[INFO] fetching crate rdkit-rs 0.1.0... [INFO] testing rdkit-rs-0.1.0 against try#2440211fe03bc45c89b6dc1a3df18382ce91e32b for pr-146098-1 [INFO] extracting crate rdkit-rs 0.1.0 into /workspace/builds/worker-0-tc2/source [INFO] started tweaking crates.io crate rdkit-rs 0.1.0 [INFO] finished tweaking crates.io crate rdkit-rs 0.1.0 [INFO] tweaked toml for crates.io crate rdkit-rs 0.1.0 written to /workspace/builds/worker-0-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate rdkit-rs 0.1.0 on toolchain 2440211fe03bc45c89b6dc1a3df18382ce91e32b [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 34 packages to latest compatible versions [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ffb49119290f67c133a33ed663fdf349e05b759ded724cf22e058de17fd4be41 [INFO] running `Command { std: "docker" "start" "-a" "ffb49119290f67c133a33ed663fdf349e05b759ded724cf22e058de17fd4be41", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ffb49119290f67c133a33ed663fdf349e05b759ded724cf22e058de17fd4be41", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ffb49119290f67c133a33ed663fdf349e05b759ded724cf22e058de17fd4be41", kill_on_drop: false }` [INFO] [stdout] ffb49119290f67c133a33ed663fdf349e05b759ded724cf22e058de17fd4be41 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ebb040c12279ef3dc8d1898be780ad53e4b282bf27357871b756856ca9864789 [INFO] running `Command { std: "docker" "start" "-a" "ebb040c12279ef3dc8d1898be780ad53e4b282bf27357871b756856ca9864789", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.101 [INFO] [stderr] Compiling rustversion v1.0.22 [INFO] [stderr] Compiling hashbrown v0.16.0 [INFO] [stderr] Compiling cxxbridge-flags v1.0.186 [INFO] [stderr] Compiling foldhash v0.2.0 [INFO] [stderr] Compiling link-cplusplus v1.0.12 [INFO] [stderr] Compiling cxx v1.0.186 [INFO] [stderr] Compiling indexmap v2.11.4 [INFO] [stderr] Compiling quote v1.0.41 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling cxxbridge-macro v1.0.186 [INFO] [stderr] Compiling rdkit-ffi v0.1.0+rdkit-2022-09-1-pre [INFO] [stderr] Compiling rdkit-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 16.16s [INFO] running `Command { std: "docker" "inspect" "ebb040c12279ef3dc8d1898be780ad53e4b282bf27357871b756856ca9864789", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ebb040c12279ef3dc8d1898be780ad53e4b282bf27357871b756856ca9864789", kill_on_drop: false }` [INFO] [stdout] ebb040c12279ef3dc8d1898be780ad53e4b282bf27357871b756856ca9864789 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ed26954622141913a9927e29d8b835df1887633a89d9f9b617ef01f977abed36 [INFO] running `Command { std: "docker" "start" "-a" "ed26954622141913a9927e29d8b835df1887633a89d9f9b617ef01f977abed36", kill_on_drop: false }` [INFO] [stderr] Compiling rdkit-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcxjGOJe/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libtest-*,libgetopts-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/debug/deps/{librdkit_ffi-100ea6f9c49f0fd5,libcxx-49eb38b83cb60c83,libfoldhash-40583849f0199317,liblink_cplusplus-5fe6bd1a9669a4a1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lstdc++" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcxjGOJe/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/cxx-dc43b5681b587684/out" "-L" "/opt/rustwide/target/debug/build/link-cplusplus-538204cd872abe33/out" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/rdkit_rs-f16debc66a8616bb" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: rust-lld: error: undefined symbol: cxxbridge1$shared_ptr$RDKit$RWMol$drop [INFO] [stdout] >>> referenced by lib.rs:7 (src/lib.rs:7) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..RWMol$u20$as$u20$cxx..shared_ptr..SharedPtrTarget$GT$::__drop::h7ce50bd8c5ae8e15) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MCSResult$raw [INFO] [stdout] >>> referenced by lib.rs:27 (src/lib.rs:27) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MCSResult$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__raw::h8a7e74d470af1044) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MCSResult$drop [INFO] [stdout] >>> referenced by lib.rs:27 (src/lib.rs:27) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MCSResult$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__drop::h780d64539837aaa9) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$ROMolPtrVec$raw [INFO] [stdout] >>> referenced by lib.rs:15 (src/lib.rs:15) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..ROMolPtrVec$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__raw::h6074bb435a2e1d82) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$ROMolPtrVec$drop [INFO] [stdout] >>> referenced by lib.rs:15 (src/lib.rs:15) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..ROMolPtrVec$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__drop::hd8e9e24dd7e23860) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MorganFingerprint$raw [INFO] [stdout] >>> referenced by lib.rs:22 (src/lib.rs:22) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MorganFingerprint$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__raw::h34a06e33525305b8) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MorganFingerprint$drop [INFO] [stdout] >>> referenced by lib.rs:22 (src/lib.rs:22) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MorganFingerprint$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__drop::hc1833cbdaa044711) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$FMCS_find_mcs [INFO] [stdout] >>> referenced by lib.rs:27 (src/lib.rs:27) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(rdkit_ffi::rd::FMCS_find_mcs::h195f75c0eb2617f1) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$ROMolPtrVec_new [INFO] [stdout] >>> referenced by lib.rs:15 (src/lib.rs:15) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(rdkit_ffi::rd::ROMolPtrVec_new::he336ebf12263d893) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MCSResult_num_atoms [INFO] [stdout] >>> referenced by lib.rs:28 (src/lib.rs:28) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_num_atoms::h0f37b9a94ad44785) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MCSResult_num_bonds [INFO] [stdout] >>> referenced by lib.rs:29 (src/lib.rs:29) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_num_bonds::h6e39c5e766c36e98) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$RWMol_get_num_atoms [INFO] [stdout] >>> referenced by lib.rs:11 (src/lib.rs:11) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_atoms::hb6472cfd1343074d) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$RWMol_get_num_bonds [INFO] [stdout] >>> referenced by lib.rs:13 (src/lib.rs:13) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_bonds::hd540f00fec6c5c2c) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$SmilesParse_smi_to_mol [INFO] [stdout] >>> referenced by lib.rs:7 (src/lib.rs:7) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(rdkit_ffi::rd::SmilesParse_smi_to_mol::h4b6562dd462cf525) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MCSResult_smarts_string [INFO] [stdout] >>> referenced by lib.rs:30 (src/lib.rs:30) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_smarts_string::h6dd16e909334685e) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MorganFP_get_fingerprint [INFO] [stdout] >>> referenced by lib.rs:22 (src/lib.rs:22) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(rdkit_ffi::rd::MorganFP_get_fingerprint::hbd972773c6a0b7f9) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$ROMolPtrVec_emplace_back [INFO] [stdout] >>> referenced by lib.rs:16 (src/lib.rs:16) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(rdkit_ffi::rd::ROMolPtrVec_emplace_back::hf38c3cbe8f17722b) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$RWMol_get_num_heavy_atoms [INFO] [stdout] >>> referenced by lib.rs:12 (src/lib.rs:12) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_heavy_atoms::h87c1b6984202ee8b) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MorganFP_get_nonzero_elements_size [INFO] [stdout] >>> referenced by lib.rs:23 (src/lib.rs:23) [INFO] [stdout] >>> rdkit_ffi-100ea6f9c49f0fd5.rdkit_ffi.378c7c837fd41ecf-cgu.0.rcgu.o:(rdkit_ffi::rd::MorganFP_get_nonzero_elements_size::h8d571fc0c380bbb7) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-100ea6f9c49f0fd5.rlib [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `rdkit-rs` (lib test) due to 1 previous error [INFO] running `Command { std: "docker" "inspect" "ed26954622141913a9927e29d8b835df1887633a89d9f9b617ef01f977abed36", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ed26954622141913a9927e29d8b835df1887633a89d9f9b617ef01f977abed36", kill_on_drop: false }` [INFO] [stdout] ed26954622141913a9927e29d8b835df1887633a89d9f9b617ef01f977abed36