[INFO] fetching crate openmm-sys 7.4.1... [INFO] testing openmm-sys-7.4.1 against try#2440211fe03bc45c89b6dc1a3df18382ce91e32b for pr-146098-1 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-4-tc2/source [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-4-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 2440211fe03bc45c89b6dc1a3df18382ce91e32b [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 087ef56188ad8df33b0f3efaa8a719a0dff0bd352752f2157dda0cf54493ac1f [INFO] running `Command { std: "docker" "start" "-a" "087ef56188ad8df33b0f3efaa8a719a0dff0bd352752f2157dda0cf54493ac1f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "087ef56188ad8df33b0f3efaa8a719a0dff0bd352752f2157dda0cf54493ac1f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "087ef56188ad8df33b0f3efaa8a719a0dff0bd352752f2157dda0cf54493ac1f", kill_on_drop: false }` [INFO] [stdout] 087ef56188ad8df33b0f3efaa8a719a0dff0bd352752f2157dda0cf54493ac1f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 393d4768a0ac9dedf4b6f32aa43ac3a745f48d25616c974b5ce46d19b993f5e7 [INFO] running `Command { std: "docker" "start" "-a" "393d4768a0ac9dedf4b6f32aa43ac3a745f48d25616c974b5ce46d19b993f5e7", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] warning: openmm-sys@7.4.1: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-eb37e8fa1debed52/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/openmm-sys-5edaefa1fd143afb/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-5edaefa1fd143afb/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python3 (found version "3.12.3") [INFO] [stderr] -- The C compiler identification is GNU 13.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 13.3.0 [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc - skipped [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Warning (dev) at CMakeLists.txt:15 (find_package): [INFO] [stderr] Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules [INFO] [stderr] are removed. Run "cmake --help-policy CMP0148" for policy details. Use [INFO] [stderr] the cmake_policy command to set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at CMakeLists.txt:21 (PROJECT): [INFO] [stderr] cmake_minimum_required() should be called prior to this top-level project() [INFO] [stderr] call. Please see the cmake-commands(7) manual for usage documentation of [INFO] [stderr] both commands. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:24 (CMAKE_MINIMUM_REQUIRED): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at CMakeLists.txt:30 (INCLUDE): [INFO] [stderr] Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run [INFO] [stderr] "cmake --help-policy CMP0145" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.28/Modules/Dart.cmake:47 (message): [INFO] [stderr] Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run [INFO] [stderr] "cmake --help-policy CMP0145" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] CMakeLists.txt:30 (INCLUDE) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.28/Modules/FindPackageHandleStandardArgs.cmake:230 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.28/Modules/FindPackageHandleStandardArgs.cmake:600 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.28/Modules/FindDoxygen.cmake:681 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' (80) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/cmake-0.1.44/src/lib.rs:885:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5c19cfae8bd2 - ::fmt::hb1988e8b50fa5f19 [INFO] [stderr] 1: 0x5c19cfaf8f2f - core::fmt::write::hcd056e06a609f600 [INFO] [stderr] 2: 0x5c19cfab85b1 - std::io::Write::write_fmt::hc685c74e0b8ce55d [INFO] [stderr] 3: 0x5c19cfac3cc2 - std::sys::backtrace::BacktraceLock::print::h69f50ba7cfff8317 [INFO] [stderr] 4: 0x5c19cfac628c - std::panicking::default_hook::{{closure}}::hfa978eb2255ab3ab [INFO] [stderr] 5: 0x5c19cfac60e6 - std::panicking::default_hook::h09da2eaf8f1deadd [INFO] [stderr] 6: 0x5c19cfac6915 - std::panicking::panic_with_hook::h13c40d280d130fd3 [INFO] [stderr] 7: 0x5c19cfac67aa - std::panicking::panic_handler::{{closure}}::hd79d22e8a1d3b951 [INFO] [stderr] 8: 0x5c19cfac3e09 - std::sys::backtrace::__rust_end_short_backtrace::h83414d1ec69cf3a6 [INFO] [stderr] 9: 0x5c19cfaac61d - __rustc[b78aa6c7b08e5dc4]::rust_begin_unwind [INFO] [stderr] 10: 0x5c19cfafc8e0 - core::panicking::panic_fmt::h326b75cf8ee01b13 [INFO] [stderr] 11: 0x5c19cfa710cb - cmake::fail::h35a7e1994ab77816 [INFO] [stderr] 12: 0x5c19cfa70d8a - cmake::run::h49a3d5c3b5e7c89c [INFO] [stderr] 13: 0x5c19cfa746a8 - cmake::Config::build::h2f4432eee5138923 [INFO] [stderr] 14: 0x5c19cfa6c9af - build_script_build::main::h3de2296e4f25f886 [INFO] [stderr] 15: 0x5c19cfa6d6c3 - core::ops::function::FnOnce::call_once::h4d942f6a42c73a40 [INFO] [stderr] 16: 0x5c19cfa6d456 - std::sys::backtrace::__rust_begin_short_backtrace::hda3d889a72694e8f [INFO] [stderr] 17: 0x5c19cfa6d009 - std::rt::lang_start::{{closure}}::hbc83d7198bbc6af4 [INFO] [stderr] 18: 0x5c19cfab9cf0 - std::rt::lang_start_internal::h1ca864a6b9355c57 [INFO] [stderr] 19: 0x5c19cfa6cff1 - std::rt::lang_start::ha52d2b1a19c180b2 [INFO] [stderr] 20: 0x5c19cfa6f205 - main [INFO] [stderr] 21: 0x7d94ebe781ca - [INFO] [stderr] 22: 0x7d94ebe7828b - __libc_start_main [INFO] [stderr] 23: 0x5c19cfa69c35 - _start [INFO] [stderr] 24: 0x0 - [INFO] running `Command { std: "docker" "inspect" "393d4768a0ac9dedf4b6f32aa43ac3a745f48d25616c974b5ce46d19b993f5e7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "393d4768a0ac9dedf4b6f32aa43ac3a745f48d25616c974b5ce46d19b993f5e7", kill_on_drop: false }` [INFO] [stdout] 393d4768a0ac9dedf4b6f32aa43ac3a745f48d25616c974b5ce46d19b993f5e7