[INFO] cloning repository https://github.com/heathsc/ont_align_stats [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/heathsc/ont_align_stats" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fheathsc%2Font_align_stats", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fheathsc%2Font_align_stats'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 11baf25b01df103cc5c55685f30ff05cba155353 [INFO] testing heathsc/ont_align_stats against try#2440211fe03bc45c89b6dc1a3df18382ce91e32b for pr-146098-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fheathsc%2Font_align_stats" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/heathsc/ont_align_stats [INFO] finished tweaking git repo https://github.com/heathsc/ont_align_stats [INFO] tweaked toml for git repo https://github.com/heathsc/ont_align_stats written to /workspace/builds/worker-4-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/heathsc/ont_align_stats on toolchain 2440211fe03bc45c89b6dc1a3df18382ce91e32b [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/heathsc/ont_align_stats already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bce699c884fd302131f77d187ffb6e3cf877decc958831829a209205093f316d [INFO] running `Command { std: "docker" "start" "-a" "bce699c884fd302131f77d187ffb6e3cf877decc958831829a209205093f316d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bce699c884fd302131f77d187ffb6e3cf877decc958831829a209205093f316d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bce699c884fd302131f77d187ffb6e3cf877decc958831829a209205093f316d", kill_on_drop: false }` [INFO] [stdout] bce699c884fd302131f77d187ffb6e3cf877decc958831829a209205093f316d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+2440211fe03bc45c89b6dc1a3df18382ce91e32b" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 121c249086e6482297233a0fd2a22365102628e50a36c54c631cdf466b788d15 [INFO] running `Command { std: "docker" "start" "-a" "121c249086e6482297233a0fd2a22365102628e50a36c54c631cdf466b788d15", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.82 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling anyhow v1.0.83 [INFO] [stderr] Compiling linux-raw-sys v0.4.13 [INFO] [stderr] Compiling serde v1.0.202 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Compiling aho-corasick v0.7.20 [INFO] [stderr] Compiling iana-time-zone v0.1.60 [INFO] [stderr] Compiling serde_json v1.0.117 [INFO] [stderr] Compiling either v1.11.0 [INFO] [stderr] Compiling os_str_bytes v6.6.1 [INFO] [stderr] Compiling termcolor v1.1.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling os_pipe v1.1.5 [INFO] [stderr] Compiling is-terminal v0.4.12 [INFO] [stderr] Compiling textwrap v0.16.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.12 [INFO] [stderr] Compiling users v0.11.0 [INFO] [stderr] Compiling clap_lex v0.2.4 [INFO] [stderr] Compiling chrono v0.4.38 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling clap v3.2.25 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling regex v1.7.3 [INFO] [stderr] Compiling stderrlog v0.6.0 [INFO] [stderr] Compiling syn v2.0.63 [INFO] [stderr] Compiling sysinfo v0.30.12 [INFO] [stderr] Compiling tempfile v3.10.1 [INFO] [stderr] Compiling compress_io v0.5.0 [INFO] [stderr] Compiling serde_derive v1.0.202 [INFO] [stderr] Compiling c2rust-bitfields-derive v0.2.1 [INFO] [stderr] Compiling c2rust-bitfields v0.3.0 [INFO] [stderr] Compiling r_htslib v0.14.0 (https://github.com/heathsc/r_htslib.git#9f8544ef) [INFO] [stderr] Compiling ont_align_stats v0.13.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: methods `ctg_regions_length` and `total_regions_Length` are never used [INFO] [stdout] --> src/regions.rs:426:12 [INFO] [stdout] | [INFO] [stdout] 162 | impl Regions { [INFO] [stdout] | ------------ methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 426 | pub fn ctg_regions_length(&self, ctg: &str) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 437 | pub fn total_regions_Length(&self) -> usize { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `total_regions_Length` should have a snake case name [INFO] [stdout] --> src/regions.rs:437:12 [INFO] [stdout] | [INFO] [stdout] 437 | pub fn total_regions_Length(&self) -> usize { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `total_regions_length` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcny4d0G/symbols.o" "<17 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libserde_json-1736c6f822293560,libitoa-4c6598116a867907,libryu-f8ba606093049f91,libstderrlog-861551d6cca3db60,libthread_local-d5da2ac9bf724ea4,libis_terminal-ce29e887423683fb,libserde-f4cbfdff1a59284e,libusers-3e2688a29dd3bfac,libsysinfo-ccf26008aa6e7e7f,libcfg_if-33ef6c02a07f9fec,librayon-e584a1c789f6263a,librayon_core-91553b22dcd827f2,libcrossbeam_deque-9ef4ee6c8344f758,libcrossbeam_epoch-83d4e6858184b011,libeither-e2b099ad4b783585,libchrono-d4d3199817b30b9d,libnum_traits-70722c056e5d47ed,libiana_time_zone-a18c7932f053b032,libcompress_io-5e484f8807c2453b,libnum_cpus-ebc0823c8a57134a,libos_pipe-4e826d176fcf2276,libr_htslib-0c7e3a8ef9df6baf,libregex-878d018f5fd5f513,libaho_corasick-f6f5633370d2ec19,libmemchr-659d2f3239d1b4b2,libregex_syntax-e3521940133a580f,liblazy_static-2bb390fee0230a38,libc2rust_bitfields-d4b555b9adbd4a8d,libcrossbeam_channel-8d076cddcf7231d8,libcrossbeam_utils-8767270430be56a4,libindexmap-478de18483c8f743,libequivalent-fdc46004df91ad08,libhashbrown-5d9404f16ad26a3c,libclap-900d07c942d4af1b,libatty-dc72669de32bc548,liblibc-aa070599fea9ccde,libstrsim-d620f0ade87b0f1f,libtermcolor-3421dff75a1a6c35,libtextwrap-72ce4fc05f68a492,libindexmap-134afc313d9e7325,libhashbrown-8ac6e23154e6c3d0,libclap_lex-cd2d612a47b62685,libos_str_bytes-475790474f86a5f1,libbitflags-e2b4db6c651223da,libonce_cell-24c5d665b6879050,libanyhow-5a7a6c9026c03448,liblog-276235a63555025f}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lhts" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcny4d0G/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/ont_align_stats-4b7280345a44c454" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: rust-lld: error: unable to find library -lhts [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `ont_align_stats` (bin "ont_align_stats") due to 1 previous error; 2 warnings emitted [INFO] running `Command { std: "docker" "inspect" "121c249086e6482297233a0fd2a22365102628e50a36c54c631cdf466b788d15", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "121c249086e6482297233a0fd2a22365102628e50a36c54c631cdf466b788d15", kill_on_drop: false }` [INFO] [stdout] 121c249086e6482297233a0fd2a22365102628e50a36c54c631cdf466b788d15