[INFO] fetching crate phcue-ck 0.2.0... [INFO] testing phcue-ck-0.2.0 against try#2440211fe03bc45c89b6dc1a3df18382ce91e32b for pr-146098-1 [INFO] extracting crate phcue-ck 0.2.0 into /workspace/builds/worker-7-tc2/source [INFO] started tweaking crates.io crate phcue-ck 0.2.0 [INFO] finished tweaking crates.io crate phcue-ck 0.2.0 [INFO] tweaked toml for crates.io crate phcue-ck 0.2.0 written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate phcue-ck 0.2.0 on toolchain 2440211fe03bc45c89b6dc1a3df18382ce91e32b [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate phcue-ck 0.2.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 85af7f1a388ce419f9dff6695f0ecf24239a5fd79ff81aa61beec0c7d987e8f3 [INFO] running `Command { std: "docker" "start" "-a" "85af7f1a388ce419f9dff6695f0ecf24239a5fd79ff81aa61beec0c7d987e8f3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "85af7f1a388ce419f9dff6695f0ecf24239a5fd79ff81aa61beec0c7d987e8f3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "85af7f1a388ce419f9dff6695f0ecf24239a5fd79ff81aa61beec0c7d987e8f3", kill_on_drop: false }` [INFO] [stdout] 85af7f1a388ce419f9dff6695f0ecf24239a5fd79ff81aa61beec0c7d987e8f3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d2c31fc8c6be67d3b38f0928d8220f21551cb641236d0d45febdbac9074bf6c7 [INFO] running `Command { std: "docker" "start" "-a" "d2c31fc8c6be67d3b38f0928d8220f21551cb641236d0d45febdbac9074bf6c7", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.99 [INFO] [stderr] Compiling libc v0.2.127 [INFO] [stderr] Compiling futures-core v0.3.21 [INFO] [stderr] Compiling lock_api v0.4.7 [INFO] [stderr] Compiling futures-sink v0.3.21 [INFO] [stderr] Compiling futures-task v0.3.21 [INFO] [stderr] Compiling openssl-src v111.22.0+1.1.1q [INFO] [stderr] Compiling futures-channel v0.3.21 [INFO] [stderr] Compiling tokio v1.20.1 [INFO] [stderr] Compiling futures-util v0.3.21 [INFO] [stderr] Compiling serde_derive v1.0.142 [INFO] [stderr] Compiling serde v1.0.142 [INFO] [stderr] Compiling futures-io v0.3.21 [INFO] [stderr] Compiling openssl v0.10.41 [INFO] [stderr] Compiling tracing v0.1.36 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling serde_json v1.0.83 [INFO] [stderr] Compiling url v2.2.2 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling openssl-sys v0.9.75 [INFO] [stderr] Compiling parking_lot_core v0.9.3 [INFO] [stderr] Compiling num_cpus v1.13.1 [INFO] [stderr] Compiling socket2 v0.4.4 [INFO] [stderr] Compiling mio v0.8.4 [INFO] [stderr] Compiling signal-hook-registry v1.4.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling parking_lot v0.12.1 [INFO] [stderr] Compiling regex v1.6.0 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling tokio-macros v1.8.0 [INFO] [stderr] Compiling futures-macro v0.3.21 [INFO] [stderr] Compiling openssl-macros v0.1.0 [INFO] [stderr] Compiling clap_derive v3.2.15 [INFO] [stderr] Compiling clap v3.2.16 [INFO] [stderr] Compiling futures-executor v0.3.21 [INFO] [stderr] Compiling futures v0.3.21 [INFO] [stderr] Compiling tokio-util v0.7.3 [INFO] [stderr] Compiling h2 v0.3.13 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling serde_urlencoded v0.7.1 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling hyper v0.14.20 [INFO] [stderr] Compiling native-tls v0.2.10 [INFO] [stderr] Compiling tokio-native-tls v0.3.0 [INFO] [stderr] Compiling hyper-tls v0.5.0 [INFO] [stderr] Compiling reqwest v0.11.11 [INFO] [stderr] Compiling phcue-ck v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 06s [INFO] running `Command { std: "docker" "inspect" "d2c31fc8c6be67d3b38f0928d8220f21551cb641236d0d45febdbac9074bf6c7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d2c31fc8c6be67d3b38f0928d8220f21551cb641236d0d45febdbac9074bf6c7", kill_on_drop: false }` [INFO] [stdout] d2c31fc8c6be67d3b38f0928d8220f21551cb641236d0d45febdbac9074bf6c7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6cdf46594e12aa13507a8429cf39d1317496abbcfd99c6fb3fcc2566bc25ff30 [INFO] running `Command { std: "docker" "start" "-a" "6cdf46594e12aa13507a8429cf39d1317496abbcfd99c6fb3fcc2566bc25ff30", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.11 [INFO] [stderr] Compiling crossbeam-epoch v0.9.10 [INFO] [stderr] Compiling rayon-core v1.9.3 [INFO] [stderr] Compiling either v1.7.0 [INFO] [stderr] Compiling rayon v1.5.3 [INFO] [stderr] Compiling concolor-query v0.0.5 [INFO] [stderr] Compiling remove_dir_all v0.5.3 [INFO] [stderr] Compiling os_pipe v1.0.1 [INFO] [stderr] Compiling filetime v0.2.17 [INFO] [stderr] Compiling walkdir v2.3.2 [INFO] [stderr] Compiling wait-timeout v0.2.0 [INFO] [stderr] Compiling similar v2.2.0 [INFO] [stderr] Compiling snapbox-macros v0.3.0 [INFO] [stderr] Compiling dunce v1.0.2 [INFO] [stderr] Compiling yansi v0.5.1 [INFO] [stderr] Compiling tempfile v3.3.0 [INFO] [stderr] Compiling itertools v0.10.3 [INFO] [stderr] Compiling humantime-serde v1.1.1 [INFO] [stderr] Compiling concolor v0.0.8 [INFO] [stderr] Compiling shlex v1.1.0 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.6 [INFO] [stderr] Compiling futures-util v0.3.21 [INFO] [stderr] Compiling tokio v1.20.1 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling combine v4.6.4 [INFO] [stderr] Compiling content_inspector v0.2.4 [INFO] [stderr] Compiling crossbeam-deque v0.8.2 [INFO] [stderr] Compiling snapbox v0.3.1 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling regex v1.6.0 [INFO] [stderr] Compiling futures-executor v0.3.21 [INFO] [stderr] Compiling futures v0.3.21 [INFO] [stderr] Compiling tokio-util v0.7.3 [INFO] [stderr] Compiling tokio-native-tls v0.3.0 [INFO] [stderr] Compiling h2 v0.3.13 [INFO] [stderr] Compiling toml_edit v0.14.4 [INFO] [stderr] Compiling hyper v0.14.20 [INFO] [stderr] Compiling hyper-tls v0.5.0 [INFO] [stderr] Compiling reqwest v0.11.11 [INFO] [stderr] Compiling phcue-ck v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling trycmd v0.13.5 [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 29.39s [INFO] running `Command { std: "docker" "inspect" "6cdf46594e12aa13507a8429cf39d1317496abbcfd99c6fb3fcc2566bc25ff30", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6cdf46594e12aa13507a8429cf39d1317496abbcfd99c6fb3fcc2566bc25ff30", kill_on_drop: false }` [INFO] [stdout] 6cdf46594e12aa13507a8429cf39d1317496abbcfd99c6fb3fcc2566bc25ff30 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 02212e3ba387edf9f185984749ec53efc0a87cc984d983b8bf47a98d2982fed0 [INFO] running `Command { std: "docker" "start" "-a" "02212e3ba387edf9f185984749ec53efc0a87cc984d983b8bf47a98d2982fed0", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/phcue_ck-b0368896236dc06b) [INFO] [stdout] [INFO] [stdout] running 11 tests [INFO] [stdout] test tests::test_check_num_requests_invalid_less_than_1 ... ok [INFO] [stdout] test tests::test_check_num_requests_invalid_greater_than_10 ... ok [INFO] [stdout] test tests::test_check_num_requests_valid ... ok [INFO] [stdout] test tests::test_print_csv ... ok [INFO] [stdout] test tests::test_print_csv_long ... ok [INFO] [stdout] test tests::test_print_csv_wide ... ok [INFO] [stdout] test tests::test_removal_single_reads ... ok [INFO] [stdout] test tests::test_validate_drr_accession ... ok [INFO] [stdout] test tests::test_validate_invalid_accession ... ok [INFO] [stdout] test tests::test_validate_srr_accession ... ok [INFO] [stdout] test tests::test_validate_err_accession ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/phcue_ck-045b28dd70cca400) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/cli_tests.rs (/opt/rustwide/target/debug/deps/cli_tests-688c08870efc7193) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stderr] Testing tests/cmd/one_accession.trycmd:2 ... failed [INFO] [stderr] Exit: success [INFO] [stderr] [INFO] [stderr] ---- expected: stdout [INFO] [stderr] ++++ actual: stdout [INFO] [stderr] 1 1 | Querying ENA for accession: SRR16298173 [INFO] [stderr] 2 - [ [INFO] [stderr] 3 - { [INFO] [stderr] 4 - "accession": "SRR16298173", [INFO] [stderr] 5 - "reads": [ [INFO] [stderr] 6 - { [INFO] [stderr] 7 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR162/073/SRR16298173/SRR16298173_1.fastq.gz", [INFO] [stderr] 8 - "md5": "76c841d58a4949736555f6fe2adcc86a", [INFO] [stderr] 9 - "bytes": 7332259 [INFO] [stderr] 10 - }, [INFO] [stderr] 11 - { [INFO] [stderr] 12 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR162/073/SRR16298173/SRR16298173_2.fastq.gz", [INFO] [stderr] 13 - "md5": "861e40962c89d62bf298fde8ca1b7415", [INFO] [stderr] 14 - "bytes": 7765784 [INFO] [stderr] 15 - } [INFO] [stderr] 16 - ] [INFO] [stderr] 17 - } [INFO] [stderr] 18 - ] [INFO] [stderr] 2 + Error querying ENA for accession: SRR16298173 [INFO] [stderr] 3 + Error: error sending request for url (https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR16298173&result=read_run&format=json): error trying to connect: dns error: failed to lookup address information: Temporary failure in name resolution [INFO] [stderr] stderr: [INFO] [stderr] [INFO] [stderr] Testing tests/cmd/keep_single_end_accession.trycmd:2 ... failed [INFO] [stderr] Exit: success [INFO] [stderr] [INFO] [stderr] ---- expected: stdout [INFO] [stderr] ++++ actual: stdout [INFO] [stderr] 1 1 | Querying ENA for accession: ERR5556343 [INFO] [stderr] 2 - [ [INFO] [stderr] 3 - { [INFO] [stderr] 4 - "accession": "ERR5556343", [INFO] [stderr] 5 - "reads": [ [INFO] [stderr] 6 - { [INFO] [stderr] 7 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR555/003/ERR5556343/ERR5556343.fastq.gz", [INFO] [stderr] 8 - "md5": "2b1b1d16d7b5a3d9c27f057c5064dd04", [INFO] [stderr] 9 - "bytes": 41148 [INFO] [stderr] 10 - }, [INFO] [stderr] 11 - { [INFO] [stderr] 12 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR555/003/ERR5556343/ERR5556343_1.fastq.gz", [INFO] [stderr] 13 - "md5": "2dd162ca91d340667b611d7f014eaaa5", [INFO] [stderr] 14 - "bytes": 7479353 [INFO] [stderr] 15 - }, [INFO] [stderr] 16 - { [INFO] [stderr] 17 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR555/003/ERR5556343/ERR5556343_2.fastq.gz", [INFO] [stderr] 18 - "md5": "8041deb0614dc669a3f28c20b330a599", [INFO] [stderr] 19 - "bytes": 8349710 [INFO] [stderr] 20 - } [INFO] [stderr] 21 - ] [INFO] [stderr] 22 - } [INFO] [stderr] 23 - ] [INFO] [stderr] 2 + Error querying ENA for accession: ERR5556343 [INFO] [stderr] 3 + Error: error sending request for url (https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERR5556343&result=read_run&format=json): error trying to connect: dns error: failed to lookup address information: Temporary failure in name resolution [INFO] [stderr] stderr: [INFO] [stderr] [INFO] [stderr] Testing tests/cmd/multiple_accessions.trycmd:2 ... failed [INFO] [stderr] Exit: success [INFO] [stderr] [INFO] [stderr] ---- expected: stdout [INFO] [stderr] ++++ actual: stdout [INFO] [stderr] 1 1 | Querying ENA for accession: SRR16298173 [INFO] [stderr] 2 + Error querying ENA for accession: SRR16298173 [INFO] [stderr] 3 + Error: error sending request for url (https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR16298173&result=read_run&format=json): error trying to connect: dns error: failed to lookup address information: Temporary failure in name resolution [INFO] [stderr] 2 4 | Querying ENA for accession: SRR16298174 [INFO] [stderr] 3 - [ [INFO] [stderr] 4 - { [INFO] [stderr] 5 - "accession": "SRR16298173", [INFO] [stderr] 6 - "reads": [ [INFO] [stderr] 7 - { [INFO] [stderr] 8 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR162/073/SRR16298173/SRR16298173_1.fastq.gz", [INFO] [stderr] 9 - "md5": "76c841d58a4949736555f6fe2adcc86a", [INFO] [stderr] 10 - "bytes": 7332259 [INFO] [stderr] 11 - }, [INFO] [stderr] 12 - { [INFO] [stderr] 13 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR162/073/SRR16298173/SRR16298173_2.fastq.gz", [INFO] [stderr] 14 - "md5": "861e40962c89d62bf298fde8ca1b7415", [INFO] [stderr] 15 - "bytes": 7765784 [INFO] [stderr] 16 - } [INFO] [stderr] 17 - ] [INFO] [stderr] 18 - }, [INFO] [stderr] 19 - { [INFO] [stderr] 20 - "accession": "SRR16298174", [INFO] [stderr] 21 - "reads": [ [INFO] [stderr] 22 - { [INFO] [stderr] 23 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR162/074/SRR16298174/SRR16298174_1.fastq.gz", [INFO] [stderr] 24 - "md5": "ca4365343d144947b5acf6e8ee124e49", [INFO] [stderr] 25 - "bytes": 7444532 [INFO] [stderr] 26 - }, [INFO] [stderr] 27 - { [INFO] [stderr] 28 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR162/074/SRR16298174/SRR16298174_2.fastq.gz", [INFO] [stderr] 29 - "md5": "39523f0e9757e953cb0a5d707b9e2b58", [INFO] [stderr] 30 - "bytes": 10960575 [INFO] [stderr] 31 - } [INFO] [stderr] 32 - ] [INFO] [stderr] 33 - } [INFO] [stderr] 34 - ] [INFO] [stderr] 5 + Error querying ENA for accession: SRR16298174 [INFO] [stderr] 6 + Error: error sending request for url (https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR16298174&result=read_run&format=json): error trying to connect: dns error: failed to lookup address information: Temporary failure in name resolution [INFO] [stderr] stderr: [INFO] [stderr] [INFO] [stderr] Testing tests/cmd/remove_single_end_accession.trycmd:2 ... failed [INFO] [stderr] Exit: success [INFO] [stderr] [INFO] [stderr] ---- expected: stdout [INFO] [stderr] ++++ actual: stdout [INFO] [stderr] 1 1 | Querying ENA for accession: ERR5556343 [INFO] [stderr] 2 - [ [INFO] [stderr] 3 - { [INFO] [stderr] 4 - "accession": "ERR5556343", [INFO] [stderr] 5 - "reads": [ [INFO] [stderr] 6 - { [INFO] [stderr] 7 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR555/003/ERR5556343/ERR5556343_1.fastq.gz", [INFO] [stderr] 8 - "md5": "2dd162ca91d340667b611d7f014eaaa5", [INFO] [stderr] 9 - "bytes": 7479353 [INFO] [stderr] 10 - }, [INFO] [stderr] 11 - { [INFO] [stderr] 12 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR555/003/ERR5556343/ERR5556343_2.fastq.gz", [INFO] [stderr] 13 - "md5": "8041deb0614dc669a3f28c20b330a599", [INFO] [stderr] 14 - "bytes": 8349710 [INFO] [stderr] 15 - } [INFO] [stderr] 16 - ] [INFO] [stderr] 17 - } [INFO] [stderr] 18 - ] [INFO] [stderr] 2 + Error querying ENA for accession: ERR5556343 [INFO] [stderr] 3 + Error: error sending request for url (https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERR5556343&result=read_run&format=json): error