[INFO] cloning repository https://github.com/keithyin/asts [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/keithyin/asts" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fasts", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fasts'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 0528fd3754e79e46d7b9cfa3d174b58dd8029acc [INFO] testing keithyin/asts against try#2440211fe03bc45c89b6dc1a3df18382ce91e32b for pr-146098-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fasts" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/keithyin/asts [INFO] finished tweaking git repo https://github.com/keithyin/asts [INFO] tweaked toml for git repo https://github.com/keithyin/asts written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/keithyin/asts on toolchain 2440211fe03bc45c89b6dc1a3df18382ce91e32b [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/keithyin/asts already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e92709ec46a56b0d0294d36bb2b53da205113d0ff5093ea1882c98bce3a3463f [INFO] running `Command { std: "docker" "start" "-a" "e92709ec46a56b0d0294d36bb2b53da205113d0ff5093ea1882c98bce3a3463f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e92709ec46a56b0d0294d36bb2b53da205113d0ff5093ea1882c98bce3a3463f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e92709ec46a56b0d0294d36bb2b53da205113d0ff5093ea1882c98bce3a3463f", kill_on_drop: false }` [INFO] [stdout] e92709ec46a56b0d0294d36bb2b53da205113d0ff5093ea1882c98bce3a3463f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 98c328b9bae1e715fcadc18270021e3600c5f133b1a123794a9d385276f91de2 [INFO] running `Command { std: "docker" "start" "-a" "98c328b9bae1e715fcadc18270021e3600c5f133b1a123794a9d385276f91de2", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.93 [INFO] [stderr] Compiling unicode-ident v1.0.15 [INFO] [stderr] Compiling libc v0.2.171 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Compiling pkg-config v0.3.31 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling serde v1.0.217 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling stable_deref_trait v1.2.0 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling bytemuck v1.21.0 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling once_cell v1.20.2 [INFO] [stderr] Compiling quote v1.0.38 [INFO] [stderr] Compiling litemap v0.7.4 [INFO] [stderr] Compiling writeable v0.5.5 [INFO] [stderr] Compiling syn v2.0.96 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling cc v1.2.10 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Compiling rustversion v1.0.19 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling icu_locid_transform_data v1.5.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling cmake v0.1.52 [INFO] [stderr] Compiling openssl-src v300.4.1+3.4.0 [INFO] [stderr] Compiling itoa v1.0.14 [INFO] [stderr] Compiling smallvec v1.13.2 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling libz-sys v1.1.21 [INFO] [stderr] Compiling openssl-sys v0.9.104 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling libloading v0.8.6 [INFO] [stderr] Compiling ryu v1.0.18 [INFO] [stderr] Compiling icu_properties_data v1.5.0 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling synstructure v0.13.1 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling curl-sys v0.4.78+curl-8.11.0 [INFO] [stderr] Compiling tracing-core v0.1.33 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling utf16_iter v1.0.5 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling utf8_iter v1.0.4 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling icu_normalizer_data v1.5.0 [INFO] [stderr] Compiling bitflags v2.8.0 [INFO] [stderr] Compiling write16 v1.0.0 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling zerofrom-derive v0.1.5 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Compiling zerovec-derive v0.10.3 [INFO] [stderr] Compiling serde_derive v1.0.217 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling zerofrom v0.1.5 [INFO] [stderr] Compiling icu_provider_macros v1.5.0 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling yoke v0.7.5 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling zerovec v0.10.4 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling tinystr v0.7.6 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling icu_locid v1.5.0 [INFO] [stderr] Compiling icu_collections v1.5.0 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling icu_provider v1.5.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling icu_locid_transform v1.5.0 [INFO] [stderr] Compiling anyhow v1.0.95 [INFO] [stderr] Compiling hashbrown v0.15.2 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling icu_properties v1.5.1 [INFO] [stderr] Compiling indexmap v2.7.1 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling tracing-attributes v0.1.28 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling simba v0.8.1 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling thiserror v2.0.11 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling portable-atomic v1.10.0 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling pin-project-lite v0.2.16 [INFO] [stderr] Compiling icu_normalizer v1.5.0 [INFO] [stderr] Compiling percent-encoding v2.3.1 [INFO] [stderr] Compiling form_urlencoded v1.2.1 [INFO] [stderr] Compiling tracing v0.1.41 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling idna_adapter v1.2.