    Compiling equivalent v1.0.1
[INFO] [stderr]    Compiling miniz_oxide v0.7.1
[INFO] [stderr]    Compiling unicode-ident v1.0.11
[INFO] [stderr]    Compiling noodles-core v0.12.0
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling utf8parse v0.2.1
[INFO] [stderr]    Compiling memchr v2.6.0
[INFO] [stderr]    Compiling anstyle-parse v0.2.1
[INFO] [stderr]    Compiling anstyle-query v1.0.0
[INFO] [stderr]    Compiling colorchoice v1.0.0
[INFO] [stderr]    Compiling anstyle v1.0.2
[INFO] [stderr]    Compiling flate2 v1.0.27
[INFO] [stderr]    Compiling crossbeam-channel v0.5.8
[INFO] [stderr]    Compiling indexmap v2.0.0
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling percent-encoding v2.3.0
[INFO] [stderr]    Compiling quote v1.0.33
[INFO] [stderr]    Compiling syn v2.0.29
[INFO] [stderr]    Compiling anstream v0.5.0
[INFO] [stderr]    Compiling anyhow v1.0.75
[INFO] [stderr]    Compiling clap_lex v0.5.1
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling noodles-bgzf v0.22.0
[INFO] [stderr]    Compiling clap_builder v4.4.0
[INFO] [stderr]    Compiling log v0.4.20
[INFO] [stderr]    Compiling once_cell v1.18.0
[INFO] [stderr]    Compiling env_logger v0.10.0
[INFO] [stderr]    Compiling noodles-csi v0.22.0
[INFO] [stderr]    Compiling noodles-tabix v0.26.0
[INFO] [stderr]    Compiling noodles-vcf v0.35.0
[INFO] [stderr]    Compiling clap_derive v4.4.0
[INFO] [stderr]    Compiling noodles-bcf v0.32.0
[INFO] [stderr]    Compiling clap v4.4.0
[INFO] [stderr]    Compiling sfs-core v0.1.0
[INFO] [stderr]    Compiling sfs-cli v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 28.55s
[INFO] running `Command { std: "docker" "inspect" "af37480642634c21d640b4ffa12742da76569617e5ea426544f4e666c850fffa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "af37480642634c21d640b4ffa12742da76569617e5ea426544f4e666c850fffa", kill_on_drop: false }`
[INFO] [stdout] af37480642634c21d640b4ffa12742da76569617e5ea426544f4e666c850fffa
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6cd611d23f8f4ee074ff4c912f3907d2efe988ec68696a9963f880a6c00ee73d
[INFO] running `Command { std: "docker" "start" "-a" "6cd611d23f8f4ee074ff4c912f3907d2efe988ec68696a9963f880a6c00ee73d", kill_on_drop: false }`
[INFO] [stderr]    Compiling crossbeam-utils v0.8.16
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling libc v0.2.147
[INFO] [stderr]    Compiling serde v1.0.188
[INFO] [stderr]    Compiling serde_derive v1.0.188
[INFO] [stderr]    Compiling rustix v0.38.9
[INFO] [stderr]    Compiling scopeguard v1.2.0
[INFO] [stderr]    Compiling rayon-core v1.11.0
[INFO] [stderr]    Compiling bitflags v2.4.0
[INFO] [stderr]    Compiling linux-raw-sys v0.4.5
[INFO] [stderr]    Compiling fastrand v2.0.0
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling walkdir v2.3.3
[INFO] [stderr]    Compiling snapbox-macros v0.3.5
[INFO] [stderr]    Compiling content_inspector v0.2.4
[INFO] [stderr]    Compiling memoffset v0.9.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.15
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.8
[INFO] [stderr]    Compiling similar v2.2.1
[INFO] [stderr]    Compiling winnow v0.5.15
[INFO] [stderr]    Compiling either v1.9.0
[INFO] [stderr]    Compiling noodles-bgzf v0.22.0
[INFO] [stderr]    Compiling crossbeam-deque v0.8.3
[INFO] [stderr]    Compiling dunce v1.0.4
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling os_pipe v1.1.4
[INFO] [stderr]    Compiling noodles-csi v0.22.0
[INFO] [stderr]    Compiling noodles-tabix v0.26.0
[INFO] [stderr]    Compiling noodles-vcf v0.35.0
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling filetime v0.2.22
[INFO] [stderr]    Compiling shlex v1.1.0
[INFO] [stderr]    Compiling tempfile v3.8.0
[INFO] [stderr]    Compiling snapbox v0.4.12
[INFO] [stderr]    Compiling rayon v1.7.0
[INFO] [stderr]    Compiling noodles-bcf v0.32.0
[INFO] [stderr]    Compiling sfs-core v0.1.0
[INFO] [stderr]    Compiling serde_spanned v0.6.3
[INFO] [stderr]    Compiling toml_datetime v0.6.3