trying to connect: dns error: failed to lookup address information: Temporary failure in name resolution [INFO] [stderr] stderr: [INFO] [stderr] [INFO] [stderr] Testing tests/cmd/file_accessions.trycmd:2 ... failed [INFO] [stderr] Exit: success [INFO] [stderr] [INFO] [stderr] ---- expected: stdout [INFO] [stderr] ++++ actual: stdout [INFO] [stderr] 1 1 | Querying ENA for accession: SRR16298173 [INFO] [stderr] 2 2 | Querying ENA for accession: SRR16298174 [INFO] [stderr] 3 - [ [INFO] [stderr] 4 - { [INFO] [stderr] 5 - "accession": "SRR16298173", [INFO] [stderr] 6 - "reads": [ [INFO] [stderr] 7 - { [INFO] [stderr] 8 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR162/073/SRR16298173/SRR16298173_1.fastq.gz", [INFO] [stderr] 9 - "md5": "76c841d58a4949736555f6fe2adcc86a", [INFO] [stderr] 10 - "bytes": 7332259 [INFO] [stderr] 11 - }, [INFO] [stderr] 12 - { [INFO] [stderr] 13 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR162/073/SRR16298173/SRR16298173_2.fastq.gz", [INFO] [stderr] 14 - "md5": "861e40962c89d62bf298fde8ca1b7415", [INFO] [stderr] 15 - "bytes": 7765784 [INFO] [stderr] 16 - } [INFO] [stderr] 17 - ] [INFO] [stderr] 18 - }, [INFO] [stderr] 19 - { [INFO] [stderr] 20 - "accession": "SRR16298174", [INFO] [stderr] 21 - "reads": [ [INFO] [stderr] 22 - { [INFO] [stderr] 23 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR162/074/SRR16298174/SRR16298174_1.fastq.gz", [INFO] [stderr] 24 - "md5": "ca4365343d144947b5acf6e8ee124e49", [INFO] [stderr] 25 - "bytes": 7444532 [INFO] [stderr] 26 - }, [INFO] [stderr] 27 - { [INFO] [stderr] 28 - "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR162/074/SRR16298174/SRR16298174_2.fastq.gz", [INFO] [stderr] 29 - "md5": "39523f0e9757e953cb0a5d707b9e2b58", [INFO] [stderr] 30 - "bytes": 10960575 [INFO] [stderr] 31 - } [INFO] [stderr] 32 - ] [INFO] [stderr] 33 - } [INFO] [stderr] 34 - ] [INFO] [stderr] 3 + Error querying ENA for accession: SRR16298173 [INFO] [stderr] 4 + Error: error sending request for url (https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR16298173&result=read_run&format=json): error trying to connect: dns error: failed to lookup address information: Temporary failure in name resolution [INFO] [stderr] 5 + Error querying ENA for accession: SRR16298174 [INFO] [stderr] 6 + Error: error sending request for url (https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR16298174&result=read_run&format=json): error trying to connect: dns error: failed to lookup address information: Temporary failure in name resolution [INFO] [stderr] stderr: [INFO] [stderr] [INFO] [stderr] Update snapshots with `TRYCMD=overwrite` [INFO] [stderr] Debug output with `TRYCMD=dump` [INFO] [stdout] test cli_tests ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- cli_tests stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'cli_tests' (38) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/trycmd-0.13.5/src/runner.rs:92:17: [INFO] [stdout] 5 of 5 tests failed [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x57da28b82832 - std::backtrace_rs::backtrace::libunwind::trace::h22a6a535a50603c6 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x57da28b82832 - std::backtrace_rs::backtrace::trace_unsynchronized::h2503a4f30dbfbaa2 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x57da28b82832 - std::sys::backtrace::_print_fmt::hec54e31f36456895 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x57da28b82832 - ::fmt::hb1988e8b50fa5f19 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x57da28b9394f - core::fmt::rt::Argument::fmt::h3118a66e1a57a586 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x57da28b9394f - core::fmt::write::hcd056e06a609f600 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/core/src/fmt/mod.rs:1468:25 [INFO] [stdout] 6: 0x57da28b4a991 - std::io::default_write_fmt::hdabc5d6505cb374b [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x57da28b4a991 - std::io::Write::write_fmt::h18c82179fdc1f9d2 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x57da28b593b2 - std::sys::backtrace::BacktraceLock::print::h69f50ba7cfff8317 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x57da28b5f24f - std::panicking::default_hook::{{closure}}::hfa978eb2255ab3ab [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x57da28b5f0e1 - std::panicking::default_hook::h09da2eaf8f1deadd [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/panicking.rs:325:9 [INFO] [stdout] 11: 0x57da28b1acce - as core::ops::function::Fn>::call::h1697e4d80f236ef6 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/alloc/src/boxed.rs:1987:9 [INFO] [stdout] 12: 0x57da28b1acce - test::test_main_with_exit_callback::{{closure}}::h8f63929ca9fd483b [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x57da28b5f9bf - as core::ops::function::Fn>::call::hba67e0dc3e3fc548 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/alloc/src/boxed.rs:1987:9 [INFO] [stdout] 14: 0x57da28b5f9bf - std::panicking::panic_with_hook::h13c40d280d130fd3 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/panicking.rs:842:13 [INFO] [stdout] 15: 0x57da28b5f76a - std::panicking::panic_handler::{{closure}}::hd79d22e8a1d3b951 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/panicking.rs:707:13 [INFO] [stdout] 16: 0x57da28b594f9 - std::sys::backtrace::__rust_end_short_backtrace::h83414d1ec69cf3a6 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 17: 0x57da28b3dc0d - __rustc[b78aa6c7b08e5dc4]::rust_begin_unwind [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/panicking.rs:698:5 [INFO] [stdout] 18: 0x57da28b9cd40 - core::panicking::panic_fmt::h326b75cf8ee01b13 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/core/src/panicking.rs:78:14 [INFO] [stdout] 19: 0x57da28624ed9 - trycmd::runner::Runner::run::h901059417438ef2f [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/trycmd-0.13.5/src/runner.rs:92:17 [INFO] [stdout] 20: 0x57da286671cf - trycmd::cases::TestCases::run::he89a420642003943 [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/trycmd-0.13.5/src/cases.rs:165:16 [INFO] [stdout] 21: 0x57da2866523a - ::drop::h0b37c9d34f914ef2 [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/trycmd-0.13.5/src/cases.rs:175:18 [INFO] [stdout] 22: 0x57da28681c17 - core::ptr::drop_in_place::ha1214e277c80435a [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/core/src/ptr/mod.rs:804:1 [INFO] [stdout] 23: 0x57da2860d293 - cli_tests::cli_tests::h6dc000ae4f52b3eb [INFO] [stdout] at /opt/rustwide/workdir/tests/cli_tests.rs:3:56 [INFO] [stdout] 24: 0x57da2860d2c7 - cli_tests::cli_tests::{{closure}}::h125eeabf160d08b9 [INFO] [stdout] at /opt/rustwide/workdir/tests/cli_tests.rs:2:15 [INFO] [stdout] 25: 0x57da2860cf36 - core::ops::function::FnOnce::call_once::h04c7830dd631ba4d [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x57da28b1aaab - core::ops::function::FnOnce::call_once::he420dad47d9aac14 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 27: 0x57da28b1aaab - test::__rust_begin_short_backtrace::h51976f55c263f7c2 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/test/src/lib.rs:663:18 [INFO] [stdout] 28: 0x57da28b306d5 - test::run_test_in_process::{{closure}}::h6aa4339396d33320 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/test/src/lib.rs:686:74 [INFO] [stdout] 29: 0x57da28b306d5 - as core::ops::function::FnOnce<()>>::call_once::h5bd0ba3863a53529 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 30: 0x57da28b306d5 - std::panicking::catch_unwind::do_call::h5c710722c40c5839 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/panicking.rs:590:40 [INFO] [stdout] 31: 0x57da28b306d5 - std::panicking::catch_unwind::hf41b5be070ce0f19 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/panicking.rs:553:19 [INFO] [stdout] 32: 0x57da28b306d5 - std::panic::catch_unwind::h4559aa103e6f16d6 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/panic.rs:359:14 [INFO] [stdout] 33: 0x57da28b306d5 - test::run_test_in_process::he6fd763a772ff213 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/test/src/lib.rs:686:27 [INFO] [stdout] 34: 0x57da28b306d5 - test::run_test::{{closure}}::he46f5435849feb5b [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/test/src/lib.rs:607:43 [INFO] [stdout] 35: 0x57da28b06ee4 - test::run_test::{{closure}}::h12a66289c31b502a [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/test/src/lib.rs:637:41 [INFO] [stdout] 36: 0x57da28b06ee4 - std::sys::backtrace::__rust_begin_short_backtrace::h614a7925ed7b2f5e [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/sys/backtrace.rs:158:18 [INFO] [stdout] 37: 0x57da28b0a88a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hbc654088c5dbff36 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 38: 0x57da28b0a88a - as core::ops::function::FnOnce<()>>::call_once::h3f631d2ca531b61d [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 39: 0x57da28b0a88a - std::panicking::catch_unwind::do_call::hd2548748db0aa717 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/panicking.rs:590:40 [INFO] [stdout] 40: 0x57da28b0a88a - std::panicking::catch_unwind::hf7d8620d84df48e2 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/panicking.rs:553:19 [INFO] [stdout] 41: 0x57da28b0a88a - std::panic::catch_unwind::hdde75b8543fcb96b [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/panic.rs:359:14 [INFO] [stdout] 42: 0x57da28b0a88a - std::thread::Builder::spawn_unchecked_::{{closure}}::h991e7d03b432cf3f [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 43: 0x57da28b0a88a - core::ops::function::FnOnce::call_once{{vtable.shim}}::hebddb40255441657 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 44: 0x57da28b53e6f - as core::ops::function::FnOnce>::call_once::h55e8930dc7db99a5 [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/alloc/src/boxed.rs:1973:9 [INFO] [stdout] 45: 0x57da28b53e6f - std::sys::thread::unix::Thread::new::thread_start::he23d038ee4fa004e [INFO] [stdout] at /rustc/2440211fe03bc45c89b6dc1a3df18382ce91e32b/library/std/src/sys/thread/unix.rs:126:17 [INFO] [stdout] 46: 0x72ddd7ba0aa4 - [INFO] [stdout] 47: 0x72ddd7c2da34 - clone [INFO] [stdout] 48: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] cli_tests [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.25s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--test cli_tests` [INFO] running `Command { std: "docker" "inspect" "02212e3ba387edf9f185984749ec53efc0a87cc984d983b8bf47a98d2982fed0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "02212e3ba387edf9f185984749ec53efc0a87cc984d983b8bf47a98d2982fed0", kill_on_drop: false }` [INFO] [stdout] 02212e3ba387edf9f185984749ec53efc0a87cc984d983b8bf47a98d2982fed0