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling idna v1.0.3 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Compiling thiserror-impl v2.0.11 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling powerfmt v0.2.0 [INFO] [stderr] Compiling serde_json v1.0.137 [INFO] [stderr] Compiling regex-syntax v0.6.29 [INFO] [stderr] Compiling unicode-width v0.2.0 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling anstyle-parse v0.2.6 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling console v0.15.10 [INFO] [stderr] Compiling deranged v0.3.11 [INFO] [stderr] Compiling crossbeam-deque v0.8.6 [INFO] [stderr] Compiling url v2.5.4 [INFO] [stderr] Compiling multimap v0.10.0 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling minimap2-sys v0.1.21+minimap2.2.28 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling nalgebra v0.32.6 [INFO] [stderr] Compiling ordered-float v4.6.0 [INFO] [stderr] Compiling log v0.4.25 [INFO] [stderr] Compiling sha1_smol v1.0.1 [INFO] [stderr] Compiling time-core v0.1.2 [INFO] [stderr] Compiling num_threads v0.1.7 [INFO] [stderr] Compiling iana-time-zone v0.1.61 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling overload v0.1.1 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling anstyle v1.0.10 [INFO] [stderr] Compiling colorchoice v1.0.3 [INFO] [stderr] Compiling anstyle-query v1.1.2 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling num-conv v0.1.0 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling time v0.3.37 [INFO] [stderr] Compiling anstream v0.6.18 [INFO] [stderr] Compiling indicatif v0.17.9 [INFO] [stderr] Compiling nu-ansi-term v0.46.0 [INFO] [stderr] Compiling chrono v0.4.39 [INFO] [stderr] Compiling uuid v1.12.1 [INFO] [stderr] Compiling tracing-log v0.2.0 [INFO] [stderr] Compiling matchers v0.1.0 [INFO] [stderr] Compiling tracing-serde v0.2.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.14 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling thread_local v1.1.8 [INFO] [stderr] Compiling buffer-redux v1.0.2 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling sharded-slab v0.1.7 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling clap_lex v0.7.4 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling needletail v0.6.1 [INFO] [stderr] Compiling tracing-subscriber v0.3.19 [INFO] [stderr] Compiling clap_builder v4.5.27 [INFO] [stderr] Compiling multimap v0.9.1 [INFO] [stderr] Compiling clap_derive v4.5.24 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling crossbeam-queue v0.3.12 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling ordered-float v3.9.2 [INFO] [stderr] Compiling strum v0.25.0 [INFO] [stderr] Compiling clap v4.5.27 [INFO] [stderr] Compiling crossbeam v0.8.4 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling sysinfo v0.34.2 [INFO] [stderr] Compiling statrs v0.17.1 [INFO] [stderr] Compiling bio v2.0.3 [INFO] [stderr] Compiling tracing-appender v0.2.3 [INFO] [stderr] Compiling minimap2 v0.1.23+minimap2.2.28 [INFO] [stderr] Compiling statrs v0.16.1 [INFO] [stderr] Compiling bio v1.6.0 [INFO] [stderr] Compiling rust-htslib v0.49.0 [INFO] [stderr] Compiling gskits v0.13.0 [INFO] [stderr] Compiling gskits v0.15.15 [INFO] [stderr] Compiling mm2 v0.23.1 [INFO] [stderr] Compiling asts v0.16.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `bam_header_ext::BamHeaderExt` [INFO] [stdout] --> src/lib.rs:9:23 [INFO] [stdout] | [INFO] [stdout] 9 | use ::gskits::gsbam::{bam_header_ext::BamHeaderExt, bam_record_ext::BamRecordExt}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `mm`, `ins`, `homo_ins`, `del`, and `homo_del` are never read [INFO] [stdout] --> src/sbr_and_ref_to_cs.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 25 | struct Cs2RefAlnRes { [INFO] [stdout] | ------------ fields in this struct [INFO] [stdout] 26 | identity: f32, [INFO] [stdout] 27 | mm: u32, [INFO] [stdout] | ^^ [INFO] [stdout] 28 | ins: u32, [INFO] [stdout] | ^^^ [INFO] [stdout] 29 | homo_ins: u32, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 30 | del: u32, [INFO] [stdout] | ^^^ [INFO] [stdout] 31 | homo_del: u32, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Cs2RefAlnRes` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 5m 55s [INFO] running `Command { std: "docker" "inspect" "98c328b9bae1e715fcadc18270021e3600c5f133b1a123794a9d385276f91de2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "98c328b9bae1e715fcadc18270021e3600c5f133b1a123794a9d385276f91de2", kill_on_drop: false }` [INFO] [stdout] 98c328b9bae1e715fcadc18270021e3600c5f133b1a123794a9d385276f91de2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 501e8f4d5ae8c651d2963b70aea033dcfd4ba3aac3cdb8e33cc3c7577fd8998b [INFO] running `Command { std: "docker" "start" "-a" "501e8f4d5ae8c651d2963b70aea033dcfd4ba3aac3cdb8e33cc3c7577fd8998b", kill_on_drop: false }` [INFO] [stderr] Compiling unicode-width v0.1.14 [INFO] [stderr] Compiling plotters-backend v0.3.7 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling half v1.8.3 [INFO] [stderr] Compiling cast v0.3.0 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling walkdir v2.5.0 [INFO] [stderr] Compiling plotters-svg v0.3.7 [INFO] [stderr] Compiling serde_cbor v0.11.2 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling oorandom v11.1.4 [INFO] [stdout] warning: unused import: `bam_header_ext::BamHeaderExt` [INFO] [stdout] --> src/lib.rs:9:23 [INFO] [stdout] | [INFO] [stdout] 9 | use ::gskits::gsbam::{bam_header_ext::BamHeaderExt, bam_record_ext::BamRecordExt}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `mm`, `ins`, `homo_ins`, `del`, and `homo_del` are never read [INFO] [stdout] --> src/sbr_and_ref_to_cs.