[INFO] [stderr]    Compiling humantime-serde v1.1.1
[INFO] [stderr]    Compiling toml_edit v0.19.14
[INFO] [stderr]    Compiling sfs-cli v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling trycmd v0.14.17
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 43.98s
[INFO] running `Command { std: "docker" "inspect" "6cd611d23f8f4ee074ff4c912f3907d2efe988ec68696a9963f880a6c00ee73d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6cd611d23f8f4ee074ff4c912f3907d2efe988ec68696a9963f880a6c00ee73d", kill_on_drop: false }`
[INFO] [stdout] 6cd611d23f8f4ee074ff4c912f3907d2efe988ec68696a9963f880a6c00ee73d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 57b49ecea21be64c2a72e3523eaa225c96b6ad591b1eacae9d208e48669fb8de
[INFO] running `Command { std: "docker" "start" "-a" "57b49ecea21be64c2a72e3523eaa225c96b6ad591b1eacae9d208e48669fb8de", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/sfs-582bfa32341546cf)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test create::tests::test_parse_samples ... ok
[INFO] [stdout] test create::tests::test_project_args_conflict ... ok
[INFO] [stdout] test create::tests::test_project_strict_conflict ... ok
[INFO] [stdout] test create::tests::test_project ... ok
[INFO] [stdout] test create::tests::test_samples_and_samples_file_conflict ... ok
[INFO] [stdout] test tests::test_no_subcommand ... ok
[INFO] [stdout] test view::tests::test_marginalize_keep_and_remove_conflict ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/cli_tests.rs (/opt/rustwide/target/debug/deps/cli_tests-bf3251df1f58cc77)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stderr] Testing tests/view/marginalize_keep_unordered.toml ... ok
[INFO] [stderr] Testing tests/stat/f2_and_fst.toml ... ok
[INFO] [stderr] Testing tests/stat/heterozygosity.toml ... ok
[INFO] [stderr] Testing tests/stat/precision.toml ... ok
[INFO] [stderr] Testing tests/stat/relatedness.toml ... ok
[INFO] [stderr] Testing tests/view/marginalize_project.toml ... ok
[INFO] [stderr] Testing tests/view/convert_to_npy.toml ... ok
[INFO] [stderr] Testing tests/create/empty.toml ... ok
[INFO] [stderr] Testing tests/create/missing_2d_project_subset.toml ... ok
[INFO] [stderr] Testing tests/view/marginalize_from_npy.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_invalid_project.toml ... ok
[INFO] [stderr] Testing tests/stat/invalid_precision.toml ... ok
[INFO] [stderr] Testing tests/view/marginalize_remove.toml ... ok
[INFO] [stderr] Testing tests/create/simple_2d_subset.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_project.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_all.toml ... ok
[INFO] [stderr] Testing tests/create/simple_vcf_1d_subset.toml ... ok
[INFO] [stderr] Testing tests/create/simple_vcf_gz_2d_subset.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_dimension_error_project.toml ... ok
[INFO] [stderr] Testing tests/create/simple_1d_all.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_single.toml ... ok
[INFO] [stderr] Testing tests/fold/fold.toml ... ok
[INFO] [stderr] Testing tests/create/unknown.toml ... ok
[INFO] [stderr] Testing tests/fold/fold_from_npy_inf.toml ... ok
[INFO] [stdout] test fold ... ok
[INFO] [stderr] Testing tests/create/missing_3d_subset.toml ... ok
[INFO] [stderr] Testing tests/create/missing_1d_project_individuals.toml ... ok
[INFO] [stderr] Testing tests/create/simple_2d_all.toml ... ok
[INFO] [stdout] test stat ... ok
[INFO] [stdout] test view ... ok
[INFO] [stderr] Testing tests/create/large_4d_project_subset.toml ... ok
[INFO] [stdout] test create ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.30s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "57b49ecea21be64c2a72e3523eaa225c96b6ad591b1eacae9d208e48669fb8de", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "57b49ecea21be64c2a72e3523eaa225c96b6ad591b1eacae9d208e48669fb8de", kill_on_drop: false }`
[INFO] [stdout] 57b49ecea21be64c2a72e3523eaa225c96b6ad591b1eacae9d208e48669fb8de