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 25 | struct Cs2RefAlnRes { [INFO] [stdout] | ------------ fields in this struct [INFO] [stdout] 26 | identity: f32, [INFO] [stdout] 27 | mm: u32, [INFO] [stdout] | ^^ [INFO] [stdout] 28 | ins: u32, [INFO] [stdout] | ^^^ [INFO] [stdout] 29 | homo_ins: u32, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 30 | del: u32, [INFO] [stdout] | ^^^ [INFO] [stdout] 31 | homo_del: u32, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Cs2RefAlnRes` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling plotters v0.3.7 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling criterion-plot v0.4.5 [INFO] [stderr] Compiling criterion v0.3.6 [INFO] [stderr] Compiling asts v0.16.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `bam_header_ext::BamHeaderExt` [INFO] [stdout] --> src/lib.rs:9:23 [INFO] [stdout] | [INFO] [stdout] 9 | use ::gskits::gsbam::{bam_header_ext::BamHeaderExt, bam_record_ext::BamRecordExt}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `mm`, `ins`, `homo_ins`, `del`, and `homo_del` are never read [INFO] [stdout] --> src/sbr_and_ref_to_cs.rs:27:5 [INFO] [stdout] | [INFO] [stdout] 25 | struct Cs2RefAlnRes { [INFO] [stdout] | ------------ fields in this struct [INFO] [stdout] 26 | identity: f32, [INFO] [stdout] 27 | mm: u32, [INFO] [stdout] | ^^ [INFO] [stdout] 28 | ins: u32, [INFO] [stdout] | ^^^ [INFO] [stdout] 29 | homo_ins: u32, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 30 | del: u32, [INFO] [stdout] | ^^^ [INFO] [stdout] 31 | homo_del: u32, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Cs2RefAlnRes` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 9.87s [INFO] running `Command { std: "docker" "inspect" "501e8f4d5ae8c651d2963b70aea033dcfd4ba3aac3cdb8e33cc3c7577fd8998b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "501e8f4d5ae8c651d2963b70aea033dcfd4ba3aac3cdb8e33cc3c7577fd8998b", kill_on_drop: false }` [INFO] [stdout] 501e8f4d5ae8c651d2963b70aea033dcfd4ba3aac3cdb8e33cc3c7577fd8998b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] ecec8a7e565be245d6e36a88851a5e65bbdddebc04fa717ea6abff126296817b [INFO] running `Command { std: "docker" "start" "-a" "ecec8a7e565be245d6e36a88851a5e65bbdddebc04fa717ea6abff126296817b", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `bam_header_ext::BamHeaderExt` [INFO] [stderr] --> src/lib.rs:9:23 [INFO] [stderr] | [INFO] [stderr] 9 | use ::gskits::gsbam::{bam_header_ext::BamHeaderExt, bam_record_ext::BamRecordExt}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: fields `mm`, `ins`, `homo_ins`, `del`, and `homo_del` are never read [INFO] [stderr] --> src/sbr_and_ref_to_cs.rs:27:5 [INFO] [stderr] | [INFO] [stderr] 25 | struct Cs2RefAlnRes { [INFO] [stderr] | ------------ fields in this struct [INFO] [stderr] 26 | identity: f32, [INFO] [stderr] 27 | mm: u32, [INFO] [stderr] | ^^ [INFO] [stderr] 28 | ins: u32, [INFO] [stderr] | ^^^ [INFO] [stderr] 29 | homo_ins: u32, [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] 30 | del: u32, [INFO] [stderr] | ^^^ [INFO] [stderr] 31 | homo_del: u32, [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `Cs2RefAlnRes` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: `asts` (lib) generated 2 warnings (run `cargo fix --lib -p asts` to apply 1 suggestion) [INFO] [stderr] warning: `asts` (lib test) generated 2 warnings (2 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.23s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/asts-e100e468c248482b) [INFO] [stdout] [INFO] [stdout] running 7 tests [INFO] [stdout] test sbr_and_ref_to_cs::test::merge_intervals ... ok [INFO] [stdout] test reporter::test::test_reporter ... ok [INFO] [stdout] test tests::test_align ... ok [INFO] [stdout] test tests::test_build_aligner ... ok [INFO] [stdout] test tests::test_align_two_seq ... ok [INFO] [stdout] test tests::test_short_insert ... ok [INFO] [stdout] test tests::test_align2 ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/asfstc.rs (/opt/rustwide/target/debug/deps/asfstc-6d302d98de9cd5a2) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/asrtc.rs (/opt/rustwide/target/debug/deps/asrtc-245dc08560344b85) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/asts.rs (/opt/rustwide/target/debug/deps/asts-2c743d4ab0393b19) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests asts [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "ecec8a7e565be245d6e36a88851a5e65bbdddebc04fa717ea6abff126296817b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ecec8a7e565be245d6e36a88851a5e65bbdddebc04fa717ea6abff126296817b", kill_on_drop: false }` [INFO] [stdout] ecec8a7e565be245d6e36a88851a5e65bbdddebc04fa717ea6abff126296817b